ihha (ihha,LOC107716791,LOC107688738,LOC107721594,LOC107668405,LOC107551082,LOC107602904)


Basic Information

Item Value
gene id ihha
gene name ihha,LOC107716791,LOC107688738,LOC107721594,LOC107668405,LOC107551082,LOC107602904
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7241336 ~ 7247598 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249572.1
CACTTTTGTTTGAGGAGCAGCCAGGCTCGTTCTCTATTTGTGGATCTATGAATGGGAGAGTCTGAGTCCACAGTTCTTACCCGAGACTTGTGTTTGCCCAGCCAGGCGCTGTGAAGCGTTAAAGGGAGCCGGTGGGTATACGACGCACCCAATGTGACCCATGGGGAGGAGTGACAGGCAGGGATAGAGAGGGGCAAAAAACTGGCAGGGTGCGGTCTCAGTTCGCCGGCAACTCAGATCACTTGACGTGCGCCAAAGGACGTGCTCATTCAAAGACAGCAGCCGCAGCGGTCTCTCCGAGTCTGACAGCTCTCCCAGTGTGCGTCGGAGTCACCCCGTATCTCGCGCTCCGAGAATCTGTTAGGTAAATAGATGGACTTGCCTGCTCACTCTCATTTCGGTGATTTTTTTGAGAGACCAGCGTTTCGCATTCTATGGGCACTGAACACTTGGTATCACTGGATCTTTTCTCCGGCGTCTCTCCATGACAGCCTCTGCGTAAAGCGACTTTTACGCACGGACGATGGCGAGGATAAGGGTGTTAAAGAAGTAGAGGTTTTGTCCTCCCCATCTATTACCCCGTGGGGGGGAATAAGGATCTTCCGGGGGGTAGTTTCTCATTGAACGGCGAGCTGTGCCACCGTACCACTCCGTGTCGGAGTGCCCGGCCGGTTGGGGTGGAATGCGTCTCCCCGTGGTGTTTGGGCTCCTCGTCGGCTGCGCCCTGATTTTCGCACCTGTTAACGAGGGCTGTGGGCCGGGGAGGGGACATGGGAAAAGGCGGCCTCCGAAGAAACTGACACCCCTTAATTACAAGCAGTTTAGTCCAAATGTAGCCGAAAAGACGCTGGGAGCCAGTGGGAGACACGAGGGCAAGATCACCAGGACCTCGGAGCGCTTTAAAGAGCTCACACCGAACTACAACCCCGATATCATGTTCAAAGATGAGGAGAACACAGGTGCGGATCGACTCATGACGCAGCGCTGTAAAGATAAGCTGAACTCTCTGGCTATCTCTGTGATGAACATGTGGCCCAAGGTGAAGCTCAGGGTGACCGAGGGTTGGGATGAAGACGGCAATCACTTTGAAGATTCGCTGCATTATGAAGGAAGAGCTGTCGATATCACCACCTCTGATCGCGACCGTAATAAATACGGCATGTTGGCACGTCTCGCGGTGGAGGCCGGATTCGATTGGGTCTACTATGAGTCCAAATCTTACATCCACTGCAGCGTTAAGTCAGAGCACTCTGTGGCTGCAAAAACCGGCGGCTGTTTTCCCGCATCGGCTCGTGTCACCGTTGAGGACGGAAGCGTGAAGACGATGGACAGCTTACGGCCTGGAGAAAAAGTACTCGCTTCGTCGGAGAGCGACGGAAGCGGGCCGCTCATCTACAGCGAAGTCATGCTCTTCTTAGACCGCGATCCCTCCGCAGAGAAGCACTTCTATGCCATCGAGACGGATTCGGGCGCTGAACTGACCTTGACGGCGGCGCATCTCCTGTTTGTATCCGAAGGGAACTGCTCAGGGCCGGTAGCGAGTGCAGAGCTGAAGTCTGTATTTGCTAGCGACGTGCTGCCAGGGCAGTGCGTGGTGTCCACACGAGGACAGCAGGGACATCTGTCCCGGGTCACTAAGATCCGAATACAGGAGGACAAGGGGGTCTTTGCGCCGCTGACCCGCCACGGCACGGTGGTGGTCAATGGCGTGGTTTCCTCCTGCTACGCGGCCGTGGACCAGCACTGGTTGGCTCACTGGGCTTTCGGCCCACTCAGGGTACTTTATAGCTGGGGAGGGACAGTTGGACATCAGGCTGCGGGGATACACTGGTATTCCTCGTTGCTGCACTGGGTTGGGACTCGTGTGCTGGATCCAACACACTTCCATCCCTGGAGCATGATGGACAATGACAGATGAAAACAAGCGAGTCAGCAAGTTTTGGAAGGATCTAACAGAACGCGAAGCAAGAAAGTCCTGAAATGACGAACACAATCAGTTATGACCCCAAATAGACCTTAAAAGACTAGAAAGGATGCAGCTATTCTGTGGGTCGAGCCTCGTTTGAGGAAGTGGACAAAGTTGATCTTTAAAACCCATATTTAACACTTTCAGATGGGTTTTCTATACTGCCTACACTGGAACACTATCACAAATATATCAAGACGCACACATTTCCGCTCGGATATCTCCTATTCAGTctctttctattttatatacattcacTAAACATATCGCTATAGGGGTGGAAGTGGGGAAGCTGTAGATGAATTTGCTTTATACTCAGGTATGCAGTGACTCAACCTCAGGCAATCAGACCAACGCGGCCTGATAAGGTTTGAGACAGAGGAGGAAGTTGTGTTAGAAAAGAAATGAGAGTTGAaggtacacacaaacacgccCATAGAAACATACACTCTTCAACCGGGTTAAGGCCTTTAAACATCAGGAAAATGTACTTTCAGGTCTAGAGCGGTTTTGCATTCATTCCTATGGTCAGTTACATGTTTCTCACTGTAAACGTAGAGGTGTCTGTCCCAACTTAATCAAGTATTTAATGGTCACATTGTACACTGTATTTCTCCATCTAGCATACATAAGGGTGTCTAGTACTTTTATGAAGGCTTCATTCGAACAAATTAAGAGTTTACTCTGTGCAGTGTGTAGCAATGTTTATGCCAGTTTATGTAGTCCTTATGTGTGCTTTATGCAGTAATACTCAGTTTCCCATACAACTTACtgtatttatctgttttgtggcattatttacattttacttaaagatgtcagaaattatataatatttgtaaaactatttaaagatcTATTTTTCAGAATTAAAGATTATGGAAATATC

