LOC122352057


Basic Information

Item Value
gene id LOC122352057
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19736033 ~ 19737211 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249549.1
CATTCGTGTTCGACGAACACTTTGCATGTGGAAATGTTTCCTTAAATTTTCCGCGTCGTTTTGATAGAAAATGTCTTCTAAAAACAGCCAGAGAACGGAAGCTGGAGCTCAAGAAGAGCGTGCGCAAAAAGAGGAGTTAAACAAGAAGataaaagaacaaaagattGTTGTTGACGAGTTGAGCAATCTGAAGAAAAACAGGAGAGTGTATACCCAGCAGCCCAACAGCAATATATTCTTCCTAGCAGATAAAGGGGAGACTCTCGGCGCTTGTAAAAAGGATCTGGATAACATGAGAAAAGAATATCAAGATATATAGTGCCTTGAGATCATGTGTGGGATCTGCTGTGTGGTCAGTTTGACCACACCACATGATCCACTGGATAAGCATGTCCATGAAAATCTCAAACACAGAGGGCC

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249549.1 True 420 mRNA 0.42 4 19736033 19737211

Neighbor

gene id symbol gene type direction distance location
adat3 LOC107728938,LOC107714375,LOC107681677,LOC107565014,LOC107660599,LOC107602133 coding downstream 19590 19713485 ~ 19716443 (-)
pms1 pms1,LOC107602147,LOC107728929,LOC107660601,LOC107714373,LOC107565013 coding downstream 27063 19684890 ~ 19708970 (-)
pofut2 LOC107741944,LOC107660604,LOC107714363,LOC107657505,LOC107565035 coding downstream 93100 19636451 ~ 19642933 (-)
abca12 LOC107657499,LOC107714367,LOC107602131,LOC107660608,LOC107741931,LOC107565025 coding downstream 101232 19569168 ~ 19634801 (-)
bard1 LOC107741928,LOC107660605,LOC107602130 coding downstream 167273 19546224 ~ 19568760 (-)
wdr75 wdr75,LOC107660592,LOC107714378,LOC107728907,LOC107657531,LOC107602136,LOC107565028 coding upstream 13331 19750542 ~ 19766793 (-)
obsl1b obsl1b,obsl1,LOC107660652,LOC107602158,LOC107657519,LOC107728922,LOC107714352,LOC107584169,LOC108423904 coding upstream 260264 19997475 ~ 20029805 (-)
calcrla calcrla,LOC107728927,LOC107657513,LOC107602163,LOC107714396 coding upstream 511777 20248988 ~ 20270532 (-)
tfpia LOC107602164,LOC107728931,LOC107714394,LOC107660650,LOC107584163 coding upstream 534009 20271220 ~ 20295378 (-)
LOC122351553 fkbp7,LOC107562709,LOC107717008,LOC107657501,LOC107584168,LOC107714366,LOC107698996 coding upstream 664173 20401384 ~ 20403699 (-)
G71645 NA non-coding downstream 23849 19709384 ~ 19712184 (-)
LOC122351289 NA non-coding downstream 54634 19674731 ~ 19681399 (-)
G71667 cunh2orf88,LOC107728910,LOC107657540,LOC107714370,LOC798500,LOC103027948 non-coding downstream 64869 19667000 ~ 19671164 (-)
LOC122351304 NA non-coding downstream 210443 19519740 ~ 19525590 (-)
LOC122351387 NA non-coding downstream 227948 19496912 ~ 19508085 (-)
G71692 NA non-coding upstream 54036 19791247 ~ 19791560 (-)
G71727 NA non-coding upstream 149964 19887175 ~ 19941547 (-)
G71732 NA non-coding upstream 178988 19916199 ~ 19922691 (-)
G71912 LOC107602164,LOC107660650,LOC107728931 non-coding upstream 425912 20163123 ~ 20630423 (-)
G71919 LOC107728915 non-coding upstream 478209 20215420 ~ 20218047 (-)
ankar ankar,LOC107728908,LOC107660654 other downstream 4239 19719942 ~ 19731794 (-)
LOC122352185 NA other downstream 1166151 18569755 ~ 18569882 (-)
sema5ba sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063 other downstream 1369766 18251236 ~ 18366267 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other downstream 2214473 17364187 ~ 17521560 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other downstream 2480542 17235872 ~ 17255491 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other upstream 59041 19796252 ~ 19829475 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other upstream 96709 19833920 ~ 19852625 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other upstream 144339 19881550 ~ 19893315 (-)
G71938 nab1,LOC107565022 other upstream 751953 20489164 ~ 20503890 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other upstream 1972077 21709288 ~ 21726820 (-)

Expression


Co-expression Network