grtp1b (grtp1b,LOC107748194,LOC107695480,LOC107673704)


Basic Information

Item Value
gene id grtp1b
gene name grtp1b,LOC107748194,LOC107695480,LOC107673704
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16898663 ~ 16902174 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249544.1
AGTGAACTGCATAAATTACTTTGAACTTAACGACCTAGATTCAGTATTAACACTTAAAACAAACATCTAAAATGGTTAAAACGTCGAGTTAAAACAACAGACAGCTAGGCTACACACCATAAAATTATACGCGCAACACGCAAGGTAAAAGTAACCTGTGAATATGCCAGGTTCCAGTGTAGGGGGAGGAGTCTATATAAACAGCTCGGCTCAGTTAGTGTCCGATGGAAGACACGCATCAAACTCTACATGGAGAATCACTTTAATGATCAAAACACGGAAGGTTCCGCAAGTTCAGACAGCAACGACTGCCAAAGGGTAGACCAGTATGGATTTGAGAGAGCAGAAGATTTCAACTATGAATCCTATGAGGACTTCACGTCCAAGAATTTAGCTGTTGTCACTAGAAGGTCAAACAAGTGGTCGAAACTTTTGCAGAGCACTGTAAAAGTGGAGAAAAATGTTAAAGTAAAGCGATACGTGAGGAAgggggttccatgtgaacatcGCACTCAGATCTGGATGGCAACCAGTGGAGCCCAGGACCAGCTGGACAGAAATCCTGGCTACTATCATTCTCTATTAAAGTCTGAACATGACCCTAAAATAGAAGAGGTTATACGTGCTGATATGCACAGAACCTTTCCTGACAACATTCAGTTCCGTGCCTCCTCCCAGCCATGTTTACAAAAAGCCCTGTTTAATGTACTTCTGACTTATGGACACCACAATAAGGATGTTGGTTACTGTCAGGGAATGAACTTTATTGCTGGATACCTCCTCATCATCACTAAAGATGAAGAGAAGTCTTTCTGGTTAATGGATGCTTTACTTGGCAAGATCTTACCAGACTATTACACAGCAACAATGCTGGGGCTTAAAATGGATCAAGAGGTGCTTGGAGAGCTTGTCAGAATGAAGGTTCCTGCTGTCTGGAAGGTCATGAATCAGCACGATGTAATGTGGACCCTGGTGGTCTCGCGCTGGTTCATCTGCCTGTATGTAGACATACTTCCTGTAGAGACAGTGCTGAGAATATGGGACTGCCTTTTTTACGAGGGATCCAAGATCTTGTTCAGAGTGGCTTTGACGCTGATTCATCAACATCAGAACCTCATCTCACAGGCCCAGAATCTCCCAGAAATCTGTGAACGCTTCAAACAGATCACTCGCGGCGAGTACGTAGAGGACTACCATACCTTCATGCAGAAAATCTTCATGGAGCCTGGAGGTCTCTCTACAGCAACAATTACTAAACTCAGGAAGATGTGTAGGAATCGCATTACTTCTGCCTAAAACCCTCCACTATACTACACTaaatgatggatgatggacATACAGTTCTGCATGTTAGATGAGAATCTATTACTTACTaaatgggggggaaaaaaaaaaaacttttatatgcatatttttaacataatgacagggatacactacattttaagtgtgtcgggtcagtaagattttttttttactgtgtctGACAGTGAAGTCTTGTgatcaccaagcctgcatttatttgatacaaaataCAGCAACCAGGAATAATTGAAAGTgtcatttacaatttaaaataatgttttctatttatatagAAAGGCTTAAatttgcaatttattcctgtggtggcAAAAGCTGCCGTTACTTCAGTCTTAAGTGTCAAATGagcctttagaaatcattccaatTTGTTGATTCGGTGTTgcttaatatgaatatttcatggATACAACAATGAATATTGTTTGATTAATGGAAAACTAATAAAGCGTTTATTGAATGCTTTTGAAACGATGTATAAAATTTGacctgatcaat

Function

symbol description
grtp1b Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human GRTP1 (growth hormone regulated TBC protein 1).

