zc3h15 (zc3h15,LOC107562108,LOC107663835,LOC107749874,LOC107752875,LOC107672221)


Basic Information

Item Value
gene id zc3h15
gene name zc3h15,LOC107562108,LOC107663835,LOC107749874,LOC107752875,LOC107672221
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8793317 ~ 8797935 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249543.1
CCCAGAATGCATCGCGGCTGCTAGTGCGGTTAGCCTACGCTTACCTGTGGACATACGGCATTATACACACGGCGTCAGGGTTACcatagttttatagtttgtctTAAGCGATATGCCTCCGAAAAAGCCAGCTCAAGCTACAGGCAGTAAGAAAACCcaagagaagaagaaggagaagatcATTGAGGATAAAACCTTtggactgaaaaacaaaaagggagCTAAACAACAGAAGTTTATCAAAGCTGTGACACAGCAGGTCAAGTATGGACAGCAGAATTCACGACAGATCGCTGCTGCTGAAgctgaaaagaacaaaaagaaagacgACAAGAAGAAGGAGTTGTCTGAGTTGAATGAGCTTTTCAAGCCAGTGGTGGCAGCTCAGAAAGTCAGCAAAGgtGTGGATCCCAAGTCTGTGCTGTGTGCTTTCTTTAAACAAGGCCAATGTACCAAAGGTGATAAGTGTAAATTCTCTCATGACCTGTCTTTGGAAAGGAAATGTGAGAAAAGGAGCGTGTATGTGGATGGCAGAGATGATGAGCTGGAGAAAGACACTATGGAAAACTGGGATGAAAAGAAACTTGAGGAGGTGGTGAACAAGAAGCATGGAGAGGCTGAAAAGAAGAAAGCTAAGACCCAAATTGTGTGCAAGTATTTCCTTGATGCTattgaaaacaacaaatacgGCTGGTTTTGGGTTTGTCCCGGCGGAGGTGACAACTGTATGTACCGCCACGCTCTTCCTGTGGGCTTTGTCCTGAAAAAAGacaagaagaaagaagagaCAAACGAGGAGGAGATCTCGCTGGAGGATTTGATAGAGACTGAGCGAGCTGCTCTGGGAGCAAATGTCACCCGAATTACTCTGGAAACATTTTTGGCCtggaagaaaaggaaaaggcaAGAGAAACTGGCTAAAGCAGAGCAGGacatggagagaaagaaagccgACTTCAAAGCTGGCAGGGcgtttgggGTCAGTGGAAGGGAAGTGTTTGAGTTCAGACCTGAGCTTGTTAATGATGACGACGAGGAAGCCGATGATACAAAATActctgatgaagatgaagatgatgatgctGAGATTTATAATGAGGTGGAGGAAATAGACGAGGTTCAGGACATTGACATTGCTAGATTTATCCCTAAAGAGGTGGATAATGCGGGTATAACAGTGGCGTCTGCAGACAGGTTTAGTGCCAGAGCTCCTCCAACAAATGACACGGATGATAATAAATTGAGCGAGGCATCAGGCGGAGCTATGGAGAACGGAGAGCACAGTGAGGACCAGACGCTGGAGGACGGAGAAACTAATGAGGAGTCGGAGGCGGTGCCTGTAGATGAGAACCTCTTCACCGGGGAGGACCTAGACGAACTAGAAGAGGAACTCAACACACTGGACCTGGACGAGTGAAGGCTGGGACTGTTGCATCATTCATGAACTACACATGGCTTGATGTGAATGACAATATTTTCACAAATAGCTACCACCAGAATTGCCATGTCAGAAGCCGCTCTGCCTGCAATATGCACCCTCATCACTCGATGTCCCGGGACGCTAGAGGAGAGACTGGAGAAGACGTGGCTCTTGTTCTTTctcttgatttaatttttttttttttttaattgcagtctACCCCAAAAGCACAGTCAGGTGAGGGCTTGGTTCTTCAGCAGGAGCGTTCTTCAAATATTTATGAGGCTGTTGATTATTTGATGTTTCTGCATTCTGTTTTGAAAGATTTGATTAAATCGGTCTTTGTAAGGTGATCCAGCATAAATCCTCTTCAAGACGTTCAAGCACTATTGGAATCCGGTTTCCTCTTCCTTCTGCTGTTGAAATGTtgctttaatgaaaacaaaggtTCAGTCAATCGGtctcatttcagtttttaactTGTAACCAACTGCATGCCTGTATCAGGATCAGAATGTAAAGGCGACTAAGTGTGATGCTGACATTCAAGTGTTCAATAATCAGTTGATCAGATTGAGATGTTGAATGTGAAGTCTCTCGGATGCAGATTGGGCATCTGGCCTTACTGAAGGAGATGTGGATGATGACATTGTTACTAGTAATGTTTTGGAGTGGTTTCAAgaagtgtgagagaaagaggtgAGCTTGTGCGATGAACTAGTAACGTGTCTGTCCTTTTTGtattcagttgttttaaattgcccTCCCACCAACACCCCACaagaaattgtaaataaaaggaTATCAGATACTG

