si:ch1073-416j23.1 (si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448)


Basic Information

Item Value
gene id si:ch1073-416j23.1
gene name si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9142592 ~ 9150093 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249573.1
GTGACGCATTTAAAGCGGTTTGTTTGAGTTTGGATCACCTACTGAAGCGATCATGGGGGATCAGTTTATACGAGAAGTCCTCAGTCTGTGTTTGCAAAGGCTTGCTATTGAAGAAGCGTCCAACTCGGAGCTCGAGCTCATTGAGGTGGTGAGGCATTTTGAAACTGCCCGGAAAAAATGGCTTCACGCAGAACTGgagttaaaaaaacagaaagagctcCTGGTAAAATCTGATGTGGCTCGAGCTGCTCTGGAGGTCAAGCTCAAACATGCACGGAACCAGTTGGACGTGGAGATCAAGAAGCGCTACAAAGCTGAAGCGGACTACCAGTGCCTGGAGCGGCAGATGCAGTTGATATGTGACGTACTGGTGCATGACAGCAAGTCAAGCGCTTGCCTCAACGATGAGCAGAGGTCAATGCTGACCAGCTTCAGTCACAAAGGAGCCAGTGTCCCACAACACAGAGGGAAACGGTTATCGGTGATTGATGAGTCCTCCTTCCTGTCGCATTCAGACATTAGTTATGACAGAACGGATGATGATTTGGACTTGGACAACACAGCGTTTGTTAAGCCTCTCAAGTCAAGAGCTCGCGAGAGAAGACGTTCATCAATGGGACCAAGTGTCGGTCCTCCAATTCAAAAACGAGGAAGAGTAAGCGGTCGTTCAGGAGATCAGCTGGGGTCTAGACCACTGGAGAAGGAAATCGAGACGACTGTTGTGAAGGCGTCTGTCACTACCCCGGAGACTAGAGGTCAGATTCACATGGTTATAGACATAACCCAGGAGACTCCAGAATATCAGTCCAGGGCTctcagaaatgaacattttcctTCTGTTGATGAACAAACGTCTGTGTGGGCACACAGTGAAGtcacagaggctgaaacagtcGTTGAAATGGAGGTGAGCGCCCCCCAGCCAGCCGTCCCTCAGGACCTCACGCCCACCGTGGATAAGACTTTGCAGCATGTTTTCCAGCAAAAAACAGTGATTCGTCCAGAGACATGCATGCCTTGTGGGAAGAGGATTCGCTTTGGGAAGGTGGCCATAAAATGCAGAGACTGTCGAGTGGTGAGCCATCCTGAGTGTAAACAGCTATGTGCGGATAAATGCAGTCCTATTGCTCACGGTTCAGCACAGTCCAACGAGGAGACTTTAGAGAGCTTCGCCCCCTCCACACGTCCAAGGATTCCCTCTCTGATTGTTCAGTGTGTTCATGAAATTGAGAGAAGAGGACTTGAAGAGAAGGGTATTTACAGAGTGCCTGGAGGAGAGCGGATGGTAAAGGAACTGAGGGAGAAATATGTGTCTGGGAAAGGCCCTCTGATGCTCCACAAAGTAGAAGAGGTTCATGCTGTCTGTGGACTCCTCAAAGACTTCCTGAGGAAACTCAAGGAGCCTCTCATAACATTTAAGCTTCACAGAACATTTATGGAAGCTTCTGAGATGGCTGATGAAGACAAGAGCAtagaaacattaataaagacTATCAAAGAGTTGCCGCAGCCAAACAAAGACACCCTGGCCTTCCTGATACTGCATTTGCAGAGAGTAATGCAGAGTCCGACGTGTCAGATGGACCAGAATAACTTATCCAGAGTGTTTGGGCCCACTGTCATTGGTCATGGGTTGCTAGAACCTTCTCCCATGACTATTATGAGAGACACAAACACCCAACCCAAAGTAGTAGCTCGGTTTTTGTCCTTCCCCTCAGATTTCTGGGAAGGCCTTCTAGCTGAGAAGGCGGATCCGCTCATGCCTTCTGTGGTGGATTCCAACGTTGCCAGTGTCTGTCCAAGCACTAGCAAAGGAACAGATAAGATATTCAAACCTCTGACCTCTCCTGAGCTGAGCAAATACTCTAAGACTACATCCGGTGGCTCAATAAAAGGTCGGATCAAGCACTTTGGTGGCACTTTCAATAACTCaagcaaaccaaaaaatgaaccaggaaaaaagaaattcttCACTTCCCCaaaatgatttgtgtgtgtatataagtgtATATTTGTGGTGCAGAGGGAACTTTTTCACTCAAACCATGAAATATGAGACTATACTGTGTATTTTCTACAGAATGTTTGAATCTATTTATTATACATAGGAGATGTCCTGCAAAATATCTAAAGGTGGTATGAACACAGGGtgaaatttgaaataaactAGATgaattcatgttgtttttgtgggtttttaATAAGGGTAGTATCTGCACTAATGCCTTCAAAAGTTAggcagtattttatatatttataaataaatattagttgccaaaatg
