lnpa (lnpk,lnpa,LOC107742983,LOC107657390,LOC107725829,LOC107600748,LOC107671324,LOC107588227)


Basic Information

Item Value
gene id lnpa
gene name lnpk,lnpa,LOC107742983,LOC107657390,LOC107725829,LOC107600748,LOC107671324,LOC107588227
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4351702 ~ 4361969 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249550.1
GGGAGAACGCGCTTGACCACGTGACAGAGCGGGTGAAGTAGAGGAGGTCCGTGCCGCGCGGGGTTGTGGGAGCAGTTTGATGACGTAGGCGGTGGAAGTACGGGGAAAAATAAGGCGAGTCTGGTCTGGATGATATCTTTTTCCAGGGGTGTCTGGCTTCGGTGTGGAGTAACGAGTAACAGAAGCCAGGCTTAGAGagaaggcctgccctcacaggaTGGGGGCTGTGGTGTCGCGGTGGAGGGCAAAGCCGACCACTGTAGAGGTCTTGGAGGGTCTTGATAAGGATATCCAAGCCCTTGAGGAATACAGAGAGAAGAACCAGAAGCAGCTGAAGTTATGGGTGTACAGGCTGCTGTTGTACTCGGCCCTGCTGTACTTGATAGCCTGCACAGTCGTCTACGTGTGGTATATCCCAGAGCGGATGATAGGAAAACTAATAGTGGCGTCACCGTTCTTGGTATTTCCTCTGCTAGTTTGGCTGCTGAGGAGACTGCTGATTGTTTTGTACAACCGACGGACCGAGAGAAACAATGAAAAGTTAGAAGAGCtgaaagcagagaaaaagaaaataCTGGAGCAGGTAATGGAAACCGAAACCTACAAAAATGCCAAGCTGATTCTGGAACGGTTTGACCCTGACTCTAAGAAAAAGCTTGAGATTGAGTCTCAACCCATTGGCCCGCCTCCGACTCCAAGACAAGGCCAAGAGCTGCGCCAGCGGCTTGTGACCCCTCGTCCCGCTGGGCGTCCTCCGCCCGTTCCCGGCCCCTCGGCCCCGCCCACTCCGCTGTCTGCCCCGGGAGGACCACCTGAAAAAGGACTGTCTGCGTCGACCCCACAGGGTCTGGTCCGGAGGCCTGGAACCCCGGCTGGCACACCCGGCCCAGTCATGGGTGAGTCACGGGGAAGGGCGGGTGATGGTGGCTGTTTGATGGACAGAACGGACGGGCCCGGCCAGGCTCGTAAAATCAGAGGAATGCACCCTCCGGGTCCTCCGCTGGCCAGACCCATCCTCCCCAGAGAGCGAGGTGCCATGGACAGGGTCATTGAGTACCTAGTGGGTGATGGACCTCAGAACAGATTTGCTCTGATATGCCAGCAGTGTTCGTCTCATAACGGCATGGCTTTAAAGGAAGAGTTTGAATATATTGCATTCAGATGTGCCTACTGTTATTTCCTGAACCCGGCCCGGAAGACACGTCCCCAGGCCCCGCGTCTCCCAGAATTCGCTGCAGAAACCAAGATGAGCCAAGACCTCCCtgctgttgccatggagacagACCTGTCTAGCTCTCCACCTGCCCCAGAGGATAAAGCAGCCGGTCCAGGGCGTGTGGAAGCAGAACCTGGAGAGCAGCGAGCAGAAGAGAGCCTCTTAGAGGAGAAGGCGGGAGATCCAGATCCCCTCTCCAGCATCCCGGACAAATCAGACGGAGAGCATGAAGTGTCTGCCATGGAAGTGGAgtagagtgagagagagaacatgCGCCAATATAaacctgