abcb6b (abcb6b,abcb6a,abcb6,LOC107688753,LOC107596549,LOC107716755)


Basic Information

Item Value
gene id abcb6b
gene name abcb6b,abcb6a,abcb6,LOC107688753,LOC107596549,LOC107716755
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7855221 ~ 7881034 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249592.1
tttaaaaaactaCTAGCGAGCGACATTTGCTGCACGAGCACGTCTTTCCCCTAACagagaaaacagcattttcGGTGTTTAAAAGCGTCAGCGTTTTCATTTAACATCCGAGCCACATGACCACAAGTCTATCAGTCATGTGAATCCTGCCCATAAGACACGCAGACAGCGTTTCCCGTTCAGCTCGATACGGTCGGTATAATCGTTAGAAATCCGTGCCCGCGctaatatgcactttttttaaacccttGCTAATTGATAGACTGCAATACACTTCAATGGAGAAAAGCGTTCAGAGTGTATTTAGATTGTACAATGGCACAGAAGTACTCTAAAAGACACACGAAACAACCAAAGGCACTGGCAAATGAAACCGAGCGAGCATCACTTGCACTGACTGTAGAGAAGCGAGGTCAAGTGGAGCTGGTCTCTGGCTCAGCATGGCAGGGCTTCAGGAGGAAAGTGTGTCTGCTGGTGCCCTACATGTGGCCCAGGGGAAGTGTGGGGCTGCAGGCTCTGGTCATCCTGTGTGTCGGGCTGCTGGGACTCGAGCGGCTCATCAATGTGTTTGTACCCATTTACAGCAGGAATATAGTGAACCAGCTGTCGGTGACGGAGAGCTGGAGTACCCTGGCCTTCACGGTCTGTGTTTACGTCCTCCTTAAGTTCTTGCAGGGCGGAGGGGTAGGGACATCAGGGTTCGTCAGTAACTTGCGCAGCTTCCTGTGGACTTATGTCCAGCAGCACACCAGCCGTGTAGTGCAGGTCCGTCTTTTCGCTCACTTGCATGACCTCTCTCTCCGCTGGCATCTGGGCCGACGCACCGGAGATGTCCTGCGCAGCATTGACCGTGGAACCTCCTCAGTCAACAACTTGTTAAGCTATATTGTGTTCAGCATTGTACCCACTATTGCTGACGTCGTCATTGCCATCATCTATTTTGTGACGTACTTCAGTGCCTGGTTCGGcctcattgttttcatttgcatgtttcTCTACCTCGCCATCACCATCATTATCACTGAATGGAGGACCAAGTACAGGCGGGAAATGAACACACAGGACAACATTGCCAAGTCAAAAGCAGTAGACTCGCTTCTCAACTTTGAAACCGTAAAGTACTACAATTCAGAGAGTTTTGAAGTCAGGCGCTTTGAGGATGCCATCCTGAAATATCAGGCATGTGAATGGAAGACCAATGCCTCCCTGGCTCTCCTGAACCAAACTCAGAACCTGATCATTGGGTTGGGCCTGTTGGCTGGATCCCTGCTTTGTGCATACTATGTTACAGTGGACAAGTTTAAAGTCGGTGACTACGTTCTTTTTGGAACCTACATTATTCAGCTCTACACTCCACTCAACTGGTTTGGTACATATTATAGAATGATCCAAAGTGCGTTTGTTGACATGGAGAGCATGTTGGATCTGCTAACCGAGGAAAAAGAGGTAAAGGACGATGTGAATGCAGGAGACCTGTTGTTCACAAAAGGAAGGGTTGATTTCCAGAACGTGTGCTTTAGTTACACTGCTGGGAAAGAAATTCTCAGTCAAGTCTCATTCACAGTGATGCCTGGTCAGACAGTTGCActgGTCGGTCCGTCCGGATCAGGAAAAAGCACCATCATCCGTTTGCTTTTCCGCTTTTATGACGTACAGGGTGGCTGCATCCTCATCGATGGTCAGGACATCTCTAAGgTGAAACAGACCTCTCTTCGATCCTACATTGGTGTAGTTCCTCAGGACACCGTTCTTTTCAATGATAACATCCGTGAAAACATCCGCTATGGACGCATATCTGCAAGTGACCAAGAAGTAGAAGAAGCTGCAGAGGCTGCTGATATCCACCAGAAGATATTATCCTTTCCAAACGGATATGATACTGAGGTGGGCGAAAGGGGTCTGAAGTTGAGCGGAGGGGAGAAACAGAGAGTGGCCATCGCTCGCACAATCCTAAAATCTCCTCGCGTTATTTTGCTCGACGAAGCTACGTCTGCTTTGGACAGTCAAACGGAGCGTAATATTCAGGCTTCTCTCGCTAAGGTGTGTGCCAATCACACCACTCTGGTCGTGGCACACAGGTTATCCACCATCATCAACGCCAATCAAATTCTGGTTCTTCATGATGGGCAGATTGCAGAACAAGGAAGGCACGAGGAGCTGCTGGCCATGGGTGGACTGTACGCAGCCATGTGGTTAAAACAGCAGCAAACCCAAGAGTCAGAGGTCTCTATAGATGAAGAACCGCAGGAGCCACAGCAGAGTGGCTGAAGCTGATGGAGCGGCGATGATGAATGGTGATGGGTCAAATCAATCAGGAAAATGGTAAAAGAGCCCACTGAGCTCCAGAGTTCATCTCAGACACAGGGGCACCAGACTGCACCAAAGTAATAAAGTAAGAAGAGTGTTTCTCAGGGAAAGGTGTCATTAAAAATCTACCAATCATTGAGTACCTCTAAatatgttaaagggatagttcaccataaaatgaaaattttccTCATTTGCTCATTActgtcatgttgttccaaacttgtatgactttttttctgtgcaaaatGAAAGCAgatactgtgtttttaatttgagtgTTAGCGGTGGTTCCCATTGACATGCACACTTGTCCCACATGTCCCACAAAGAAAGTCATAGAGGCGTGACAGCATTTCGCtttttggtgatttttttttttttttttttgaaatgcttAGGAAAtagcattaatgtaaaaatactgtgaTGTGATGACTACATTCAGTCATTTGttacattgttttttctttatattacataaacatacaaCGCTTTGTTTATACTTCTATCACTGTAAACTGAGGAGATGTGGAGGTATCTCTATCATCTACAGATGGACAGATACTAGGTAACATGAACACAAACATTTAAGTCACCTTTATGTATTGCTTTGTTCATGTTACTCTGTATTTAAAGAAGCACATAGTAAATCCTATGAACTACATGTA
>XM_043249593.1
tttaaaaaactaCTAGCGAGCGACATTTGCTGCACGAGCACGTCTTTCCCCTAACagagaaaacagcattttcGGTGTTTAAAAGCGTCAGCGTTTTCATTTAACATCCGAGCCACATGACCACAAGTCTATCAGTCATGTGAATCCTGCCCATAAGACACGCAGACAGCGTTTCCCGTTCAGCTCGATACGGTCGGTATAATCGTTAGAAATCCGTGCCCGCGctaatatgcactttttttaaacccttGCTAATTGATAGACTGCAATACACTTCAATGGAGAAAAGCGTTCAGAGTGTATTTAGATTGTACAATGGCACAGAAGTACTCTAAAAGACACACGAAACAACCAAAGGCACTGGCAAATGAAACCGAGCGAGCATCACTTGCACTGACTGTAGAGCGAGGTCAAGTGGAGCTGGTCTCTGGCTCAGCATGGCAGGGCTTCAGGAGGAAAGTGTGTCTGCTGGTGCCCTACATGTGGCCCAGGGGAAGTGTGGGGCTGCAGGCTCTGGTCATCCTGTGTGTCGGGCTGCTGGGACTCGAGCGGCTCATCAATGTGTTTGTACCCATTTACAGCAGGAATATAGTGAACCAGCTGTCGGTGACGGAGAGCTGGAGTACCCTGGCCTTCACGGTCTGTGTTTACGTCCTCCTTAAGTTCTTGCAGGGCGGAGGGGTAGGGACATCAGGGTTCGTCAGTAACTTGCGCAGCTTCCTGTGGACTTATGTCCAGCAGCACACCAGCCGTGTAGTGCAGGTCCGTCTTTTCGCTCACTTGCATGACCTCTCTCTCCGCTGGCATCTGGGCCGACGCACCGGAGATGTCCTGCGCAGCATTGACCGTGGAACCTCCTCAGTCAACAACTTGTTAAGCTATATTGTGTTCAGCATTGTACCCACTATTGCTGACGTCGTCATTGCCATCATCTATTTTGTGACGTACTTCAGTGCCTGGTTCGGcctcattgttttcatttgcatgtttcTCTACCTCGCCATCACCATCATTATCACTGAATGGAGGACCAAGTACAGGCGGGAAATGAACACACAGGACAACATTGCCAAGTCAAAAGCAGTAGACTCGCTTCTCAACTTTGAAACCGTAAAGTACTACAATTCAGAGAGTTTTGAAGTCAGGCGCTTTGAGGATGCCATCCTGAAATATCAGGCATGTGAATGGAAGACCAATGCCTCCCTGGCTCTCCTGAACCAAACTCAGAACCTGATCATTGGGTTGGGCCTGTTGGCTGGATCCCTGCTTTGTGCATACTATGTTACAGTGGACAAGTTTAAAGTCGGTGACTACGTTCTTTTTGGAACCTACATTATTCAGCTCTACACTCCACTCAACTGGTTTGGTACATATTATAGAATGATCCAAAGTGCGTTTGTTGACATGGAGAGCATGTTGGATCTGCTAACCGAGGAAAAAGAGGTAAAGGACGATGTGAATGCAGGAGACCTGTTGTTCACAAAAGGAAGGGTTGATTTCCAGAACGTGTGCTTTAGTTACACTGCTGGGAAAGAAATTCTCAGTCAAGTCTCATTCACAGTGATGCCTGGTCAGACAGTTGCActgGTCGGTCCGTCCGGATCAGGAAAAAGCACCATCATCCGTTTGCTTTTCCGCTTTTATGACGTACAGGGTGGCTGCATCCTCATCGATGGTCAGGACATCTCTAAGgTGAAACAGACCTCTCTTCGATCCTACATTGGTGTAGTTCCTCAGGACACCGTTCTTTTCAATGATAACATCCGTGAAAACATCCGCTATGGACGCATATCTGCAAGTGACCAAGAAGTAGAAGAAGCTGCAGAGGCTGCTGATATCCACCAGAAGATATTATCCTTTCCAAACGGATATGATACTGAGGTGGGCGAAAGGGGTCTGAAGTTGAGCGGAGGGGAGAAACAGAGAGTGGCCATCGCTCGCACAATCCTAAAATCTCCTCGCGTTATTTTGCTCGACGAAGCTACGTCTGCTTTGGACAGTCAAACGGAGCGTAATATTCAGGCTTCTCTCGCTAAGGTGTGTGCCAATCACACCACTCTGGTCGTGGCACACAGGTTATCCACCATCATCAACGCCAATCAAATTCTGGTTCTTCATGATGGGCAGATTGCAGAACAAGGAAGGCACGAGGAGCTGCTGGCCATGGGTGGACTGTACGCAGCCATGTGGTTAAAACAGCAGCAAACCCAAGAGTCAGAGGTCTCTATAGATGAAGAACCGCAGGAGCCACAGCAGAGTGGCTGAAGCTGATGGAGCGGCGATGATGAATGGTGATGGGTCAAATCAATCAGGAAAATGGTAAAAGAGCCCACTGAGCTCCAGAGTTCATCTCAGACACAGGGGCACCAGACTGCACCAAAGTAATAAAGTAAGAAGAGTGTTTCTCAGGGAAAGGTGTCATTAAAAATCTACCAATCATTGAGTACCTCTAAatatgttaaagggatagttcaccataaaatgaaaattttccTCATTTGCTCATTActgtcatgttgttccaaacttgtatgactttttttctgtgcaaaatGAAAGCAgatactgtgtttttaatttgagtgTTAGCGGTGGTTCCCATTGACATGCACACTTGTCCCACATGTCCCACAAAGAAAGTCATAGAGGCGTGACAGCATTTCGCtttttggtgatttttttttttttttttttgaaatgcttAGGAAAtagcattaatgtaaaaatactgtgaTGTGATGACTACATTCAGTCATTTGttacattgttttttctttatattacataaacatacaaCGCTTTGTTTATACTTCTATCACTGTAAACTGAGGAGATGTGGAGGTATCTCTATCATCTACAGATGGACAGATACTAGGTAACATGAACACAAACATTTAAGTCACCTTTATGTATTGCTTTGTTCATGTTACTCTGTATTTAAAGAAGCACATAGTAAATCCTATGAACTACATGTA