Function

symbol description
ihha Predicted to enable calcium ion binding activity and patched binding activity. Acts upstream of or within several processes, including enteric nervous system development; intramembranous ossification; and swim bladder morphogenesis. Predicted to be located in plasma membrane. Predicted to be active in extracellular space. Is expressed in several structures, including caudal fin skeleton; cranium; digestive system; pneumatic duct; and swim bladder bud. Human ortholog(s) of this gene implicated in acrocapitofemoral dysplasia; brachydactyly type A1; retinopathy of prematurity; and syndactyly type 1. Orthologous to human IHH (Indian hedgehog signaling molecule).

NR:

description
PREDICTED: indian hedgehog protein

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0048795 swim bladder morphogenesis biological_process
GO:0007267 cell-cell signaling biological_process
GO:0016539 intein-mediated protein splicing biological_process
GO:0006508 proteolysis biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0001957 intramembranous ossification biological_process
GO:0005576 extracellular region cellular_component
GO:0005886 plasma membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249572.1 True 2855 mRNA 0.50 3 7241336 7247598

Neighbor

gene id symbol gene type direction distance location
LOC122351345 si:dkey-4e7.3,LOC107688734,LOC107602908,LOC107716768 coding upstream 87370 7143119 ~ 7153966 (+)
LOC122351346 si:dkey-4e7.3,LOC107688734,LOC107602908,LOC107716768 coding upstream 87572 7149931 ~ 7153764 (+)
inpp4aa inpp4a,inpp4aa,LOC107676472,LOC107688733,LOC107602877,LOC107721597 coding upstream 98688 7117546 ~ 7142648 (+)
mfsd9 LOC107716769,LOC107688732,LOC107602885,LOC107551077,LOC107721579,LOC107676555 coding upstream 134974 7100429 ~ 7106362 (+)
fhl2a fhl2a,fhl2,LOC107716797,LOC107676452,LOC107688730,LOC107721574,LOC108266723 coding upstream 277290 6956521 ~ 6964046 (+)
tmem198a tmem198a,LOC107688741,LOC107716788,LOC107602903,LOC107551083,LOC107721592,LOC108423970,LOC107668403 coding downstream 23764 7271362 ~ 7291542 (+)
ptprna ptprna,LOC107551086,LOC107688743,LOC107716786,LOC107602900,LOC107668387,LOC107721560 coding downstream 57242 7304840 ~ 7328592 (+)
mnx2a mnx2a,LOC107551068,LOC107688780,LOC107602884,LOC107716783,LOC107668369,LOC107721589 coding downstream 116366 7363964 ~ 7366993 (+)
cfap65 cfap65,LOC107688747,LOC107668360,LOC107716758,LOC107735777 coding downstream 120066 7367664 ~ 7380524 (+)
LOC122351251 LOC107716765,LOC107721581,LOC107551069,LOC107668359 coding downstream 133220 7380818 ~ 7383202 (+)
G68405 NA non-coding upstream 41519 7199269 ~ 7199817 (+)
G68309 NA non-coding upstream 245480 6991833 ~ 6995856 (+)
G68304 si:dkeyp-118h3.5,gpr45,LOC107602888,LOC107688775,LOC107716773,LOC107676540,LOC107721584,LOC107551066 non-coding upstream 266635 6963155 ~ 6974701 (+)
G68296 nck2a,nck2,LOC107688727,LOC107602910,LOC105022090,LOC107716798 non-coding upstream 298015 6907738 ~ 6943321 (+)
G68254 NA non-coding upstream 533143 6707841 ~ 6708193 (+)
G68401 NA non-coding downstream 9082 7256680 ~ 7259394 (+)
G68424 NA non-coding downstream 14943 7262541 ~ 7263713 (+)
G68397 desma,LOC107688742,LOC107602901,LOC107716787 non-coding downstream 33169 7280767 ~ 7301495 (+)
G68435 NA non-coding downstream 87893 7335491 ~ 7336359 (+)
G68446 NA non-coding downstream 605883 7853481 ~ 7854278 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 1268213 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 1355583 5883927 ~ 5885753 (+)
trnam-cau_112 NA other upstream 1783807 5457458 ~ 5457529 (+)
trnar-ccu_65 NA other upstream 1784073 5457191 ~ 5457263 (+)
trnam-cau_111 NA other upstream 1784493 5456772 ~ 5456843 (+)
si:ch211-167j6.3 NA other downstream 1093697 8341295 ~ 8342751 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other downstream 1183513 8431111 ~ 8433483 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other downstream 1213146 8460744 ~ 8506143 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 1615789 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 1619499 8867097 ~ 8871633 (+)

Expression


Co-expression Network