gmppaa (gmppaa,LOC107556449,LOC105902665,LOC106581839)


Basic Information

Item Value
gene id gmppaa
gene name gmppaa,LOC107556449,LOC105902665,LOC106581839
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9150192 ~ 9155280 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249576.1
cCTTCCAGTACTTCCGGAACTGTCAACGCGTGAACTCATTAGATTAGATATAAACTGCTGTCATGTTGTTTGATTTGGAATTGGGtagataaacaaatattttctttgtattttttgcacGTTAAAACCAAACATGGAATGACATTTATGCATCAAATCGATTTACTGAAGGCTCACTGATCGACCTCAGCTTACATCAACATCAGCTGTATTTTTAGAGCTTTTGGATTTTGGggcataattatatatataataagaacaAGTAATCATGCTGAAAGCTGTTATTCTTATCGGAGGTCCTCAAAAAGGCACCCGGTTTCGTCCTCTGTCTTTCGAGGTGCCCAAACCTCTGTTTCCAGTGGCTGGAGTGCCAATGCTACAACATCACATTGAAGCCTGCTCTAAGctTCCAAATATGAAGGAGATCTTGCTTATTGGCTTTTATCAGCCCAATGAAGAACTAAACAGATTTTTGTCATGCGCCCAACAAGACTTCAAAATATCAATACGATACCTTCAGGAGTACGCTGCTCTGGGCACTGGAGGAGGAATTTACCATTTCAGAGATCAGATTCTGTCTGGCAGTCCAGAAGCATTTTTTGTCATGAATGCTGACGTGTGCTCAGAGTTTCCTCTTCCAGAGATGCTGGACTTCCAGAAGGAGCATGGAGACGCTTACAGCTTTGTCATCCTTGGTACCACGGCTAACAGAAAACAGTCCCTGAACTACGGCTGCATTGTTGAGAATGAACAAACTGATGAGGTCTTGCATTATGTCGAAAAGCCCAGCACCTTCGTGAGTGACATAATCAACTGTGGGATATACCTGTTCACTCCGGAGATATTCCAGCACATTGGAGAGGTTTTCCAGAAGAACCAACAGGACATGCTCTTATATTACGATGAGGGAGAGGAGCAGTCCAACGGCTGGCACCGGGCAGAGGTGATCCGTCTGGAGCAGGACATCTTTACGGCGCTGGCAGGCCAAGGCAAATTATATGTGTACAAAACAGACCTCTTCTGGAGCCAAATCAAATCTGCAGGATCTGCGATCTATGCGAGCCGTTTGTATCTTAGCCAGTATCACACAACACATCCAGAGAGGTTAGCTACTAATAGAGAAGGAGGGCCAAAGACCAGAGgacATGTTTATATACATCCAACTGCCAATATAGATCCAACTGCTGTGttaggTCCAAATGTGTCCATAGGAACAGGCGTAACGATCGGTGCAGGAGTTCGCGTAAGGGAGTCCATCATCCTCCACGGTGCTACTTTACAGGATCACAGCTGTGTGTTGAACAGTATTGTGGGTTGGGGCAGCACCATTGGCAAATGGTCCAGAGTAGAAGGGACCCCTAGTGACCCGAATCCTAATGACCCATATGCCAAAATTGACAGCGAGACACTGTTCAGAGATGGAAAACTAACACCGTCCATTACAATTCTAgGCTGTAATGTAAATATCCCATCGGAGGTCATCATACTCAACTCCATCGTCCTGCCACATAAAGACCTCAACAGAAGCTTCAAAAACCAGATCATATTATAGGTTCAATCATTTGTACCTGTCagtcttatttaaataaaacaggtATTTGAAAATGATGGATGAATCATCTGAAGATTCAGTGGCATTTGTGTTGATGTCTGCTACTGTAATTTGCATTTACCATTGTACAGTGTTACAGTGTAGAATGTCTTTGTCAAACTGTTTCTGAAATGacttgaaattaattttatttacagcttGTTGGCTCCCTCTTGCCAGTGAAACGTCAAAGATATTCAAAAAAAGCTGCTGTTTATTTGTGCAGTCTGTTACTATTTGTTCTTACAGCATTTAACTTgccatgaaaaaaacaaaaatgaagacaaatgGTAAAATCTTGTAATTGGATACAAGTTGTGTtggtaattgttttaaataattgatgtTTCTGTGACTGCTCGCTGTATGAAAGCTGAGTGCAGTGCAAGAGTCAGACGTctgcaataaattatattttgattaagtCACAAAAGGTAATAAAGTAATTTACTGCTGCCCTTGTAGAAAA