Function

symbol description
abcb6a Predicted to enable ABC-type heme transporter activity and heme binding activity. Acts upstream of or within iris morphogenesis and melanocyte proliferation. Predicted to be located in membrane. Predicted to be active in vacuolar membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in dyschromatosis universalis hereditaria. Orthologous to human ABCB6 (ATP binding cassette subfamily B member 6 (Langereis blood group)).
abcb6b Predicted to enable ABC-type heme transporter activity and heme binding activity. Predicted to be involved in heme transport and transmembrane transport. Predicted to be located in membrane. Predicted to be active in vacuolar membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in dyschromatosis universalis hereditaria. Orthologous to human ABCB6 (ATP binding cassette subfamily B member 6 (Langereis blood group)).
abcb6 Enables several functions, including ABC-type heme transporter activity; ATP binding activity; and heme binding activity. Involved in several processes, including cellular detoxification of cadmium ion; melanosome assembly; and porphyrin-containing compound metabolic process. Located in several cellular components, including Golgi apparatus; bounding membrane of organelle; and extracellular exosome. Is integral component of mitochondrial outer membrane. Implicated in dyschromatosis universalis hereditaria.

NR:

description
PREDICTED: ATP-binding cassette sub-family B member 6, mitochondrial

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0061072 iris morphogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05661 ABCB6; ATP-binding cassette, subfamily B (MDR/TAP), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249592.1 True 2978 mRNA 0.45 18 7855221 7881034
XM_043249593.1 False 2975 mRNA 0.45 18 7855221 7881034

Neighbor

gene id symbol gene type direction distance location
nrp2b nrp2b,LOC107688766,LOC107752901,LOC107668386,LOC107716756,LOC107596550 coding upstream 33327 7756774 ~ 7821894 (+)
pard3bb pard3bb,LOC107688750,LOC107716778,LOC107721601,LOC107668384,LOC107593023 coding upstream 126430 7473998 ~ 7728791 (+)
fn1a fn1a,LOC107716781,LOC107688749,LOC107668382,LOC107721590 coding upstream 424737 7404352 ~ 7430484 (+)
LOC122351251 LOC107716765,LOC107721581,LOC107551069,LOC107668359 coding upstream 472019 7380818 ~ 7383202 (+)
cfap65 cfap65,LOC107688747,LOC107668360,LOC107716758,LOC107735777 coding upstream 474697 7367664 ~ 7380524 (+)
ttll4 LOC107738099,LOC107688755,LOC107752897,LOC107596548,LOC107593000,LOC107668375 coding downstream 12581 7893615 ~ 7907304 (+)
prkag3b prkag3b,LOC107738101,LOC107596559,LOC107752899,LOC107668376 coding downstream 27053 7908087 ~ 7920562 (+)
fer1l6 fer1l6,LOC107752896,LOC107596537,LOC107738098 coding downstream 40644 7921678 ~ 7938502 (+)
raph1a raph1,raph1a,LOC107752894,LOC107592998,LOC107688759,LOC107668371 coding downstream 81373 7962407 ~ 8017887 (+)
fzd7a fzd7,fzd7a,LOC107751502,LOC107752890,LOC107668396 coding downstream 289132 8170166 ~ 8172963 (+)
G68446 NA non-coding upstream 943 7853481 ~ 7854278 (+)
G68435 NA non-coding upstream 518862 7335491 ~ 7336359 (+)
G68397 desma,LOC107688742,LOC107602901,LOC107716787 non-coding upstream 553726 7280767 ~ 7301495 (+)
G68424 NA non-coding upstream 591508 7262541 ~ 7263713 (+)
G68401 NA non-coding upstream 595827 7256680 ~ 7259394 (+)
G68668 NA non-coding downstream 322819 8203853 ~ 8205963 (+)
G68678 NA non-coding downstream 341553 8222587 ~ 8222817 (+)
LOC122351403 NA non-coding downstream 719690 8600724 ~ 8614984 (+)
G68808 NA non-coding downstream 945178 8826212 ~ 8827046 (+)
LOC122352063 NA non-coding downstream 978439 8859473 ~ 8860379 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 1882098 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 1969468 5883927 ~ 5885753 (+)
trnam-cau_112 NA other upstream 2397692 5457458 ~ 5457529 (+)
trnar-ccu_65 NA other upstream 2397958 5457191 ~ 5457263 (+)
trnam-cau_111 NA other upstream 2398378 5456772 ~ 5456843 (+)
si:ch211-167j6.3 NA other downstream 460261 8341295 ~ 8342751 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other downstream 550077 8431111 ~ 8433483 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other downstream 579710 8460744 ~ 8506143 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 982353 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 986063 8867097 ~ 8871633 (+)

Expression


Co-expression Network