cacnb4a (cacnb4,cacnb4a,LOC107660636,LOC107741900,LOC108434427)


Basic Information

Item Value
gene id cacnb4a
gene name cacnb4,cacnb4a,LOC107660636,LOC107741900,LOC108434427
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18518212 ~ 18537051 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249580.1
TTGAGGAAGGCTCTGTTTTCCTGCTCTGTTTGTGGAAGCTTGATAAAATGCCAGGTCTTTGCAGCCTCTGGGGAGAGCCCCACTTCTCTATGATGTGATCGATCACACTTCATCCTCATTAATACAATACGCTGGCTTCAGGAACGGAAGGGCGATTGCCTTCTGCTTGACATTCGTCCTTCGGTGGTCTTATTGTGGGCAAGGGGATCGTAAGAGAGCCCTGTTAGAAATACTCTCGCTGGAGCTTTCTTATCCCACATTTGTATCGTTAAGGTGATCGTTGAGGAATATCAGACCTCCATGTACGACAATTTGTACCTGCATGGATTTGAAGACTCAGAGGCGGGTTCCGCCGATTCCTACACTAGCAGACCATCCGACTCAGATGTCTCTCTGGATGAAGAGCAGGGCGGCCGGCAGGAGAAAGAACAGCAGGCCACCGTTCAGCTGGAAAGGGCAAAGGCCAAAGCTGTGGCCTTTGCCGTGAGGACAAACGTCAGCTACTGTGGTGCCCTGGATGAGGACGTTCCTGTCGCTGGCACTGCCATTTCTTTTGACGCTAAAGACTTCCTTCACATTAAGGAGAAATACAACAATGACTGGTGGATTGGGAGACTGGTGAAGGAAGGTTGCGATATCGGTTTCATCCCCAGTCCCTTAAAACTAGAAAACATTCGCTTACAGCAGGAGCAAAAAAGGGGCCGCTTCCATGGGAAGTCCAGTGGGAACTCTTCTTCCAGTCTGGGTGAAATGGTGTCAGGCACCTTCAAGCCCAACACCGGTTCTGCAGgtaaacagaaacagaaagtgGCCGAGCACATTCCTCCATACGATGTGGTCCCTTCCATGAGGCCGGTGGTCTTAGTTGGCCCATCGCTTAAAGGATATGAGGTGACAGATATGATGCAGAAAGCGCTTTTTGACTTCCTGAAACACAGGTTTGAAGGCAGgatatcaatcacaagagtAACCGCAGACATCTCTTTGGCTAAGAGATCTGTGCTGAATAACCCTAGTAAGAGAGCCATTATTGAGAGATCCAACACCAGATCCAACCTAGCGGAGGTTCAGAGTGAGATCGAGCGAATCTTTGAATTGGCCAGATCCCTTCAGCTGGTTGTGCTTGATGCCGACACGATCAACCATCCAGCCCAGCTCATCAAGACTTCTTTAGCTCCCATTATTGTCCATGTCAAAGTGTCTTCTCCCAAGGTATTGCAACGGCTGATCAAATCAAGGGGGAAGTCTCAAAGcaagcatttaaatgtacaactGGTGGCAGCAGACAAACTAGCTCAGTGTCCTCCAGAAATGTTTGATGTCATTTTGGATGAGAACCAGCTCGAGGATGCATGTGAACATCTGGCTGAGTATCTGGAGGCCTACTGGCGTGCAACTCACACGTCCCTCAGCACTCCTCTGAACCCTCTGCTGGGCCGCAACCTGGGCTCCACTGCGCTCTCACCGTACCCCACAGCCATCTCTGGACTACAGagccaaagaaataaaaacagcaaccaCATCAGTGACAACTCTCCAATGGAGCGCCGCAGCTTGATGACGTCCGACGAGAACTACCACAACAACGAGCGGCAAAAGAAGAGTCATAACCGCCTGTCCTCCAGCTCCCAGCAAAGTCGAGACCACTACCCTCTGGTAGAGGAGGACTACCACGATCCCTATCAAGATGCGTACAAACCTCACCGCAACCGGGGGTCCCCCGGGGGCTACAGCAACGACTCACGGCACAGACTCTGAACATCCAATCCACTTCAGCCAGAGCTATGAGATAAATCTCACGTCATCGTGTAAACCCTTTCTGAAAATGCAGTGCATTGCGTTCACTCTGACCATATATGGGCCATCGTAACTAAAAGCAAAATCCAAGCACCCGGTCCGTCTATGTAAGGCAGTTGTTTGCAGCCCTTGCGCATCTCTTGTCAGGCAGAtggaggtgctgattttatCTGCAACGGTTGAGATAAGATGCTCTTCTGGGGAGTGACAACTATAGTACCATCTGCTCCTTCCAGTTTCTCCTAGTAGAGCCTCCTGCATTTAATTGCTAACCAAAGCCCCGCACTGTCTATATTTGCAGGACGTTTTGTGGTGGCATGCTAATTTTCACCCTGAACTAGTGCCGGCATGCAGAAATGCTCAACAGTGCCAAGACCCAATCAGCACAGAGCCTTTTTGCACGATTCCAGTAGCCAATGGAAGAGTCATGCGTTCACCGTTCTATTTCTTCCTGTCTTTAGTATTTATGTTAAATGGTGTCTTAATTTGCCCTAAAAGCCTCAGGTGCGAAGCAGGAATGCTTCATAGGTGCCAAAATATAAGAGGTTTCTTTTCCCACCTTCTATTTTCATAAAATCTCTACAAACAGTGTCAGCAGGCACTTTCTTTCtgagcaaaacacaaaagatagCAACATATTATCCTTTTCTATGTATACCATAATGCCTATAGTTCACTCAGCGCTTTGCCAGGGCCTACAAGAGGAATGTTGTTGCAAAAAATTACGCCAGAGGACCAGTATCAGGTagattttatctttttaaattacTCCATTACttggtagtagtagtaaataaacaaatctaatGAAATCTTATAAGATTTAGAGAttatatttcacccaaaaataataaataaataaatataaacaatataaatgcaatgaaGCCTGTTTTAGGACCATTAAGACTCAAgttgtgacattattttcatttaaaaaattaagcaatGTTCCTCTATCTTAatttctgcaataaaaaaagtagatttttttgtttgtttacactgTAAAGAATTATGCATCATTGTAATATTCGTTCAGTatcaataattacattaaatagtgTTATTTGgaataatgtgttaaaaaacgctataaattatttagaattaaaataggATTTAAAGGGTAAATTGTGCTTAATTATGATTaacataatattgtaataaaaaaaaaatccaaatcaattatattttctttatgctctctatatatatatacatatgtgtgtgagtgtttgtgtattttatttatttacagatttatagatttttgtgtttgtgtgtgtgtgtgtgtccctgagCATGTTTTATGAGATTCTCAGGGGTTTTGCTGAGCTCATATGACACTCTGATTGAAATGGCACAGTAGCCTGTGTCGTTGAAATACATGGCAGCTGAGTGGAAATCCATTCTGTAAATGAGGGAGTGTTTACGCGATACAATTTTCAGCGTTTTGAGTAATCTGTCGTGTAAACATACCCTCAGACAGATCTGTGGATTACCATAAAGTTCCTCTATTCTAGTAAGCTCTAGTAAGTCATTGATTATTATGACTGCTACCAGTCTTGAACTATTTAGTGTATTTAGCCTGACCTATAGTATGGTTACTGGTTGCCATAGCAACAGACTATGATACaacattaaaactataaaaggaaatgcattttttattgtttgttttacgTGAAAGTTTTAcctgtgattattttttttctttttttttttttttttgttatttgcaaaagctgttcacacacacacacacactgaagtgcTCAGATGAACAAATCAGGTGTCATCCCTGCCTTTGCTTGTGCAAAACTACTTGGTTGTGCTGCTGGCTTACATGAtcatgacacaaaaaaaaattatttttttctattgcatTAGACCTCCAATTCCATGGTCAGTTACTCaatgaaaaatgctaaatgatgTTTGATGAACAGTCCAGACAATGCTTGAATTGGTGTTGGCacagttatttaaatgttgtctGGATTTTGATGTTTGCATTTTTCTCGACTGATTTCTTGGTACTTAACAGTTCCGCAATCCGATTACCTTAATTGTGTTGTGCTGTACAGTGTTTCCTCTCACAGAGATTGCTGTTGTGTGTTCGTAATGCTCAGAGAAAGAACAAAAgcagtgttgattcagttttATAGTTACTGTGTTGCAAAAAGCATTTGGTCCTATCCTTCAGTGGCTTCATATAGTGGAGTTTTAATCATATCTGAGTGTTAATACTAAATGTTTGGTGTGGAAACGATTGGATTCATCCGGTTTCCGGTCTGCTGTAAGTTCTACCTGTGAGCAGTTCTGATGAGGTAGCTTTGATAGTAATAAACTACTGGATTTGCCGCGTGCAGAACTAGTAGAAAAGAAACTGTCTGTCCGTAGGCCATTTTCAGTATATATGGTACGTAGCATTAGAATGCAACGTTTCTGAAACGTTTCTTGCTGCAGTTGAGGGGCCAGTAGAAGTTAATGTAGTTTGGGTAAAGTGTCCTTATTCTCTGATCACTGCCACCCCCCATTTCTCTTGCCCACTCTTTTTTCTGTGTGCAATATTTCATGAACTATAGACTACTATTAATATACTATTCACATGTCTTGTTTAAACCAGTAAAATTCCCTGAATCATATAGAATGCGAGGGTTGATGTTACAAATGCATAAAGAGCTCACTGGGAACCAGCTGATAGTATCggtcatattatattattaattctatTAGATCATATGCCTAAAACAAAACTTTCCTTATTTTTAGAAGTTAATCTAAGCATTATTTAGTCACCTTACATTTTTGTTGAGCCTGGAACAATGTTGCGATTAGCCAATCGGATTTGAAGaaacagtttatagtttttgtggcTCACAATCAGTATCATATATACAGATTACTTTTCCCCCTACATGTACATACCTTTATTTGGAAAGAGTTACACATTTTGGTGTGTGATCCACAGTCTTAAAGTGCCctaattatggatttttgaggatgacctttcatgcagtgcgTAACACAGCTGAATGAAAAcgtcctgcaaagttttcaGTCTGAAAgcgcaccgtgtataaagttattgtcgcTCAAAAGAGAGATGCTACCCTGAATTGAAaccagtctttttttaaaaggagtcccaagccgtttcatgttgccCGCCCATATTttcgcgttggtctgaatgaaaagcgcaaattcattctttacaACTAGGTGTCGCTCTTgaagcgttaaaagctcacaaacacagctttaatTGAAATCGACTAATCACTGGAGGCGTTTTAAAAAAGAATCGTTTaacgttgaacaaataaggtaaaaaataaatacataatataagaAAGTTTCATGCATGTCAATCTGTTGTTTGAgagtcctaaaaccaaaatatgaacctttcataacccataataggggcactttaaggtGCTTTGGTCATTTTGGAGTCAGTATTGTAGCCAACACTCAGGACCACCATTGCTGTtactattagtattattattaattgcagTTTCGGTCAATACATTCCCAGCCAGTAACTCTGTGCCTTAACTTCATAATAAGGTacgtttgattttttttccccacaactTTTGCAAAAGGAATGTTTctttggatttatttaaaagcattttgatcCTATATGAAGTTTCAAATGTCATTCTGTCTGTGGTAAATTGTCAAcagaattcattcattttgtaaaaaacaatGTTCTTCCTATATATCCACCATCCcgataaaaacaaaattacctTCCTTCCTGAGagcaacagattttttttcctcaagtcAGAATTCTGTTTAATGCAATGGCATGTTGGTAAAAGGCAATGAGAAATTAATCCAAAAGAAGTGATATCCATTTACTATGCAAATGTGTACAGTGCTGCATGCTAATGCTTTACCTGCCTCTGCAACCTAATGGCTTCAAATGGAGTTCAAATTGAATTGTGGGTATTACTTGTGCAGGACGGTATTTGATAGAAATACAAAACTGCATGCATAATAATCCATTTGCATCGTCAGAATAAAGAGACGCTATATGTTTTGGGGGAAATAGATGTGTACAACGAAGTaagttttcttttgtaaaataaatttgaatgtaaaaaga

