cavin2a (sdpra,LOC107728296,LOC107670717,LOC107555844,LOC107675358,LOC107601077,LOC107718373)


Basic Information

Item Value
gene id cavin2a
gene name sdpra,LOC107728296,LOC107670717,LOC107555844,LOC107675358,LOC107601077,LOC107718373
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13094152 ~ 13106211 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249598.1
GCGGAGAAGAGAAACGCCAGCTTAGATTCGTGGAGAAATGAAGAGACATTCAGGTGCATTCacacagacactgaaacacCTCCATTCCTTCACACAAACTGTTGCTGCTGTTGTCAAAATATGTCTTCTGGGGACGCTTCATACAGATGACAAACAAACATCGAGCCCATGCAGGCTGATCAAACAATGCTGAAATTGCATTGAGGaaaatgcgcacacacacacagtggcaCACTTTCACACTGACACTCTTTACTCACATTACTCTGATGGGCTGGGCTAAATACCACGGCAACCAGGCCCCTCCCCTGGGTGTGTGAGGAGTTTTTAAGTGGAGAGTTGGGAATGTTGTTTTTAGAGAGGCGCAGAAGGCAGGAGAGTGTCTGTGAGAGTCAATCTAACCCCGTCTTTCAAAACCACCAGCGTTGACTCCAGGATGGGTGAAGACTCTTCTCACGCAGAGCGCAGCACAGCCACCTTACCCAGGGAGGAAAGCACCCCGACGCCACCGGCTCCAGATGCTCATGATGCTCAAGATGCTCAAGATCTCCTCATTCCGAGCTTCAGTCCTGGCTCGGTGCCCTCTTCCCCTGTCCACACCCTTTCCCGCTTGGGCCCCAAGTCCCCGACCAGCCCCACGGCCCCTGGCGGCCAGGTCAGCGCCATCACAGTGGTGGCTCTGCTCGACAAGCTGGTGGTGATGATCGAGTCGGTGCAGGAGAACCAGCGGAGGATGGAGAAGAAACAGGCCGAGCTGGAGGGGGCCGTGAGGATGGTGCAGGGCGACGTGACCCGTCTCACCAAGAACCACATGTCCACGGCCAACAGCGTGGCAAAGCTGCTGGAGCGCTCACGCAAGACTGGCCTCAATGTGAAGGAGGTGAGGGAGCGCCTGGATAAACAGAGCAGCCAGGTGAAGCGTCTGGAGGCCAACCACGCCCATCTGCTCAAGAGGAACCACTTTAAAGTGCTCATCTTTCAGGAGGACCACGAAATCCCATCCACTCTGCTTACTAAAGATGGCCTGGCCTCCACCTCTCAGGATGAGATCGGTCCATCTGCACCAACTCCGCTCACTGATTTAAACCGCTCTCAAGAGGAAGGCCTGCAGACCATCAGCCTCTCTTCCGATGACGACGAGGAAAAAGGAGCAACTAGTCCTCTGGCAGAAGGTGGCGATGATTCGCTAGATCTGCAAGAAGAAAGCTTCCCAGGCTTGGGAAGCGAACGTCTGGAGCGCTCTCGAGCTGACAAGTTCAAGCGCTCCAGTCTGAAGAAGGTGGATAGTCTAAAAAAGGCCTTCTCACGAAGCAGCATCGAGAAGAAGATCAACAAAATCGTGCCTCCAGAACAGCGAGAGAAGATCAAGAAAAGCTTCATCCCCAACCACCCGAAGAGCTCCTCTTCCAAGAGCTCGTCCTTCCGTGTCTCTCCAATGACCTTCAACGTCAAGAAGGTACGGGATGGAGATGCTGACTCCTCCCAGCAGCCTGGGAGCTCACCGAGGAACCTCAGCCCAGTGGAAGTTCCCAACATTGAGGGTCCCGACGGAGAGCTGCCCCTGGCTGAGTTACACTCCTCAGCTGAGAAAGCCAATGGAGACGGTCTACGCAGCCCCTCCACCCCGGGCAGCGGGGATGGAGAGGTGTTTGTCACAGTTGAGGGTGGAGATCTTGAGAACGGTCCGACCGCAACTCTGGCTGAAGAAGAGGTGGATAAAGAAGATGATGACACTGATGGCAATGATGAAAATGgaaaggaggaagaggaggaggagaaagaagtGAGACCTAAAGAAGAAGCGTCTGTGTCTCCGCCGTCGACTGCAGCTACTGTTGAGCTACCTTCTTAGATATGGTTGTGTTTCTGACTTCGAATCACTTCTGAGACTTTGGGAAGAGTAGTTACTGCCTTGTTCCACTGGTATTTGTTCCCAAGCTTGTTTAATGTTAGCATGTCTGCTAAAATAACATATTGCCCTGAATTAACCCCTAATATAATGTAACTATAGCCTATTGAGTTATATTCAGAAATTTAGCACGTTCTTGTAGAAGaaaattccatttaaattcCATTTCAAATAGATTCTGTATAAAAGCCCTGAGAATGGTACAGCAGTTCAGACCACTGTCACcacaatgacacaattttcCTGCGGTAGCCTGTGAATACCATGAAATTGACTGAACTGAATCGCCTGAACTCTCACTCtctatcttttttctttgtgcGTAGGAGAAGCAATGTGTACAAATCTGAACCTTTGTTATGCTGCAGTCCAGACTCTCTTCTGTCGATGTACATGAAATGTAGTAttaaactgcatgcaaaaaagTACTGTGGTAGTAATATGGTTTTTGGAAACAGtgctttgtttttcacacaGTACTTTGACGCAAATAGCATGTGGAAACCATTGTATATTAATACGAATTCGTGAAAATATAGTAACAATATGGAACATCATTACTGTACCATTGTACCACCACAGTACTTTTTGTATGGCATGAAACAGATAACTACAAAAGACAAGAGGTGTTGAAagttatgtctttattttttgacaattttagaacttttattaaaatatttagcagca

