hacd2 (hacd2,LOC107660639,LOC107741899,LOC107661144)


Basic Information

Item Value
gene id hacd2
gene name hacd2,LOC107660639,LOC107741899,LOC107661144
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18494086 ~ 18499894 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249567.1
ACCTTCTATGCATGTCAGCAAGGCCACACGCCTTTATTCACTCACCGGGACCATTTGGATGATCCAGTTTTTCTAATGATAGTTCAGTCATGTCGGCACCTGCCATGGGGACCAGCAAAACAGCGCACAGTGATTCCAGTAACAAGAAGAAAAAGGGACCCGGAACGCTGGCCACCGCATATCTGGTCATTTACAACGTGGTTATGACAGCGGGatgGCTGGTCATTGCTGTTGGACTGGTTCGAGCATACCTTGCCAGGGGAAGTTACCATGGTCTTTATTACTCGATAGAGAAGCCCCTAAAATTCTTTCAGACTGGTGCCCTTCTTGAGATATTGCATTGTGCCGTGGGAATTGTTCCCTCCTCTGTGGTCCTGACTGGGTTTCAAGTGATGTCTCGAGTATTCCTTACCTGGGCAGTGACACACAGCGTTAGAGAAGTCCAAAGCGAAGACAGCGTTCTCCTCTTTGTGGTGGCCTGGACAGTCACGGAAATCATCCGTTACTCTTTCTACACCTTCAGCCTGCTCAACCATCTGCCTTACCTCATCAAATGGGCAAGGTACACGTTTTTTATTGTGCTGTACCCCATGGGAGTGGCAggggaacttctgaccatctaCGCCGCGTTGCCATACGTGCAGAAAACAGGGCTCTACTCCATCACCTTGCCTAACAAGTACAACTTCTCCTTCGACTACCACGccttcctcatcctcatcatgGTCTCCTATATCCCCTTATTCCCTCAGCTCTACTTCCACATGATGCGCCAGAGGAAGAAAGTTCTGGGTCACGTGGAGGAGTACAGCAAAGTGGAATAACTCGCTCCGCAGTTGACACACACAGCAGACTGATCGCACCGAAAACGGAAACAAGCGGATAACCTTTAAAAGCCAcactacagattttttttaaggcgTCTTGTCGATTAAACAGGCCAGATATGCAGAATGATTGTTAACGGTACTATTTTGGTCAAGAACTGTTGCGGTTGGCCGTTTTAGGGATTCTGTAACCAAACGAATGGCTTTTCCTCAGTTTAGAGGGAGAGGAATGAGGTTTCCATACTAATACATCAGCTtctgtgtaaaaacatttttatttttgattccaAATGTAGAATTACTGACCAAATATTGTAGCAAATATCACTCAGACAAAGGGCAAAAAAAACAGTTCGCTGCATCTGGTGGCTTTAACCAGAAAAAGTGTCTCATAATTTTCCTGTGTGGTGTGTTTTGTACACTGTATTTCCGACATTTAAATCTAATTGACTTAAATCTCTTGTTTCTCACTCAACTCATTCCTTTGCTTTATATTTGAGTATGATTTGTAACTCAAAACGTATGTGACTTTCACACTGCTTACTTGTCTACTGATTCACATCACGATTACTGttagtgttttctttttgttttgtgctgtgTTTCTTAAAGGATCAATGTTAATCGGTTGTTTTAATCAGTATTGGATATGCATTGTTGATTTGTGGCcgtttgcagaaaaaaaagaggtgtATCACCCAAAGAAATTGGCTGAGTTGCTAAGTCGGACCTCGTAGTCAATACTACTAATGTACTAGATGTGCATTTCTGTCGTAGAAGGAGATTGCAGATGACATTTTTGGAGCTTTTACGGCGGGAGATGTGGAAGTGTTTGGCCGTGAGAGACTCGCACGCCGAGCAGAAGAGAGCACAAGCCTCGGCTAACAGGGGGCCAATTGGATTTGAGTGCCTCCAGTCATGCTTTTCCAATGAGTCAAATCTAATAATGTGGAGGGAAAGCTGGGAGTCAAGACTAACTTAACGCTTCGTTGCCCGTCCACCTAATTGTGAACAGTCAACTTCATCCCTCCCAATGCAAACGAATCTCTCTCGTATTGAAGTGTGAGCCACACTATTACACAGATAGAGTCTTTGCAAACAAAGTGGTAAGCCTGTTCTCCTTATCAAGCCTATTCATGAAAAGATTAGCATGGGATGAATGGAGCGCAACTTTGAATAACACTGCATGTGAAAGTGGTGTGGCTAAACCTCGGTTAGTAGAAGCATGACCctaaactcaaataaaaatgctgacATTGTCAAGATTTTGATATTCAAGTTCTGCATGGGACCAGGCAACTTTGTATGAATagttatatgatatatatttacaataaaccaTAACATGGGAAGCAA