Function

symbol description
cacnb4a Predicted to enable high voltage-gated calcium channel activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Predicted to be part of voltage-gated calcium channel complex. Is expressed in several structures, including cardiovascular system; nervous system; pleuroperitoneal region; presumptive neural retina; and spinal cord neural tube. Human ortholog(s) of this gene implicated in dilated cardiomyopathy; episodic ataxia; episodic ataxia type 5; and idiopathic generalized epilepsy 9. Orthologous to human CACNB4 (calcium voltage-gated channel auxiliary subunit beta 4).
cacnb4 Contributes to high voltage-gated calcium channel activity. Involved in regulation of voltage-gated calcium channel activity. Located in plasma membrane and synapse. Part of voltage-gated calcium channel complex. Implicated in dilated cardiomyopathy; episodic ataxia; episodic ataxia type 5; and idiopathic generalized epilepsy 9.

NR:

description
PREDICTED: voltage-dependent L-type calcium channel subunit beta-4 isoform X1

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04865 CACNB4; voltage-dependent calcium channel beta-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249580.1 True 5935 mRNA 0.40 13 18518212 18537051

Neighbor

gene id symbol gene type direction distance location
stam2 stam2,LOC107661142,LOC107596068,LOC107555917,LOC107714296,LOC107660637,LOC107741902 coding upstream 8186 18500302 ~ 18510026 (+)
sec22a sec22a,LOC107722877,LOC107555913,LOC107660641,LOC107596098,LOC107661143,LOC107714480 coding upstream 93144 18416183 ~ 18425068 (+)
pdia5 pdia5,LOC107661141,LOC107596065,LOC107660642,LOC107555900 coding upstream 105571 18368743 ~ 18412641 (+)
slc49a4 dirc2,LOC107597477,LOC107596062 coding upstream 277494 18205648 ~ 18240718 (+)
slc15a2 slc15a2,LOC107722867,LOC107660645,LOC107597582 coding upstream 321909 18185732 ~ 18196303 (+)
nifk nifk,LOC107741903,LOC107660635,LOC107555919,LOC107714465,LOC107580417 coding downstream 9185 18546236 ~ 18549389 (+)
LOC122352186 NA coding downstream 10109 18547160 ~ 18547282 (+)
LOC122352188 NA coding downstream 11430 18548481 ~ 18548607 (+)
ddx18 ddx18,LOC107673737,LOC107741906,LOC107660632,LOC107596072,LOC107714379 coding downstream 83835 18620886 ~ 18626414 (+)
LOC122351849 bcs1l,LOC107741911,LOC107555925,LOC107673730,LOC107714219 coding downstream 112161 18649212 ~ 18652922 (+)
G71221 NA non-coding upstream 487664 18028361 ~ 18030548 (+)
G71167 NA non-coding upstream 875774 17641910 ~ 17642438 (+)
G71162 NA non-coding upstream 910382 17607512 ~ 17607830 (+)
G71133 NA non-coding upstream 1177295 17340700 ~ 17340917 (+)
G71132 NA non-coding upstream 1177643 17340342 ~ 17340569 (+)
G71331 NA non-coding downstream 1429 18538480 ~ 18538700 (+)
G71333 NA non-coding downstream 3832 18540883 ~ 18541336 (+)
G71334 NA non-coding downstream 6723 18543774 ~ 18543998 (+)
G71442 LOC103022703,LOC103363874,LOC107673729,LOC107721018,LOC107596080,LOC107660614,LOC107555938 non-coding downstream 210860 18747911 ~ 18892052 (+)
LOC122351431 NA non-coding downstream 352872 18889923 ~ 18893969 (+)
lrp1bb lrp1b,LOC107661145,LOC107660661,LOC107746259,LOC107714450 other upstream 553968 17736006 ~ 17964244 (+)
G71130 NA other upstream 1178590 17339127 ~ 17339622 (+)
jam2b LOC107748130,LOC107673722,LOC107695483,LOC107595821,LOC107597562 other upstream 1309992 17203797 ~ 17208220 (+)
si:ch211-218d20.15 LOC107748193,LOC107695487,LOC107756736,LOC107673701,LOC107597587 other upstream 1598922 16916761 ~ 16919290 (+)
mpc2b mpc2,LOC107695492,LOC107673680 other upstream 1768511 16745893 ~ 16749701 (+)
clasp1a clasp1a,LOC107741904,LOC107555920,LOC107660633,LOC107673735,LOC107714287 other downstream 12885 18549936 ~ 18610928 (+)
tfcp2l1 tfcp2l1,LOC107673739,LOC107714264,LOC107596086 other downstream 74944 18611995 ~ 18619387 (+)
plcd4b plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071 other downstream 98055 18635106 ~ 18642486 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other downstream 145621 18682672 ~ 18689542 (+)
cps1 cps1,LOC107660611,LOC107741925 other downstream 359551 18896602 ~ 18931462 (+)

Expression


Co-expression Network