>XM_043249577.1
cCTTCCAGTACTTCCGGAACTGTCAACGCGTGAACTCATTAGATTAGATATAAACTGCTGTCATGTTGTTTGATTTGGAATTGGGtagataaacaaatattttctttgtattttttgcacGTTAAAACCAAACATGGAATGACATTTATGCATCAAATCGATTTACTGAAGGCTCACTGATCGACCTCAGCTTACATCAACATCAGCTGTATTTTTAGAGCTTTTGGATTTTGGggcataattatatatataataagaacaAGTAATCATGCTGAAAGCTGTTATTCTTATCGGAGGTCCTCAAAAAGGCACCCGGTTTCGTCCTCTGTCTTTCGAGGTGCCCAAACCTCTGTTTCCAGTGGCTGGAGTGCCAATGCTACAACATCACATTGAAGCCTGCTCTAAGctTCCAAATATGAAGGAGATCTTGCTTATTGGCTTTTATCAGCCCAATGAAGAACTAAACAGATTTTTGTCATGCGCCCAACAAGACTTCAAAATATCAATACGATACCTTCAGGAGTACGCTGCTCTGGGCACTGGAGGAGGAATTTACCATTTCAGAGATCAGATTCTGTCTGGCAGTCCAGAAGCATTTTTTGTCATGAATGCTGACGTGTGCTCAGAGTTTCCTCTTCCAGAGATGCTGGACTTCCAGAAGGAGCATGGAGACGCTTACAGCTTTGTCATCCTTGGTACCACGGCTAACAGAAAACAGTCCCTGAACTACGGCTGCATTGTTGAGAATGAACAAACTGATGAGGTCTTGCATTATGTCGAAAAGCCCAGCACCTTCGTGAGTGACATAATCAACTGTGGGATATACCTGTTCACTCCGGAGATATTCCAGCACATTGGAGAGGTTTTCCAGAAGAACCAACAGGACATGCTCTTAGAGGAGCAGTCCAACGGCTGGCACCGGGCAGAGGTGATCCGTCTGGAGCAGGACATCTTTACGGCGCTGGCAGGCCAAGGCAAATTATATGTGTACAAAACAGACCTCTTCTGGAGCCAAATCAAATCTGCAGGATCTGCGATCTATGCGAGCCGTTTGTATCTTAGCCAGTATCACACAACACATCCAGAGAGGTTAGCTACTAATAGAGAAGGAGGGCCAAAGACCAGAGgacATGTTTATATACATCCAACTGCCAATATAGATCCAACTGCTGTGttaggTCCAAATGTGTCCATAGGAACAGGCGTAACGATCGGTGCAGGAGTTCGCGTAAGGGAGTCCATCATCCTCCACGGTGCTACTTTACAGGATCACAGCTGTGTGTTGAACAGTATTGTGGGTTGGGGCAGCACCATTGGCAAATGGTCCAGAGTAGAAGGGACCCCTAGTGACCCGAATCCTAATGACCCATATGCCAAAATTGACAGCGAGACACTGTTCAGAGATGGAAAACTAACACCGTCCATTACAATTCTAgGCTGTAATGTAAATATCCCATCGGAGGTCATCATACTCAACTCCATCGTCCTGCCACATAAAGACCTCAACAGAAGCTTCAAAAACCAGATCATATTATAGGTTCAATCATTTGTACCTGTCagtcttatttaaataaaacaggtATTTGAAAATGATGGATGAATCATCTGAAGATTCAGTGGCATTTGTGTTGATGTCTGCTACTGTAATTTGCATTTACCATTGTACAGTGTTACAGTGTAGAATGTCTTTGTCAAACTGTTTCTGAAATGacttgaaattaattttatttacagcttGTTGGCTCCCTCTTGCCAGTGAAACGTCAAAGATATTCAAAAAAAGCTGCTGTTTATTTGTGCAGTCTGTTACTATTTGTTCTTACAGCATTTAACTTgccatgaaaaaaacaaaaatgaagacaaatgGTAAAATCTTGTAATTGGATACAAGTTGTGTtggtaattgttttaaataattgatgtTTCTGTGACTGCTCGCTGTATGAAAGCTGAGTGCAGTGCAAGAGTCAGACGTctgcaataaattatattttgattaagtCACAAAAGGTAATAAAGTAATTTACTGCTGCCCTTGTAGAAAA