Function

NR:

description
PREDICTED: serum deprivation-response protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249598.1 True 2599 mRNA 0.49 2 13094152 13106211

Neighbor

gene id symbol gene type direction distance location
tmeff2a tmeff2a,tmeff2,LOC107728299,LOC107670719,LOC107675359 coding upstream 3810 13035893 ~ 13090342 (+)
LOC122351846 ankrd44,LOC107719801,LOC107659898,LOC107595853 coding upstream 282677 12789290 ~ 12811475 (+)
LOC122351844 sf3b1,LOC107731751,LOC107659892,LOC107719800,LOC107690614,LOC107595847,LOC107569635 coding upstream 306715 12777570 ~ 12787437 (+)
LOC122352187 NA coding upstream 363190 12730836 ~ 12730962 (+)
dnah7 dnah7 coding upstream 474730 12562459 ~ 12619422 (+)
trnas-cga_5 NA coding downstream 2204 13108415 ~ 13108496 (+)
nabp1a nabp1a,nabp1,LOC107728291,LOC107670711,LOC107718374,LOC107555843 coding downstream 3006 13109217 ~ 13112949 (+)
c9h2orf69 zgc:153521,LOC107718378,LOC107675339,LOC107601069,LOC107555833 coding downstream 12068 13118279 ~ 13121043 (+)
tyw5 tyw5,LOC107725219,LOC107728297 coding downstream 70402 13176613 ~ 13179387 (+)
LOC122351306 LOC107695589,LOC107555072,LOC107725238,LOC107601065,LOC107571720,LOC107739951,LOC107670699,LOC107555073 coding downstream 105534 13211745 ~ 13213541 (+)
G69723 NA non-coding upstream 254001 12837719 ~ 12840151 (+)
G69718 NA non-coding upstream 320302 12773334 ~ 12773850 (+)
G69706 NA non-coding upstream 369312 12665012 ~ 12724840 (+)
G69659 LOC107709425,LOC107724026 non-coding upstream 567279 12518289 ~ 12526873 (+)
G69625 NA non-coding upstream 636654 12457264 ~ 12457498 (+)
G69783 NA non-coding downstream 69 13106280 ~ 13106757 (+)
G69789 NA non-coding downstream 1384 13107595 ~ 13107832 (+)
G69796 stk17b non-coding downstream 23887 13130098 ~ 13133839 (+)
G69985 NA non-coding downstream 409478 13515689 ~ 13518237 (+)
G70021 NA non-coding downstream 562895 13669106 ~ 13669444 (+)
G69755 NA other upstream 108174 12984868 ~ 12985978 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other upstream 290744 12732298 ~ 12803408 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other upstream 464617 12627535 ~ 12629535 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other upstream 641787 12434988 ~ 12452365 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other upstream 938348 12046499 ~ 12155804 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other downstream 183482 13289693 ~ 13304591 (+)
ccnt2a ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362 other downstream 569952 13676163 ~ 13684835 (+)
LOC122351767 NA other downstream 1480871 14587082 ~ 14589439 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other downstream 2294916 15401127 ~ 15425361 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other downstream 2601990 15708201 ~ 15715901 (+)

Expression


Co-expression Network