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgacttTCTTATTCTTTACCTTACGtatgttactttttaatttctaCACGTTACTGCAGTGTTATTTCATAGATTAGTAAATCCAAGCCAAGTAGGAATTAATAGTTTAGTGGTCAAAGGCATTTttgtgagggtttttttttattattattattgttgttgttgttgttgttgttattattatttgcctTTAGTTAAATCGCAAGTTTAGTTTAATAGTCAGGCAATATAGTGTCTTTGTTTACAATCGAAGCTGTATGTAAAAGCTAAAGCTTAACTTCTCCTATTCTCTTAGTTGACAAGAAAAGCGGCTATTTACACGCGTTTCATTTCATTCTCCACGTAAGCACTGTTTTGTgactgaatgtatttaatattcttatttacaatatgtaataatgcaaaaatgtcctgttcaaaagtatatttatactatttatagtTATGAATGTCCTCTCAGTGCCTGTTTTTGAAGTGTAACGTACATTGGGTGCGATCGGTCCCATGTTTACATGTCTGTTCAGGTATCGTCATAGGAATGTCTGGCTATTTATTACGGCATAGAAACAGCCCTTCAGTGTTCTCAGCCTTATGTGCCTTCATGTTCCACCTGCTTCCAGTGTGAAGAAAAGCAGATGAGTTATCTAATAGCATAATGTGCAGAAATacagtgctgtttttattttgtctacaAGGTTTAATAtgagaaataaagtttttaaaaccgA
>XM_043249551.1
AAGGCATCCTCGAGGGTCTTTTGGTGTGTTTTCGGCGCGTTTATGCGCAGTATCGCGGTATAACACCGCGCGCGCGCGACGGAGAGCACGACGCGTCGCCTGATCGTGTCCGCTGTTTGACTTAGACCGCCTCAAAGTGTCTGGCTTCGGTGTGGAGTAACGAGTAACAGAAGCCAGGCTTAGAGagaaggcctgccctcacaggaTGGGGGCTGTGGTGTCGCGGTGGAGGGCAAAGCCGACCACTGTAGAGGTCTTGGAGGGTCTTGATAAGGATATCCAAGCCCTTGAGGAATACAGAGAGAAGAACCAGAAGCAGCTGAAGTTATGGGTGTACAGGCTGCTGTTGTACTCGGCCCTGCTGTACTTGATAGCCTGCACAGTCGTCTACGTGTGGTATATCCCAGAGCGGATGATAGGAAAACTAATAGTGGCGTCACCGTTCTTGGTATTTCCTCTGCTAGTTTGGCTGCTGAGGAGACTGCTGATTGTTTTGTACAACCGACGGACCGAGAGAAACAATGAAAAGTTAGAAGAGCtgaaagcagagaaaaagaaaataCTGGAGCAGGTAATGGAAACCGAAACCTACAAAAATGCCAAGCTGATTCTGGAACGGTTTGACCCTGACTCTAAGAAAAAGCTTGAGATTGAGTCTCAACCCATTGGCCCGCCTCCGACTCCAAGACAAGGCCAAGAGCTGCGCCAGCGGCTTGTGACCCCTCGTCCCGCTGGGCGTCCTCCGCCCGTTCCCGGCCCCTCGGCCCCGCCCACTCCGCTGTCTGCCCCGGGAGGACCACCTGAAAAAGGACTGTCTGCGTCGACCCCACAGGGTCTGGTCCGGAGGCCTGGAACCCCGGCTGGCACACCCGGCCCAGTCATGGGTGAGTCACGGGGAAGGGCGGGTGATGGTGGCTGTTTGATGGACAGAACGGACGGGCCCGGCCAGGCTCGTAAAATCAGAGGAATGCACCCTCCGGGTCCTCCGCTGGCCAGACCCATCCTCCCCAGAGAGCGAGGTGCCATGGACAGGGTCATTGAGTACCTAGTGGGTGATGGACCTCAGAACAGATTTGCTCTGATATGCCAGCAGTGTTCGTCTCATAACGGCATGGCTTTAAAGGAAGAGTTTGAATATATTGCATTCAGATGTGCCTACTGTTATTTCCTGAACCCGGCCCGGAAGACACGTCCCCAGGCCCCGCGTCTCCCAGAATTCGCTGCAGAAACCAAGATGAGCCAAGACCTCCCtgctgttgccatggagacagACCTGTCTAGCTCTCCACCTGCCCCAGAGGATAAAGCAGCCGGTCCAGGGCGTGTGGAAGCAGAACCTGGAGAGCAGCGAGCAGAAGAGAGCCTCTTAGAGGAGAAGGCGGGAGATCCAGATCCCCTCTCCAGCATCCCGGACAAATCAGACGGAGAGCATGAAGTGTCTGCCATGGAAGTGGAgtagagtgagagagagaacatgCGCCAATATAaacctgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgacttTCTTATTCTTTACCTTACGtatgttactttttaatttctaCACGTTACTGCAGTGTTATTTCATAGATTAGTAAATCCAAGCCAAGTAGGAATTAATAGTTTAGTGGTCAAAGGCATTTttgtgagggtttttttttattattattattgttgttgttgttgttgttgttattattatttgcctTTAGTTAAATCGCAAGTTTAGTTTAATAGTCAGGCAATATAGTGTCTTTGTTTACAATCGAAGCTGTATGTAAAAGCTAAAGCTTAACTTCTCCTATTCTCTTAGTTGACAAGAAAAGCGGCTATTTACACGCGTTTCATTTCATTCTCCACGTAAGCACTGTTTTGTgactgaatgtatttaatattcttatttacaatatgtaataatgcaaaaatgtcctgttcaaaagtatatttatactatttatagtTATGAATGTCCTCTCAGTGCCTGTTTTTGAAGTGTAACGTACATTGGGTGCGATCGGTCCCATGTTTACATGTCTGTTCAGGTATCGTCATAGGAATGTCTGGCTATTTATTACGGCATAGAAACAGCCCTTCAGTGTTCTCAGCCTTATGTGCCTTCATGTTCCACCTGCTTCCAGTGTGAAGAAAAGCAGATGAGTTATCTAATAGCATAATGTGCAGAAATacagtgctgtttttattttgtctacaAGGTTTAATAtgagaaataaagtttttaaaaccgA
>XM_043249552.1
ACCACGTGACAGAGCGGGTGAAGTAGAGGAGGTCCGTGCCGCGCGGGGTTGTGGGAGCAGTTTGATGACGTAGGCGGTGGAAGTACGGGGAAAAATAAGGTGTCTGGCTTCGGTGTGGAGTAACGAGTAACAGAAGCCAGGCTTAGAGagaaggcctgccctcacaggaTGGGGGCTGTGGTGTCGCGGTGGAGGGCAAAGCCGACCACTGTAGAGGTCTTGGAGGGTCTTGATAAGGATATCCAAGCCCTTGAGGAATACAGAGAGAAGAACCAGAAGCAGCTGAAGTTATGGGTGTACAGGCTGCTGTTGTACTCGGCCCTGCTGTACTTGATAGCCTGCACAGTCGTCTACGTGTGGTATATCCCAGAGCGGATGATAGGAAAACTAATAGTGGCGTCACCGTTCTTGGTATTTCCTCTGCTAGTTTGGCTGCTGAGGAGACTGCTGATTGTTTTGTACAACCGACGGACCGAGAGAAACAATGAAAAGTTAGAAGAGCtgaaagcagagaaaaagaaaataCTGGAGCAGGTAATGGAAACCGAAACCTACAAAAATGCCAAGCTGATTCTGGAACGGTTTGACCCTGACTCTAAGAAAAAGCTTGAGATTGAGTCTCAACCCATTGGCCCGCCTCCGACTCCAAGACAAGGCCAAGAGCTGCGCCAGCGGCTTGTGACCCCTCGTCCCGCTGGGCGTCCTCCGCCCGTTCCCGGCCCCTCGGCCCCGCCCACTCCGCTGTCTGCCCCGGGAGGACCACCTGAAAAAGGACTGTCTGCGTCGACCCCACAGGGTCTGGTCCGGAGGCCTGGAACCCCGGCTGGCACACCCGGCCCAGTCATGGGTGAGTCACGGGGAAGGGCGGGTGATGGTGGCTGTTTGATGGACAGAACGGACGGGCCCGGCCAGGCTCGTAAAATCAGAGGAATGCACCCTCCGGGTCCTCCGCTGGCCAGACCCATCCTCCCCAGAGAGCGAGGTGCCATGGACAGGGTCATTGAGTACCTAGTGGGTGATGGACCTCAGAACAGATTTGCTCTGATATGCCAGCAGTGTTCGTCTCATAACGGCATGGCTTTAAAGGAAGAGTTTGAATATATTGCATTCAGATGTGCCTACTGTTATTTCCTGAACCCGGCCCGGAAGACACGTCCCCAGGCCCCGCGTCTCCCAGAATTCGCTGCAGAAACCAAGATGAGCCAAGACCTCCCtgctgttgccatggagacagACCTGTCTAGCTCTCCACCTGCCCCAGAGGATAAAGCAGCCGGTCCAGGGCGTGTGGAAGCAGAACCTGGAGAGCAGCGAGCAGAAGAGAGCCTCTTAGAGGAGAAGGCGGGAGATCCAGATCCCCTCTCCAGCATCCCGGACAAATCAGACGGAGAGCATGAAGTGTCTGCCATGGAAGTGGAgtagagtgagagagagaacatgCGCCAATATAaacctgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgacttTCTTATTCTTTACCTTACGtatgttactttttaatttctaCACGTTACTGCAGTGTTATTTCATAGATTAGTAAATCCAAGCCAAGTAGGAATTAATAGTTTAGTGGTCAAAGGCATTTttgtgagggtttttttttattattattattgttgttgttgttgttgttgttattattatttgcctTTAGTTAAATCGCAAGTTTAGTTTAATAGTCAGGCAATATAGTGTCTTTGTTTACAATCGAAGCTGTATGTAAAAGCTAAAGCTTAACTTCTCCTATTCTCTTAGTTGACAAGAAAAGCGGCTATTTACACGCGTTTCATTTCATTCTCCACGTAAGCACTGTTTTGTgactgaatgtatttaatattcttatttacaatatgtaataatgcaaaaatgtcctgttcaaaagtatatttatactatttatagtTATGAATGTCCTCTCAGTGCCTGTTTTTGAAGTGTAACGTACATTGGGTGCGATCGGTCCCATGTTTACATGTCTGTTCAGGTATCGTCATAGGAATGTCTGGCTATTTATTACGGCATAGAAACAGCCCTTCAGTGTTCTCAGCCTTATGTGCCTTCATGTTCCACCTGCTTCCAGTGTGAAGAAAAGCAGATGAGTTATCTAATAGCATAATGTGCAGAAATacagtgctgtttttattttgtctacaAGGTTTAATAtgagaaataaagtttttaaaaccgA
>XM_043249553.1
GGAGAACGCGCTTGACCACGTGACAGAGCGGGTGAAGTAGAGGAGGTCCGTGCCGCGCGGGGTTGTGGGAGCAGTTTGATGACGTAGGCGGTGGAAGTACGGGGAAAAATAAGGCGAGTCTGGTCTGGATGATATCTTTTTCCAGGGGTGTCTGGCTTCGGTGTGGAGTAACGAGTAACAGAAGCCAGGCTTAGAGagaaggcctgccctcacaggaTGGGGGCTGTGGTGTCGCGGTGGAGGGCAAAGCCGACCACTGTAGAGGTCTTGGAGGGTCTTGATAAGGATATCCAAGCCCTTGAGGAATACAGAGAGAAGAACCAGAAGCAGCTGAAGTTATGGGTGTACAGGCTGCTGTTGTACTCGGCCCTGCTGTACTTGATAGCCTGCACAGTCGTCTACGTGTGGTATATCCCAGAGCGGATGATAGGAAAACTAATAGTGGCGTCACCGTTCTTGGTATTTCCTCTGCTAGTTTGGCTGCTGAGGAGACTGCTGATTGTTTTGTACAACCGACGGACCGAGAGAAACAATGAAAAGTTAGAAGAGCtgaaagcagagaaaaagaaaataCTGGAGCAGGTAATGGAAACCGAAACCTACAAAAATGCCAAGCTGATTCTGGAACGGTTTGACCCTGACTCTAAGAAAAAGCTTGAGATTGAGTCTCAACCCATTGGCCCGCCTCCGACTCCAAGACAAGGCCAAGAGCTGCGCCAGCGGCTTGTGACCCCTCGTCCCGCTGGGCGTCCTCCGCCCGTTCCCGGCCCCTCGGCCCCGCCCACTCCGCTGTCTGCCCCGGGAGGACCACCTGAAAAAGGACTGTCTGCGTCGACCCCACAGGGTCTGGTCCGGAGGCCTGGAACCCCGGCTGGCACACCCGGCCCAGTCATGGGAATGCACCCTCCGGGTCCTCCGCTGGCCAGACCCATCCTCCCCAGAGAGCGAGGTGCCATGGACAGGGTCATTGAGTACCTAGTGGGTGATGGACCTCAGAACAGATTTGCTCTGATATGCCAGCAGTGTTCGTCTCATAACGGCATGGCTTTAAAGGAAGAGTTTGAATATATTGCATTCAGATGTGCCTACTGTTATTTCCTGAACCCGGCCCGGAAGACACGTCCCCAGGCCCCGCGTCTCCCAGAATTCGCTGCAGAAACCAAGATGAGCCAAGACCTCCCtgctgttgccatggagacagACCTGTCTAGCTCTCCACCTGCCCCAGAGGATAAAGCAGCCGGTCCAGGGCGTGTGGAAGCAGAACCTGGAGAGCAGCGAGCAGAAGAGAGCCTCTTAGAGGAGAAGGCGGGAGATCCAGATCCCCTCTCCAGCATCCCGGACAAATCAGACGGAGAGCATGAAGTGTCTGCCATGGAAGTGGAgtagagtgagagagagaacatgCGCCAATATAaacctgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgacttTCTTATTCTTTACCTTACGtatgttactttttaatttctaCACGTTACTGCAGTGTTATTTCATAGATTAGTAAATCCAAGCCAAGTAGGAATTAATAGTTTAGTGGTCAAAGGCATTTttgtgagggtttttttttattattattattgttgttgttgttgttgttgttattattatttgcctTTAGTTAAATCGCAAGTTTAGTTTAATAGTCAGGCAATATAGTGTCTTTGTTTACAATCGAAGCTGTATGTAAAAGCTAAAGCTTAACTTCTCCTATTCTCTTAGTTGACAAGAAAAGCGGCTATTTACACGCGTTTCATTTCATTCTCCACGTAAGCACTGTTTTGTgactgaatgtatttaatattcttatttacaatatgtaataatgcaaaaatgtcctgttcaaaagtatatttatactatttatagtTATGAATGTCCTCTCAGTGCCTGTTTTTGAAGTGTAACGTACATTGGGTGCGATCGGTCCCATGTTTACATGTCTGTTCAGGTATCGTCATAGGAATGTCTGGCTATTTATTACGGCATAGAAACAGCCCTTCAGTGTTCTCAGCCTTATGTGCCTTCATGTTCCACCTGCTTCCAGTGTGAAGAAAAGCAGATGAGTTATCTAATAGCATAATGTGCAGAAATacagtgctgtttttattttgtctacaAGGTTTAATAtgagaaataaagtttttaaaaccgA

Function

symbol description
lnpa Predicted to enable identical protein binding activity. Predicted to be involved in endoplasmic reticulum tubular network maintenance and positive regulation of endoplasmic reticulum tubular network organization. Predicted to be located in endoplasmic reticulum tubular network membrane. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum tubular network. Is expressed in mesenchyme pectoral fin. Orthologous to human LNPK (lunapark, ER junction formation factor).
lnpk Predicted to enable identical protein binding activity. Predicted to be involved in endoplasmic reticulum tubular network maintenance and positive regulation of endoplasmic reticulum tubular network organization. Predicted to be located in endoplasmic reticulum tubular network membrane. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum tubular network. Orthologous to human LNPK (lunapark, ER junction formation factor).

NR:

description
protein lunapark-A-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23292 LNPK; endoplasmic reticulum junction formation protein lunapark

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249550.1 True 2288 mRNA 0.48 13 4351702 4361969
XM_043249551.1 False 2276 mRNA 0.48 13 4351702 4361819
XM_043249552.1 False 2239 mRNA 0.48 13 4351702 4361954
XM_043249553.1 False 2206 mRNA 0.48 13 4351702 4361968

Neighbor

gene id symbol gene type direction distance location
atp5mc3a atp5g3a,atp5g3,LOC108424356,LOC107739460,LOC108266717 coding downstream 129435 4218896 ~ 4222267 (-)
atf2 atf2,LOC107671311,LOC107739459,LOC107657392,LOC107742976,LOC107600703 coding downstream 133208 4197917 ~ 4218494 (-)
chn1 chn1,LOC107742958,LOC107739458,LOC105007244 coding downstream 155435 4158860 ~ 4196267 (-)
gpr155a gpr155,LOC107657393,LOC107600701,LOC107671327 coding downstream 211582 4127366 ~ 4140120 (-)
cir1 cir1,LOC102235890 coding downstream 231659 4074035 ~ 4120043 (-)
evx2 evx2,evx2a,LOC107657379,LOC107671304 coding upstream 5191 4367160 ~ 4371591 (-)
nfe2l2a nfe2l2a,LOC107716922,LOC107725823,LOC107671308,LOC107657385 coding upstream 195157 4557126 ~ 4571116 (-)
prkra LOC107747227,LOC107670311,LOC107560808,LOC107561731,LOC107689486 coding upstream 413026 4774995 ~ 4780677 (-)
casp10 LOC107560797,LOC107561720 coding upstream 419731 4781700 ~ 4791739 (-)
stk24a stk24a,LOC107560805,LOC107747230,LOC107670316,LOC107561729,LOC107689524,LOC107752612,LOC107705591,LOC103357793 coding upstream 490980 4852949 ~ 4859666 (-)
G67665 NA non-coding downstream 134819 4124730 ~ 4216883 (-)
G67605 NA non-coding downstream 304989 4046486 ~ 4046713 (-)
LOC122351402 NA non-coding downstream 328308 3989592 ~ 4023394 (-)
G67597 zak,LOC107657350,LOC107718456,LOC107600726,LOC107671274,LOC107742952,LOC107588248 non-coding downstream 370512 3979275 ~ 3981190 (-)
G67581 NA non-coding downstream 404797 3945319 ~ 3946905 (-)
G67710 NA non-coding upstream 62008 4423977 ~ 4424298 (-)
G67712 NA non-coding upstream 65319 4427288 ~ 4427646 (-)
G67733 NA non-coding upstream 189268 4551237 ~ 4551875 (-)
G67730 NA non-coding upstream 190455 4552424 ~ 4555750 (-)
G67747 NA non-coding upstream 274041 4636010 ~ 4636342 (-)
wipf1a LOC107657348,LOC107600727 other downstream 201463 4142290 ~ 4150239 (-)
G67668 NA other downstream 229599 4120463 ~ 4122103 (-)
dgkh dgkh,LOC107713732,LOC107549907 other downstream 844410 3437756 ~ 3507292 (-)
G67358 gpx4a other downstream 1157210 3189847 ~ 3194492 (-)
serp2 NA other downstream 1306395 3017043 ~ 3045307 (-)
pde11a pde11a,LOC107657382,LOC107671328 other upstream 253873 4615842 ~ 4666654 (-)
LOC122351499 LOC107670334,LOC107747232 other upstream 430455 4792424 ~ 4822965 (-)
LOC122351456 LOC107747234,LOC107560802,LOC107670305,LOC107752600,LOC107689492,LOC107549748,LOC101883674 other upstream 494681 4856650 ~ 4973955 (-)
G67863 farp1,LOC107747234,LOC107670305,LOC107689492,LOC107752600,LOC107549748,LOC101883674 other upstream 597748 4959717 ~ 4983747 (-)
dbi dbi,LOC107560815,LOC107747240,LOC107752581 other upstream 648544 5010513 ~ 5014813 (-)

Expression


Co-expression Network