Function

symbol description
gmppaa Predicted to enable GTP binding activity and mannose-1-phosphate guanylyltransferase activity. Predicted to be involved in GDP-mannose biosynthetic process. Predicted to act upstream of or within biosynthetic process. Orthologous to human GMPPA (GDP-mannose pyrophosphorylase A).

NR:

description
mannose-1-phosphate guanyltransferase alpha isoform X1

GO:

id name namespace
GO:0009298 GDP-mannose biosynthetic process biological_process
GO:0004475 mannose-1-phosphate guanylyltransferase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K00966 GMPP; mannose-1-phosphate guanylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249576.1 True 2060 mRNA 0.42 13 9150192 9155280
XM_043249577.1 False 2045 mRNA 0.42 12 9150192 9155280

Neighbor

gene id symbol gene type direction distance location
asic4a asic4a,LOC107672268,LOC107560474,LOC107663852,LOC107749871,LOC107571863,LOC106586149 coding downstream 101390 8978518 ~ 9048802 (-)
wnt6b wnt6b,wnt6,LOC107562106,LOC107663826,LOC107560470,LOC107672249 coding downstream 188818 8942859 ~ 8961374 (-)
wnt10a wnt10a,LOC107663825,LOC107672309,LOC107562105,LOC107560469 coding downstream 215861 8919863 ~ 8934331 (-)
cdk5r2b LOC107562111,LOC107749900,LOC107672300,LOC107560468,LOC107752915,LOC107663905 coding downstream 271104 8876681 ~ 8879088 (-)
si:dkey-69o16.5 si:dkey-69o16.5,LOC107663837,LOC107749873,LOC108411906,LOC100708275 coding downstream 323143 8824663 ~ 8827049 (-)
dars1 dars,LOC107676220,LOC107663896,LOC102778528,LOC107706104 coding upstream 5029 9160309 ~ 9184553 (-)
cxcr4b cxcr4b,LOC107749897,LOC107663919,LOC107706106,LOC107676218,LOC107568342,LOC107556439 coding upstream 31297 9186577 ~ 9188474 (-)
nxph2a nxph2a,LOC107751612,LOC107663841,LOC107556444,LOC107720323,LOC107658205,LOC107558041 coding upstream 455739 9611019 ~ 9626167 (-)
ttf2 ttf2,LOC107707769,LOC107663926,LOC107732352,LOC107658229,LOC105900813 coding upstream 503123 9658403 ~ 9669522 (-)
igsf3 igsf3,LOC107707768,LOC107663867,LOC107732353,LOC107658230,LOC108266369,LOC107565045 coding upstream 521974 9677254 ~ 9803592 (-)
G68857 NA non-coding downstream 230446 8918541 ~ 8919746 (-)
G68844 NA non-coding downstream 325805 8822356 ~ 8824387 (-)
G68839 NA non-coding downstream 332574 8816520 ~ 8817618 (-)
G68830 NA non-coding downstream 344787 8802385 ~ 8805405 (-)
G68826 NA non-coding downstream 348443 8793861 ~ 8801749 (-)
G68948 NA non-coding upstream 82837 9238117 ~ 9238462 (-)
G68981 NA non-coding upstream 452024 9607304 ~ 9610739 (-)
G68987 ugt1a4,LOC107556441,LOC107663842,LOC107663839,LOC107558044,LOC107658227,LOC107720327,LOC107558046 non-coding upstream 476753 9632033 ~ 9652602 (-)
G68988 NA non-coding upstream 498836 9654116 ~ 9654567 (-)
G68994 NA non-coding upstream 517292 9672572 ~ 9672901 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 1055345 8076468 ~ 8094847 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other downstream 1125520 8014449 ~ 8024672 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 1996238 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 2889123 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 3050280 6099071 ~ 6099912 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 752908 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 1278227 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 1359992 10515272 ~ 10519457 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other upstream 1524878 10680158 ~ 10686627 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 2241386 11396666 ~ 11493120 (-)

Expression


Co-expression Network