agps (agps,LOC107725825,LOC107657345,LOC107671268,LOC107716908)


Basic Information

Item Value
gene id agps
gene name agps,LOC107725825,LOC107657345,LOC107671268,LOC107716908
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4576182 ~ 4610978 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249604.1
ttattattacaacgTTAGATAAGATAGCGATAAATACTTGAAAAGTGGTGTCTActaaccaaaaataaacagccTAATCTAGGGTTTATGGGAAATCCTCTGTATTTCAGTCAGTAACAGCGCGCCGGAGCGCGCGGGGAGGGAGGCGGAGCGCGGTGCATGACGGGACGCGGGTGTAATCTCCATCAGCCGCCCGCTGACCTCTGACAGCAAACACGGAAGCAGCATGGCGTCAAACGGCAGCAGCGCGCAGCAGAGGCTCCGGATCATAGCCGGACATTTGCAGAAACGGCCAGAAGACGAAAACGCGAGCGTCGCCGCGCAGGAGTGCAAAGCCGAGGCGCCCCGATCCGAGCCGAGCGGCGCGACGCCGGTACCGAGGAGGAGacaGGAGATCATGAAGTGGAATGGCTGGGGTTACAGTGACTCCAGGTTCCTCTTCAATAAAAAAGGTCAAGCAGAGTTCACAGGGAAACGGTATCGGTTGAGTGGGCTGATTTTACCAAGTCTGAAGGACTGGTTCGAGGGCACGTTTGGCGCCAATTTACAGCACAAGTCTCCTGCCACGCCCAGTCTGAATTTAAGTGCAGTCGCTCCTCCTAACCTGAACGAGCCCTTCATCGAGGATCTGAAAGCAGCGGGTCTGGCCGTGTCACATGACCCAGAGGACCGGGTTTTCCGAGCTCATGGTCACTGCCTGCATGAGATCTTTGCCCTGCGCGAGGGGAGGATAGGACGGGTGCCCGACATGGTGCTCTGGCCGAgctgtCACAATGATGTGGAGAAGATCGTGGATCTGGCCTGCAAACACAATGTCTGCTTGATACCGTACGGAGGTGGGACGAGTGTTTCCAGTGCTCTGGAGTGCCCTCGAGAGGAGACTCGCTCCATTGTCTCTTTGGACACGTCTCAgatgAACCGGATATTGTGGATCGATGAGAAGAATCTAACGGCTCACGTGGAGGCTGGAATGATCGGACAGGATCTGGAGAGACAGTTGAATGAGCGTGGTTACTGTACGGGCCACGAGCCGGACTCCATGGAGTTCAGTTCTCTGGGCGGCTGGGTGGCCACGCGGGCGTCCGGCATGAAGAAAAACATCTACGGCAACATCGAGGACCTGGTGGTGCATATAAAGATGGTGACCCCTAGAGGAGTGATTGAGAAGAGCTGTCTGGGGCCCCGCATGTCCACCGGCCCCGACATACATCACTTCATACTGGGCTCAGAGGGGACTCTGGGAGTGGTGACTGAAGTGACGCTGAAGATCCGACCCGTTCCCGAGTATCAGAAGTACGGCTCCGTCGTCTTCCCAAACTTCCAGCAGGGTGTGGCGTGCCTGAGAGAGGTGGCCAGACAGAGATGCGCTCCAGCGTCCATTCGGCTAATGGACAACGAGCAGTTTCAGTTCGGTCATGCGCTCAAGCCACAAGTGTCCTCCATATTCACGTCATTCCTGGACGGGTTGAAAAAATTCTACATCACAAAGTTCAAAGGGTTCGACCCGCACCACCTGTGTGTCGCCACGCTGTTATTCGAAGGGGATCGTGGGAAGGTTTTGCAGCACGAGAAACAGGTTTACGACATCGCAGCCAAATTCGGGGGTCTGGCAGCAGGAGAGGATAACGGTCAGAGGGGTTACATGCTGACGTTCGTCATCGCTTATCTTCGGGATTTGGGAATGGACTACTATGTGATCGGAGAGTCGTTTGAGACGTCTGTGCCTTGGGACAGGGTTTTGGACTTGTGCAGGAATGTGAAGGAGAGGATTGTGAGAGAGTGTAAGGAGAGAGGAGTACAGTTCCCTCCGCTCTCCACatgcagAGTAACACAGACGTATGATGCAGGTGcttgtgtgtatttctattttGCCTTTAATTACCGGGGTCTGAGCGATCCAGTTCACGTCTATGAACAAGTGGAGCATGCAGCCCGGGAGGAGATTCTAGCCAACGGAGGAAGTCTGTCTCACCACCATGGAGtgGGAAAACTGCGGAAGGAATGGATGAAAGAGAGCGTGTCCGGCGTAAATATATTGGGCCTCGGcatgctccagtcggtgaaggaGTACGTGGACCCTCAGAACGTTTTTGGCAGCAGAAACCTGTTGTAATTCACTAACTCGCTCTGTACTCATTCGTCTTCTAGTCATATTTGATTTAAACTCCATATTCCTGTGTTTCTTGGTGTGCGCGCGCACACGGTAATTCGATAAATCGTTCTTCTGTTTCCCATTAA

