LOC122352095 (LOC107688783,LOC107738103,LOC107596557)


Basic Information

Item Value
gene id LOC122352095
gene name LOC107688783,LOC107738103,LOC107596557
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7955089 ~ 7957338 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249603.1
AGATGTTTccagagctcactcaagtataaAGAGACAGGGGGGATACCTCCACAGTTATTACATGACACAATGATTATCACACTTATTAGAATCTTTATATATGTCCCGCTTGGATTGGCTCTGCGCGTGTCTCAGCCTTACCGAGCGGTCGGGAAAGAGGGAGAAGTCCCTCTCCGCTGCTCCTTCACCTCAAATGTACAGCCTCAGGAAATGCAGGTGTCTCTGTACAGAGGTTTGCACGGCCGCGAGAGGATCTGCAGAGCTTACGTGAACGTCTCCGAGCCGCGCTTCACGACAGACGGCTCGGTCAACTGCAGAGGGAATATCAGCCCTGGAAGAGTAGACATGATCGTGTCTGGCCTGCGAGGGAACGACACGGACTTCTATCGCTGCGCGATCGAGATTTTCTTCCCGCCTCCCTATCTCAGGACCATCGGGAACGGCACTGTTGTTGACATGCAAGAAACTCCAAACTGTCCCACTGCATCCACCCAGAGCCAGATTCAGAGCCAGACTTCAGAACAGGAATCTGTCGAATATGATGTGGGCCCACTTCCTCTGCTGTATGCCATCCTGATCATCACCTCCTGCAGTTTAATTCTACAGATGTTTGCCTGCAAATGGAGGACCTCTGCATCCACGGCACCTATGCTTTCACAAAAAGAGCGCTATATGAAATTCTAAGGGGGGTAACATCTCCGTCTGCATGTACTCGCATGCATTTTAACCTGCATGTACTCACATGTCATTTTCTCCTGCatgtattttcatgtaattttaacCTGCATGTATTGACATGTACTAACATGAATTCTCACTTGCATGTATTCACATGTATTTACACAACACCactgtctttattttgttttattcatttttttttttacaaagaattaaacattatttacattttaa

Function

NR:

description
PREDICTED: T-cell-specific surface glycoprotein CD28-like

GO: NA

KEGG:

id description
K06470 CD28; CD28 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249603.1 True 915 mRNA 0.46 4 7955089 7957338

Neighbor

gene id symbol gene type direction distance location
si:ch211-67e16.3 NA coding downstream 2807 7948380 ~ 7952282 (-)
si:ch211-67e16.4 LOC107596547,LOC107738112,LOC107668355,LOC107688758,LOC107752914,LOC107592999 coding downstream 7284 7938052 ~ 7947805 (-)
si:ch211-67e16.11 si:ch211-67e16.11,LOC107596562,LOC105899123 coding downstream 62681 7881178 ~ 7892408 (-)
LOC122352131 si:ch73-199e17.1,LOC107668388,LOC107716782,LOC107716784,LOC102213860,LOC101168255,LOC102793273 coding downstream 605673 7347110 ~ 7349416 (-)
tuba8l3 tuba8l3,LOC107387629,LOC102223550,LOC108423972,LOC107716784 coding downstream 608803 7343107 ~ 7346286 (-)
abi2a abi2,abi2a,LOC107738105,LOC107752895,LOC107592995,LOC103029249,LOC108423993,LOC107688767 coding upstream 68891 8026229 ~ 8055168 (-)
tmem237a tmem237a,LOC107738107,LOC107668390,LOC107752911 coding upstream 99205 8056543 ~ 8063095 (-)
mpp4a mpp4a,LOC107738104,LOC107688761,LOC107752892,LOC107592993,LOC107668389 coding upstream 107315 8064653 ~ 8074446 (-)
LOC122351474 LOC107600885,LOC107659206 coding upstream 246942 8204280 ~ 8209919 (-)
carf carf,LOC107751498 coding upstream 255450 8212788 ~ 8222003 (-)
G68554 nrp2b,LOC107596550,LOC107716756,LOC107688751,LOC107593002,LOC107752901 non-coding downstream 133200 7820008 ~ 7821889 (-)
G68555 nrp2b,LOC107688766,LOC107688751,LOC107752901 non-coding downstream 136257 7815249 ~ 7818832 (-)
G68489 NA non-coding downstream 573581 7381290 ~ 7381508 (-)
G68473 NA non-coding downstream 613595 7327829 ~ 7341494 (-)
LOC122352164 NA non-coding downstream 919728 6982678 ~ 7035361 (-)
LOC122352023 NA non-coding upstream 513525 8470863 ~ 8474578 (-)
G68822 NA non-coding upstream 804433 8761771 ~ 8835225 (-)
G68826 NA non-coding upstream 836523 8793861 ~ 8801749 (-)
G68830 NA non-coding upstream 845047 8802385 ~ 8805405 (-)
G68839 NA non-coding upstream 859182 8816520 ~ 8817618 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 801135 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 1694020 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 1855177 6099071 ~ 6099912 (-)
G68124 dip2a,LOC107549743,LOC107752588,LOC107720936 other downstream 1911164 6043275 ~ 6043925 (-)
LOC122351463 LOC107689507,LOC107549921,LOC107670332,LOC107752589,LOC107549740 other downstream 2023953 5912855 ~ 5931136 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other upstream 57111 8014449 ~ 8024672 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other upstream 119130 8076468 ~ 8094847 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 1950850 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 2476169 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 2557934 10515272 ~ 10519457 (-)

Expression


Co-expression Network