>XM_043249574.1
GTGACGCATTTAAAGCGGTTTGTTTGAGTTTGGATCACCTACTGAAGCGATCATGGGGGATCAGTTTATACGAGAAGTCCTCAGTCTGTGTTTGCAAAGGCTTGCTATTGAAGAAGCGTCCAACTCGGAGCTCGAGCTCATTGAGGTGGTGAGGCATTTTGAAACTGCCCGGAAAAAATGGCTTCACGCAGAACTGgagttaaaaaaacagaaagagctcCTGGTAAAATCTGATGTGGCTCGAGCTGCTCTGGAGGTCAAGCTCAAACATGCACGGAACCAGTTGGACGTGGAGATCAAGAAGCGCTACAAAGCTGAAGCGGACTACCAGTGCCTGGAGCGGCAGATGCAGTTGATATGTGACGTACTGGTGCATGACAGCAAGTCAAGCGCTTGCCTCAACGATGAGCAGAGGTCAATGCTGACCAGCTTCAGTCACAAAGGAGCCAGTGTCCCACAACACAGAGGGAAACGGTTATCGGTGATTGATGAGTCCTCCTTCCTGTCGCATTCAGACATTAGTTATGACAGAACGGATGATGATTTGGACTTGGACAACACAGCGTTTGTTAAGCCTCTCAAGTCAAGAGCTCGCGAGAGAAGACGTTCATCAATGGGACCAAGTGTCGGTCCTCCAATTCAAAAACGAGGAAGAGTAAGCGGTCGTTCAGGAGATCAGCTGGGGTCTAGACCACTGGAGAAGGAAATCGAGACGACTGTTGTGAAGGCGTCTGTCACTACCCCGGAGACTAGAGGTCAGATTCACATGGTTATAGACATAACCCAGGAGACTCCAGAATATCAGTCCAGGGCTctcagaaatgaacattttcctTCTGTTGATGAACAAACGTCTGTGTGGGCACACAGTGAAGtcacagaggctgaaacagtcGTTGAAATGGAGGTGAGCGCCCCCCAGCCAGCCGTCCCTCAGGACCTCACGCCCACCGTGGATAAGACTTTGCAGCATGTTTTCCAGCAAAAAACAGTGATTCGTCCAGAGACATGCATGCCTTGTGGGAAGAGGATTCGCTTTGGGAAGGTGGCCATAAAATGCAGAGACTGTCGAGTGGTGAGCCATCCTGAGTGTAAACAGCTATGTGCGGATAAATGCAGTCCTATTGCTCACGGTTCAGCACAGTCCAACGAGGAGACTTTAGAGAGCTTCGCCCCCTCCACACGTCCAAGGATTCCCTCTCTGATTGTTCAGTGTGTTCATGAAATTGAGAGAAGAGGACTTGAAGAGAAGGGTATTTACAGAGTGCCTGGAGGAGAGCGGATGGTAAAGGAACTGAGGGAGAAATATGTGTCTGGGAAAGGCCCTCTGATGCTCCACAAAGTAGAAGAGGTTCATGCTGTCTGTGGACTCCTCAAAGACTTCCTGAGGAAACTCAAGGAGCCTCTCATAACATTTAAGCTTCACAGAACATTTATGGAAGCTTCTGAGATGGCTGATGAAGACAAGAGCAtagaaacattaataaagacTATCAAAGAGTTGCCGCAGCCAAACAAAGACACCCTGGCCTTCCTGATACTGCATTTGCAGAGAGTAATGCAGAGTCCGACGTGTCAGATGGACCAGAATAACTTATCCAGAGTGTTTGGGCCCACTGTCATTGGTCATGGGTTGCTAGAACCTTCTCCCATGACTATTATGAGAGACACAAACACCCAACCCAAAGTAGTAGCTCGGTTTTTGTCCTTCCCCTCAGATTTCTGGGAAGGCCTTCTAGCTGAGAAGGCGGATCCGCTCATGCCTTCTGTGGTGGATTCCAACGTTGCCAGTGTCTGTCCAAGCACTAGCAAAGATAAGATATTCAAACCTCTGACCTCTCCTGAGCTGAGCAAATACTCTAAGACTACATCCGGTGGCTCAATAAAAGGTCGGATCAAGCACTTTGGTGGCACTTTCAATAACTCaagcaaaccaaaaaatgaaccaggaaaaaagaaattcttCACTTCCCCaaaatgatttgtgtgtgtatataagtgtATATTTGTGGTGCAGAGGGAACTTTTTCACTCAAACCATGAAATATGAGACTATACTGTGTATTTTCTACAGAATGTTTGAATCTATTTATTATACATAGGAGATGTCCTGCAAAATATCTAAAGGTGGTATGAACACAGGGtgaaatttgaaataaactAGATgaattcatgttgtttttgtgggtttttaATAAGGGTAGTATCTGCACTAATGCCTTCAAAAGTTAggcagtattttatatatttataaataaatattagttgccaaaatg
