LOC122352061 (igfbp5b,LOC107656526,LOC107719877,LOC107601375,LOC107739616,LOC107567302)


Basic Information

Item Value
gene id LOC122352061
gene name igfbp5b,LOC107656526,LOC107719877,LOC107601375,LOC107739616,LOC107567302
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 23564379 ~ 23649560 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249556.1
tgtatgtatgtgtgagcGAGCGTCTTTATCATGTCACATCCATGTTGCCTTTTGACGCGTTTCGTCTTGAATCTGCTGGAAAGCAGCTGAGCTTCGTGCACGAATCCGACGCTATACTACCGGCCACAAAGTGCACGGAAGATCTCAGAGGAGCATATCTTCGATTTTGCATGGATTTGTGTTTTGCTCTGCGCTCTTGGCATCACTGCGTAAAAGACTGATCCTATTGccgaggggggaaaaaaggcgCTGGCGCTGCGCCACGATCTGGCAAGTGCGCCTCCCTTCACCGCTGTTTGGCTTATTCATAGTTAGGGGTTTGggtttggctgtttttaaaaaggcaagCACTGCTGTGAAGTTGATCAGTCTGCTCAGAAAACTTCCAGAGGGGAAAGTGTTTTGGAATCGGAAAGTCCAGAATTTCAGTGCGCAACCAATTGCGCACAAACTGGACTATTGGAGAATACCCAAgtgaatcattttacatttttttatatgtatgtatttatataaaaatccaGCGGATTCTTCTTCATCACCTTTTTTTCATCAAagactgtttttattttctcattttttaagACACCCCAACCTGTGCTTTCACTTTGCACGCGGAGTTTTCACTCGAATCTGAGTCAAACGTTCATGCGCTCTCATATCTAGttcttgctctctttttttccccatttaaatCGGACCTCATTCAATTTGAAACGAAGTATGGCTCTTCTTGTGCTGGGTACATTTCTCACGGCGTTGTCCATCAGCGGAGGCTCTTACGTGCCGTGCGAGCCGTGCGATCAGAAGGCGCTCTCCATGTGTCCTCCGGTCCCGGTGGGCTGTCAGCTGGTGAAGGAGCCCGGCTGCGGCTGCTGCTACACTTGCGCTCTGGCGGAGGGGCAGGCGTGCGGGGTGTACACCGGTACATGCACGCACGGACTGCGCTGCCTGCCGCGCAACGGCGAGGAGAAGCCGCTTCACGCCCTGCTGCACGGCAGGGGAGTGTGCACGAACGAGAAGGGATACAAACCACCGCACCCACCCATTGATCGCGAATCAATAGAGCATGATGATACAGTGAAGCCAGACACGACTGAAGACCAGATTCCTAAAATTCCCCTTTACCCCAAACCAGACGTAATCAACAGCAAGAAGCATGCTGCCGTGCGCAAGGACAAGAAGAAACAACAGGAGAAGCATCGGTCACTGGGGTCGATGGACTACTCCCGCCCCATCGACAAACATGAGCCTGAATTTGGTCCCTGCAGAAGGAAGCTGGATGGAATCATTCAAAGTATGAAAGATACCTCCCGCATCATGGCTCTTACCCTCTACCTGCCTAACTGTGACAGGAAGGGTTTCTTCAAGCGCAAACAGTGCAAGCCCTCCCGTGGCCGGAAACGAGGCATCTGCTGGTGCGTGGACAAATACGCGTGGCAGCTGCCCGGCACTGACTACAGCGGCGGTAACATCCAGTGCAAGGATTTGGagaacagcaacaacaacgagTGAGAATCAACCCACCCTGATCACCAGACCTAGGGCCCACCTCCTTGTCCTGTCCCACCAGTCTACCCCGCCAGTCACTTTGAGATTTTGATGCAAAACGACAAAGAAACACAACAGCTATTACAAATACGAACAATCAgactaaaaa

Function

symbol description
igfbp5b Predicted to enable fibronectin binding activity; insulin-like growth factor I binding activity; and insulin-like growth factor II binding activity. Predicted to be involved in regulation of insulin-like growth factor receptor signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including brain; male organism; median fin fold; otic vesicle; and pectoral fin bud. Orthologous to human IGFBP5 (insulin like growth factor binding protein 5).

NR:

description
PREDICTED: insulin-like growth factor-binding protein 5 isoform X1

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG:

id description
K23577 IGFBP5; insulin-like growth factor-binding protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249556.1 True 1660 mRNA 0.50 5 23564379 23649560

Neighbor

gene id symbol gene type direction distance location
gjc4b cx43.4,LOC107704825,LOC107741582,LOC107601378,LOC107688946,LOC107739588 coding downstream 137945 23419262 ~ 23426434 (-)
LOC122351748 LOC107601359,LOC107704822,LOC107741586,LOC107739717,LOC107688954,LOC107601360 coding downstream 153389 23390692 ~ 23410990 (-)
LOC122352042 LOC107704822,LOC107739717,LOC107688954,LOC107601359,LOC107741586,LOC107601360 coding downstream 274240 23281514 ~ 23290139 (-)
hdac4 hdac4,LOC107560613,LOC107601379,LOC107741589 coding downstream 320132 23005838 ~ 23244247 (-)
agr1 agr1,LOC107718316,LOC107692342,LOC107601372,LOC107754004,LOC107695966,LOC107560612 coding downstream 658067 22902448 ~ 22906312 (-)
LOC122351749 NA coding upstream 66549 23716109 ~ 23717055 (-)
LOC122351750 igfbp2b,LOC107601376,LOC107719878,LOC107656525,LOC107739679,LOC107688948,LOC107567301 coding upstream 265121 23914681 ~ 23918652 (-)
cobll1b cobll1,LOC107674769,LOC107755205 coding upstream 332410 23981970 ~ 24029114 (-)
slc38a11 slc38a11,LOC107674763,LOC107677901 coding upstream 379949 24029509 ~ 24038130 (-)
csrnp3 csrnp3,LOC107674773,LOC107722915,LOC107755203,LOC107677900 coding upstream 493106 24142666 ~ 24193802 (-)
G72909 NA non-coding downstream 24276 23537504 ~ 23540103 (-)
G72889 NA non-coding downstream 91651 23472413 ~ 23472728 (-)
G72881 NA non-coding downstream 129903 23434176 ~ 23434476 (-)
LOC122352046 NA non-coding downstream 177302 23380158 ~ 23387077 (-)
LOC122352045 NA non-coding downstream 184323 23361012 ~ 23380056 (-)
G72923 NA non-coding upstream 261893 23911453 ~ 23912036 (-)
G72927 NA non-coding upstream 262613 23912173 ~ 23913886 (-)
G72929 NA non-coding upstream 276663 23926223 ~ 23981238 (-)
G72980 NA non-coding upstream 603802 24253362 ~ 24285690 (-)
G72984 NA non-coding upstream 632431 24281991 ~ 24284165 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other downstream 1053072 22297007 ~ 22511307 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 1340712 22171463 ~ 22223667 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other downstream 1837559 21709288 ~ 21726820 (-)
G71938 nab1,LOC107565022 other downstream 3060489 20489164 ~ 20503890 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 3671064 19881550 ~ 19893315 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 280647 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 294425 23943985 ~ 23960325 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other upstream 570962 24220522 ~ 24280708 (-)
G73201 NA other upstream 1378025 25027585 ~ 25030965 (-)
G73301 NA other upstream 1699218 25348778 ~ 25349640 (-)

Expression


Co-expression Network