Function

symbol description
hacd2 Predicted to enable 3-hydroxyacyl-CoA dehydratase activity. Predicted to be involved in fatty acid elongation; sphingolipid biosynthetic process; and very long-chain fatty acid biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human HACD2 (3-hydroxyacyl-CoA dehydratase 2).

NR:

description
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2-like

GO: NA

KEGG:

id description
K10703 HACD, PHS1, PAS2; very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249567.1 True 2183 mRNA 0.43 7 18494086 18499894

Neighbor

gene id symbol gene type direction distance location
adcy5 adcy5,LOC107555914,LOC107661140,LOC107660638,LOC107596066,LOC107714401 coding downstream 1213 18427072 ~ 18492873 (-)
hspbap1 LOC107722869,LOC107661136,LOC107660643 coding downstream 288625 18197126 ~ 18205461 (-)
ralba ralba,ralb,LOC107746258,LOC107597482,LOC107596059 coding downstream 455418 18028354 ~ 18038668 (-)
dnajc28 dnajc28,LOC107748188,LOC107673653,LOC107597584,LOC107756751,LOC107656783,LOC107569146 coding downstream 841965 17649975 ~ 17652121 (-)
zp2l1 NA coding downstream 919712 17559528 ~ 17574374 (-)
si:dkey-219c10.4 LOC107741933,LOC108266238,LOC106586425,LOC102795313,LOC101468032,LOC107673728,LOC107660664,LOC107555910 coding upstream 34758 18534652 ~ 18545151 (-)
ccdc93 ccdc93,LOC107741907,LOC107555923,LOC107596073,LOC107714249 coding upstream 126523 18626417 ~ 18633604 (-)
znf142 LOC107741908,LOC107555924,LOC107660628,LOC107714222,LOC107596070,LOC107673749 coding upstream 142576 18642470 ~ 18649055 (-)
tgfbr2l si:dkey-101k6.5,LOC107660622,LOC107741917,LOC107555932,LOC107714146,LOC107673748,LOC107596078 coding upstream 209334 18709228 ~ 18720447 (-)
myl1 myl1,LOC107721018,LOC107673729,LOC107596080,LOC107660614,LOC107555938 coding upstream 385550 18885444 ~ 18890055 (-)
G71293 NA non-coding downstream 267299 18222314 ~ 18226787 (-)
LOC122352098 NA non-coding downstream 758167 17733203 ~ 17735919 (-)
G71194 NA non-coding downstream 801266 17665519 ~ 17692820 (-)
G71190 NA non-coding downstream 832641 17661216 ~ 17661445 (-)
G71175 NA non-coding downstream 848166 17644438 ~ 17645920 (-)
G71339 NA non-coding upstream 8546 18508440 ~ 18510009 (-)
G71341 NA non-coding upstream 11279 18511173 ~ 18511528 (-)
G71389 NA non-coding upstream 108933 18608827 ~ 18697031 (-)
G71400 LOC107555927,LOC107660626,LOC107741910,LOC107660658,LOC107660625,LOC107578255,LOC107714212 non-coding upstream 153733 18653627 ~ 18654751 (-)
G71424 NA non-coding upstream 188604 18688498 ~ 18692089 (-)
sema5ba sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063 other downstream 127819 18251236 ~ 18366267 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other downstream 972526 17364187 ~ 17521560 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other downstream 1238595 17235872 ~ 17255491 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other downstream 1604539 16886753 ~ 16889547 (-)
G70986 pou2f1b,LOC107748141 other downstream 1670311 16817140 ~ 16823775 (-)
LOC122352185 NA other upstream 69861 18569755 ~ 18569882 (-)
ankar ankar,LOC107728908,LOC107660654 other upstream 1220048 19719942 ~ 19731794 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other upstream 1296358 19796252 ~ 19829475 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other upstream 1334026 19833920 ~ 19852625 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other upstream 1381656 19881550 ~ 19893315 (-)

Expression


Co-expression Network