Function

symbol description
agps Predicted to enable FAD binding activity; alkylglycerone-phosphate synthase activity; and oxidoreductase activity. Predicted to be involved in ether lipid biosynthetic process. Predicted to act upstream of or within lipid biosynthetic process. Predicted to be located in peroxisome. Human ortholog(s) of this gene implicated in rhizomelic chondrodysplasia punctata and rhizomelic chondrodysplasia punctata type 3. Orthologous to human AGPS (alkylglycerone phosphate synthase).

NR:

description
alkyldihydroxyacetonephosphate synthase, peroxisomal-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008610 lipid biosynthetic process biological_process
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0008609 alkylglycerone-phosphate synthase activity molecular_function

KEGG:

id description
K00803 AGPS, agpS; alkyldihydroxyacetonephosphate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249604.1 True 2238 mRNA 0.53 20 4576182 4610978

Neighbor

gene id symbol gene type direction distance location
hnrnpa3 hnrnpa3,LOC107657386,LOC107600707 coding upstream 20433 4547501 ~ 4555749 (+)
hoxd3a hoxd3a,hoxd3,LOC107716912,LOC107600705,LOC107657387,LOC107725818,LOC107671318,LOC107588224 coding upstream 152842 4417288 ~ 4423340 (+)
hoxd9a hoxd9a,LOC107657361,LOC107588260,LOC107600753,LOC107725811 coding upstream 175110 4398723 ~ 4401072 (+)
hoxd10a hoxd10,hoxd10a,LOC107657362,LOC107671319,LOC107588261,LOC107579206 coding upstream 178604 4394716 ~ 4397578 (+)
hoxd11a hoxd11a,LOC107657363,LOC107716914,LOC107725820,LOC107671289,LOC107588263,LOC107600752 coding upstream 184171 4389648 ~ 4392011 (+)
si:ch211-222f23.6 LOC107657380,LOC107716910,LOC107571834 coding downstream 91708 4702686 ~ 4706137 (+)
osbpl6 osbpl6,LOC107670309 coding downstream 109577 4720555 ~ 4772214 (+)
cmklr2 LOC107752611,LOC107670314,LOC107560810,LOC107689523,LOC107747228,LOC107670312,LOC107561727 coding downstream 214400 4825378 ~ 4829866 (+)
LOC122351440 ino80d,LOC107747229,LOC107752578,LOC107670308,LOC107561721 coding downstream 229960 4840938 ~ 4853139 (+)
LOC122351196 sctr,LOC107549745,LOC107747236,LOC107752604,LOC107670318,LOC107560812,LOC107689516 coding downstream 381335 4992313 ~ 5006796 (+)
LOC122351246 NA non-coding upstream 657 4572574 ~ 4575525 (+)
G67680 NA non-coding upstream 171972 4351701 ~ 4404210 (+)
G67684 NA non-coding upstream 219369 4355005 ~ 4356813 (+)
G67657 NA non-coding upstream 367641 4207690 ~ 4208541 (+)
G67641 NA non-coding upstream 411110 4162356 ~ 4165072 (+)
G67752 LOC107600734,LOC107683095 non-coding downstream 66472 4677450 ~ 4685181 (+)
G67769 NA non-coding downstream 167379 4778357 ~ 4780535 (+)
G67782 NA non-coding downstream 212448 4823426 ~ 4823776 (+)
G67812 NA non-coding downstream 259207 4870185 ~ 4870882 (+)
G67826 NA non-coding downstream 288507 4899485 ~ 4954081 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other upstream 13580 4523286 ~ 4562602 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other upstream 163022 4409895 ~ 4413160 (+)
G67630 NA other upstream 354011 4141054 ~ 4222171 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other upstream 449169 4120527 ~ 4127013 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other upstream 590220 3981346 ~ 3985962 (+)
rbm45 rbm45,LOC107716918,LOC107752596 other downstream 98075 4709053 ~ 4717233 (+)
c9h2orf76 zgc:101851,cunh2orf76,LOC107670315,LOC107747242,LOC107560816,LOC107752580,LOC107549781,LOC107689495 other downstream 404492 5015470 ~ 5018338 (+)
LOC122351471 NA other downstream 414585 5025563 ~ 5028639 (+)
ndufb3 ndufb3,LOC107752587,LOC107549774,LOC107549916,LOC107689503,LOC107720946 other downstream 529167 5140145 ~ 5142152 (+)
trnar-ccu_4 NA other downstream 794251 5405229 ~ 5405301 (+)

Expression


Co-expression Network