NR:

description
PREDICTED: growth hormone-regulated TBC protein 1-A-like

GO:      GO:0005097,GO:0032313

KEGG:

id description
K19953 GRTP1, TBC1D6, MSB3_4; TBC1 domain family member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249544.1 True 1821 mRNA 0.40 8 16898663 16902174

Neighbor

gene id symbol gene type direction distance location
LOC122352097 me3,LOC107748144,LOC107595810,LOC107695468,LOC107756775,LOC108426042,LOC102313335 coding downstream 131478 16761873 ~ 16767185 (-)
LOC122351201 nxpe3,LOC107748146,LOC107673677,LOC107597504,LOC107695470,LOC107756776,LOC107595812 coding downstream 138491 16752003 ~ 16760172 (-)
slc35a5 LOC107748197,LOC107565955,LOC107673679,LOC107756781,LOC107695476 coding downstream 200024 16694754 ~ 16698639 (-)
dipk2b si:ch73-147f11.1,LOC107756741,LOC107695496,LOC107595885 coding downstream 314602 16579731 ~ 16584061 (-)
fundc1 fundc1,LOC107673665,LOC107748200,LOC107565940,LOC107695457,LOC107595886,LOC107756742 coding downstream 358012 16538368 ~ 16540651 (-)
ppp2r3b ppp2r3b,LOC107673721,LOC108426065,LOC107748139,LOC107695472,LOC108266308 coding upstream 36110 16938284 ~ 16954349 (-)
LOC122352140 NA coding upstream 214843 17117017 ~ 17131427 (-)
slc25a6 slc25a6,LOC107597494,LOC108426068,LOC107595824,LOC107695486,LOC107756767,LOC108266970 coding upstream 230296 17132470 ~ 17136795 (-)
asmtl asmtl,LOC107597490,LOC107673687 coding upstream 234967 17137141 ~ 17143357 (-)
p2ry8 p2ry8,LOC107748136,LOC107597492,LOC107673689,LOC107756734,LOC107695481,LOC107595819 coding upstream 242682 17144856 ~ 17151079 (-)
G70981 nxpe3,LOC107597504,LOC107748146,LOC107673677,LOC107695470,LOC107756776,LOC107595812 non-coding downstream 31141 16866492 ~ 16867522 (-)
G71006 NA non-coding downstream 32241 16866178 ~ 16866422 (-)
G71005 NA non-coding downstream 33074 16865278 ~ 16865589 (-)
G70991 NA non-coding downstream 69004 16827058 ~ 16829659 (-)
G70979 NA non-coding downstream 146725 16751035 ~ 16751938 (-)
G71035 NA non-coding upstream 15050 16917224 ~ 16919314 (-)
G71117 NA non-coding upstream 310702 17212876 ~ 17297150 (-)
G71131 NA non-coding upstream 436946 17339120 ~ 17339530 (-)
G71134 NA non-coding upstream 438371 17340545 ~ 17340915 (-)
LOC122352115 NA non-coding upstream 441542 17343716 ~ 17351712 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other downstream 9116 16886753 ~ 16889547 (-)
G70986 pou2f1b,LOC107748141 other downstream 74888 16817140 ~ 16823775 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other downstream 152441 16720804 ~ 16746222 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other downstream 1126799 15771421 ~ 15771864 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 1499226 15389218 ~ 15399437 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 333698 17235872 ~ 17255491 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other upstream 462013 17364187 ~ 17521560 (-)
sema5ba sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063 other upstream 1349062 18251236 ~ 18366267 (-)
LOC122352185 NA other upstream 1667581 18569755 ~ 18569882 (-)
ankar ankar,LOC107728908,LOC107660654 other upstream 2817768 19719942 ~ 19731794 (-)

Expression


Co-expression Network