>XR_006251841.1
GTGACGCATTTAAAGCGGTTTGTTTGAGTTTGGATCACCTACTGAAGCGATCATGGGGGATCAGTTTATACGAGAAGTCCTCAGTCTGTGTTTGCAAAGGCTTGCTATTGAAGAAGCGTCCAACTCGGAGCTCGAGCTCATTGAGGTGGTGAGGCATTTTGAAACTGCCCGGAAAAAATGGCTTCACGCAGAACTGgagttaaaaaaacagaaagagctcCTGGTAAAATCTGATGTGGCTCGAGCTGCTCTGGAGGTCAAGCTCAAACATGCACGGAACCAGTTGGACGTGGAGATCAAGAAGCGCTACAAAGCTGAAGCGGACTACCAGTGCCTGGAGCGGCAGATGCAGTTGATATGTGACGTACTGGTGCATGACAGCAAGTCAAGCGCTTGCCTCAACGATGAGCAGAGGTCAATGCTGACCAGCTTCAGTCACAAAGGAGCCAGTGTCCCACAACACAGAGGGAAACGGTTATCGGTGATTGATGAGTCCTCCTTCCTGTCGCATTCAGACATTAGTTATGACAGAACGGATGATGATTTGGACTTGGACAACACAGCGTTTGTTAAGCCTCTCAAGTCAAGAGCTCGCGAGAGAAGACGTTCATCAATGGGACCAAGTGTCGGTCCTCCAATTCAAAAACGAGGAAGAGTAAGCGGTCGTTCAGGAGATCAGCTGGGGTCTAGACCACTGGAGAAGGAAATCGAGACGACTGTTGTGAAGGCGTCTGTCACTACCCCGGAGACTAGAGGTCAGATTCACATGGTTATAGACATAACCCAGGAGACTCCAGAATATCAGTCCAGGGCTctcagaaatgaacattttcctTCTGTTGATGAACAAACGTCTGTGTGGGCACACAGTGAAGtcacagaggctgaaacagtcGTTGAAATGGAGGTGAGCGCCCCCCAGCCAGCCGTCCCTCAGGACCTCACGCCCACCGTGGATAAGACTTTGCAGCATGTTTTCCAGCAAAAAACAGTGATTCGTCCAGAGACATGCATGCCTTGTGGGAAGAGGATTCGCTTTGGGAAGGTGGCCATAAAATGCAGAGACTGTCGAGTGGTGAGCCATCCTGAGTGTAAACAGCTATGTGCGGATAAATGCAGTCCTATTGCTCACGGTTCAGCACAGTCCAACGAGGAGACTTTAGAGAGCTTCGCCCCCTCCACACGTCCAAGGATTCCCTCTCTGATTGTTCAGTGTGTTCATGAAATTGAGAGAAGAGGACTTGAAGAGAAGGGTATTTACAGAGTGCCTGGAGGAGAGCGGATGGTAAAGGAACTGAGGGAGAAATATGTGTCTGGGAAAGGCCCTCTGATGCTCCACAAAGTAGAAGAGGTTCATGCTGTCTGTGGACTCCTCAAAGACTTCCTGAGGAAACTCAAGGAGCCTCTCATAACATTTAAGCTTCACAGAACATTTATGGAAGCTTCTGAGATGGCTGATGAAGACAAGAGCAtagaaacattaataaagacTATCAAAGAGTTGCCGCAGCCAAACAAAGACACCCTGGCCTTCCTGATACTGCATTTGCAGAGAGTAATGCAGAGTCCGACGTGTCAGATGGACCAGAATAACTTATCCAGAGTGTTTGGGCCCACTGTCATTGGTCATGGGTTGCTAGAACCTTCTCCCATGACTATTATGAGAGACACAAACACCCAACCCAAAATTTCTGGGAAGGCCTTCTAGCTGAGAAGGCGGATCCGCTCATGCCTTCTGTGGTGGATTCCAACGTTGCCAGTGTCTGTCCAAGCACTAGCAAAGGAACAGATAAGATATTCAAACCTCTGACCTCTCCTGAGCTGAGCAAATACTCTAAGACTACATCCGGTGGCTCAATAAAAGGTCGGATCAAGCACTTTGGTGGCACTTTCAATAACTC
>XR_006251842.1
GTGACGCATTTAAAGCGGTTTGTTTGAGTTTGGATCACCTACTGAAGCGATCATGGGGGATCAGTTTATACGAGAAGTCCTCAGTCTGTGTTTGCAAAGGCTTGCTATTGAAGAAGCGTCCAACTCGGAGCTCGAGCTCATTGAGGTGGTGAGGCATTTTGAAACTGCCCGGAAAAAATGGCTTCACGCAGAACTGgagttaaaaaaacagaaagagctcCTGGTAAAATCTGATGTGGCTCGAGCTGCTCTGGAGGTCAAGCTCAAACATGCACGGAACCAGTTGGACGTGGAGATCAAGAAGCGCTACAAAGCTGAAGCGGACTACCAGTGCCTGGAGCGGCAGATGCAGTTGATATGTGACGTACTGGTGCATGACAGCAAGTCAAGCGCTTGCCTCAACGATGAGCAGAGGTCAATGCTGACCAGCTTCAGTCACAAAGGAGCCAGTGTCCCACAACACAGAGGGAAACGGTTATCGGTGATTGATGAGTCCTCCTTCCTGTCGCATTCAGACATTAGTTATGACAGAACGGATGATGATTTGGACTTGGACAACACAGCGTTTGTTAAGCCTCTCAAGTCAAGAGCTCGCGAGAGAAGACGTTCATCAATGGGACCAAGTGTCGGTCCTCCAATTCAAAAACGAGGAAGAGTAAGCGGTCGTTCAGGAGATCAGCTGGGGTCTAGACCACTGGAGAAGGAAATCGAGACGACTGTTGTGAAGGCGTCTGTCACTACCCCGGAGACTAGAGGTCAGATTCACATGGTTATAGACATAACCCAGGAGACTCCAGAATATCAGTCCAGGGCTctcagaaatgaacattttcctTCTGTTGATGAACAAACGTCTGTGTGGGCACACAGTGAAGtcacagaggctgaaacagtcGTTGAAATGGAGGTGAGCGCCCCCCAGCCAGCCGTCCCTCAGGACCTCACGCCCACCGTGGATAAGACTTTGCAGCATGTTTTCCAGCAAAAAACAGTGATTCGTCCAGAGACATGCATGCCTTGTGGGAAGAGGATTCGCTTTGGGAAGGTGGCCATAAAATGCAGAGACTGTCGAGTGGTGAGCCATCCTGAGTGTAAACAGCTATGTGCGGATAAATGCAGTCCTATTGCTCACGGTTCAGCACAGTCCAACGAGGAGACTTTAGAGAGCTTCGCCCCCTCCACACGTCCAAGGATTCCCTCTCTGATTGTTCAGTGTGTTCATGAAATTGAGAGAAGAGGACTTGAAGAGAAGGGTATTTACAGAGTGCCTGGAGGAGAGCGGATGGTAAAGGAACTGAGGGAGAAATATGTGTCTGGGAAAGGCCCTCTGATGCTCCACAAAGTAGAAGAGGTTCATGCTGTCTGTGGACTCCTCAAAGACTTCCTGAGGAAACTCAAGGAGCCTCTCATAACATTTAAGCTTCACAGAACATTTATGGAAGCTTCTGAGATGGCTGATGAAGACAAGAGCAtagaaacattaataaagacTATCAAAGAGTTGCCGCAGCCAAACAAAGACACCCTGGCCTTCCTGATACTGCATTTGCAGAGAGTAATGCAGAGTCCGACGTGTCAGATGGACCAGAATAACTTATCCAGAGTGTTTGGGCCCACTGTCATTGGTCATGGGTTGCTAGAACCTTCTCCCATGACTATTATGAGAGACACAAACACCCAACCCAAAATTTCTGGGAAGGCCTTCTAGCTGAGAAGGCGGATCCGCTCATGCCTTCTGTGGTGGATTCCAACGTTGCCAGTGTCTGTCCAAGCACTAGCAAAGATAAGATATTCAAACCTCTGACCTCTCCTGAGCTGAGCAAATACTCTAAGACTACATCCGGTGGCTCAATAAAAGGTCGGATCAAGCACTTTGGTGGCACTTTCAAT

Function

symbol description
si:ch1073-416j23.1 Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
rac GTPase-activating protein 1-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249573.1 True 2282 mRNA 0.46 16 9142592 9150093
XM_043249574.1 False 2276 mRNA 0.46 16 9142592 9150093
XR_006251841.1 False 1901 transcript 0.48 15 9142592 9149666
XR_006251842.1 False 1890 transcript 0.48 15 9142592 9149661

Neighbor

gene id symbol gene type direction distance location
chpfa chpfa,LOC107749870,LOC107663851,LOC107571864,LOC107672254,LOC107743933 coding upstream 165593 8966861 ~ 8976999 (+)
umps umps coding upstream 310690 8827690 ~ 8831902 (+)
itgav itgav,LOC107663834,LOC107672211,LOC107752904 coding upstream 318201 8801297 ~ 8824391 (+)
zc3h15 zc3h15,LOC107562108,LOC107663835,LOC107749874,LOC107752875,LOC107672221 coding upstream 344657 8793317 ~ 8797935 (+)