Function

symbol description
zc3h15 Predicted to enable metal ion binding activity. Predicted to be involved in cytoplasmic translation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Orthologous to human ZC3H15 (zinc finger CCCH-type containing 15).

NR:

description
PREDICTED: zinc finger CCCH domain-containing protein 15

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249543.1 True 2234 mRNA 0.44 10 8793317 8797935

Neighbor

gene id symbol gene type direction distance location
znf804a znf804a,LOC107562107,LOC107749875,LOC107752876,LOC107672201,LOC107663892,LOC107560471 coding upstream 91022 8651167 ~ 8702295 (+)
nup35 nup35,LOC107663916,LOC107749876,LOC107668364,LOC107752922 coding upstream 223320 8566454 ~ 8569997 (+)
zgc:162707 zgc:162707,cunh3orf70,LOC107749877,LOC107596553,LOC107592986 coding upstream 264446 8520934 ~ 8528871 (+)
ehhadh ehhadh,LOC107596516 coding upstream 273971 8510712 ~ 8519346 (+)
tra2b LOC107668395,LOC107677789,LOC107592988,LOC107749892 coding upstream 333992 8453604 ~ 8459325 (+)
itgav itgav,LOC107663834,LOC107672211,LOC107752904 coding downstream 3362 8801297 ~ 8824391 (+)
umps umps coding downstream 29755 8827690 ~ 8831902 (+)
chpfa chpfa,LOC107749870,LOC107663851,LOC107571864,LOC107672254,LOC107743933 coding downstream 168926 8966861 ~ 8976999 (+)
hnmt hnmt,LOC107751616,LOC107720324,LOC107663827,LOC107658225,LOC107577691,LOC107558040 coding downstream 772465 9570400 ~ 9574754 (+)
spopla spopla,LOC107751611,LOC107556446,LOC107720326,LOC107558043,LOC107658226,LOC107663914 coding downstream 804051 9601986 ~ 9610746 (+)
LOC122351403 NA non-coding upstream 178333 8600724 ~ 8614984 (+)
G68678 NA non-coding upstream 570500 8222587 ~ 8222817 (+)
G68668 NA non-coding upstream 587354 8203853 ~ 8205963 (+)
G68446 NA non-coding upstream 939039 7853481 ~ 7854278 (+)
G68435 NA non-coding upstream 1456958 7335491 ~ 7336359 (+)
G68808 NA non-coding downstream 28277 8826212 ~ 8827046 (+)
LOC122352063 NA non-coding downstream 61538 8859473 ~ 8860379 (+)
G68879 asic4a,asic4,LOC107672268,LOC107663852,LOC107560474,LOC107749871,LOC107571863 non-coding downstream 249525 9047460 ~ 9078537 (+)
G68880 NA non-coding downstream 265185 9063120 ~ 9064676 (+)
G68895 NA non-coding downstream 378389 9176324 ~ 9178926 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other upstream 287174 8460744 ~ 8506143 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other upstream 359834 8431111 ~ 8433483 (+)
si:ch211-167j6.3 NA other upstream 450566 8341295 ~ 8342751 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 2820194 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 2907564 5883927 ~ 5885753 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 65452 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 69162 8867097 ~ 8871633 (+)
si:ch1073-416j23.1 si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448 other downstream 344657 9142592 ~ 9150093 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other downstream 358110 9156045 ~ 9160821 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other downstream 645190 9443125 ~ 9566997 (+)

Expression


Co-expression Network