znf804a znf804a,LOC107562107,LOC107749875,LOC107752876,LOC107672201,LOC107663892,LOC107560471 coding upstream 440297 8651167 ~ 8702295 (+)
hnmt hnmt,LOC107751616,LOC107720324,LOC107663827,LOC107658225,LOC107577691,LOC107558040 coding downstream 420307 9570400 ~ 9574754 (+)
spopla spopla,LOC107751611,LOC107556446,LOC107720326,LOC107558043,LOC107658226,LOC107663914 coding downstream 451893 9601986 ~ 9610746 (+)
LOC122351877 ugt1a7,ugt1a5,ugt1a6,ugt1a2,LOC107663839,LOC107556441,LOC107732349,LOC107658228,LOC107658227,LOC107558044,LOC107720327 coding downstream 478521 9628614 ~ 9652625 (+)
LOC122351880 ugt1a4,LOC107663839,LOC107556441 coding downstream 483060 9633153 ~ 9636711 (+)
LOC122351879 LOC107558046,LOC107658227,LOC107558044,LOC107720327 coding downstream 487298 9637391 ~ 9639325 (+)
G68879 asic4a,asic4,LOC107672268,LOC107663852,LOC107560474,LOC107749871,LOC107571863 non-coding upstream 64055 9047460 ~ 9078537 (+)
G68880 NA non-coding upstream 77916 9063120 ~ 9064676 (+)
LOC122352063 NA non-coding upstream 282213 8859473 ~ 8860379 (+)
G68808 NA non-coding upstream 315546 8826212 ~ 8827046 (+)
LOC122351403 NA non-coding upstream 527608 8600724 ~ 8614984 (+)
G68895 NA non-coding downstream 26231 9176324 ~ 9178926 (+)
G68896 NA non-coding downstream 30658 9180751 ~ 9184568 (+)
G68897 NA non-coding downstream 30811 9180904 ~ 9194303 (+)
G68900 NA non-coding downstream 90845 9240938 ~ 9241387 (+)
G68901 NA non-coding downstream 105239 9255332 ~ 9412735 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other upstream 270959 8867097 ~ 8871633 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other upstream 276287 8863387 ~ 8866305 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other upstream 636449 8460744 ~ 8506143 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other upstream 709109 8431111 ~ 8433483 (+)
si:ch211-167j6.3 NA other upstream 799841 8341295 ~ 8342751 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other downstream 5952 9156045 ~ 9160821 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other downstream 293032 9443125 ~ 9566997 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other downstream 942257 10092350 ~ 10113356 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other downstream 1017243 10167336 ~ 10174783 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other downstream 1178638 10328731 ~ 10395230 (+)

Expression


Co-expression Network