LOC122352097 (me3,LOC107748144,LOC107595810,LOC107695468,LOC107756775,LOC108426042,LOC102313335)


Basic Information

Item Value
gene id LOC122352097
gene name me3,LOC107748144,LOC107595810,LOC107695468,LOC107756775,LOC108426042,LOC102313335
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16761873 ~ 16767185 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249605.1
TAATAAAGTTCTGGTGCTGCTTTAACAGGGCATGGCGTTCACCCTGGAGGAAAGGCTACAGCTGGGTATCCATGGCCTGCTGCCTCCATGTTTCCTCTCTCAGGATGTCCAAGTGCTTCGTGTCATGAAGAGCTACGAGACACGCAGTAACCCTCTCGACAAATACATATTGCTGATGACGCTGCAGGACAGAAATGAGAAGCTTTTCTATCGTGTGCTAACCTCTGACATTGAAGAATTCATGCCTATCGTATACACTCCTACAGTGGGCCTGGCCTGCCAACAATATGGCCTCGCTTTCAGAAGACCAAGagGGTTATTTATCACTATCCATGACAAGGGGCATATTGCCACCATGCTGAATTCGTGGCCGGAGGAGGACATTAAGGCCATAGTGGTGACGGATGGAGAACAGATCCTGGGATTAGGAGACCTGGGCGGCTATGGAATGGGGATCCCAGTGGGCAAGCTAGCTCTGTATACAGCATGTGGAGGAGTGCCACCTCAGCAGTGCCTGCCTGTACTGCTGGATGTGGGCACTGATAATCAGacCCTCTTAGATGACCCCTTGTACATCGGCTTAAAGCACAAAAGAGTTAGAGGCAAAGAATACGATGACCTCATTGATGAGTTCATGCAAGCTGTCACCGACAAGTATGGGATGAATTGTCTAATTCAGTTTGAGGATTTTGCAAACAGCAATGCCTTTCGTATtctcaataaatataatcgTTATTGCACCTTTAATGATGATATCCAGGGCACAGCTTCTGTTGCTGTTGCCGGGGTCCTTGCTGCTCTTAAGATTACAAAGAATAAACTCTCTGACCACAAGTTTGTATTTCAGGGAGCAGGGGAGGCAGCCTTGGGCATTGCTCACTTACTCATAATGGCCATGGCCAAGGAAGGTGTACCTCACGCTGAGGCTGTCAAGAGGATTTGGATGGTGGATTCTAAAGGCCTGATTGTCAAGGGCAGAAGTCATCTGAACCATGAGAAGGAAGAATTTGCCCATGAGCATCCACACATAAAGACGCTAGATGAAGTGGTGGAAACCATCAAGCCCACAGCTATCATTGGTGTGGCTGCCATAGGTGGTGCTTTTACTGAGAAGATCATCAAGAACATGGCCGCTTACAACGAACGTCCAATTATTTTTGCTCTCAGTAATCCCACGAGCAAAGCTGAGTGCACAGCAGAGCAGTGTTACACGCTTACTGAGGGAAAGGGCATATTTGCCAGCGGAAGCCCCTTTAAAAAGGTCACTTTGGCAGATGGGCGCAGCTTCTACCCTGGCCAGGGAAACAATGCTTATGTGTTCCCTGGAGTAGCATTGGGAGTGATCGCCTGTGGTGTTCGTCACATCTCAGATGACATTTTCCTTACTACAGCAGAGGCGATTTCTGACATGGTTACTGAGGAGCATCTGGCTGAGGGCAGACTGTACCCCCCTCTGAATACCATCAGAGAAGTGTCCTTCAAAATTGCTGTTAAGattgtgGACCATGCCTACAAACAAGGAATTGCCTCCTGGTACCCTGAACCCAAGGATAAAGAGGCCTTTGTTTTATCCCAAGTTTATAACTCCGACTACGACTCCTTCACTCTAGATTCATACAGCTGGCCCAAGGATGCCATGAAAGTTCAGAACGTCTAGATTATTAATCTTCAGCCCACTAAAAAGGATATTCTCGTATCAGTCACATGCCTTATTTCTCAGTTCATAATCATCTGACGATATACACTCCAGCTGCAGGCCACCCACTCCTTAAACGGTAGCTGCTCCCATTGATTTGACAAAAGATGAGCTGTATTCCCTGAGAGCTTACAGCGATACAAGTATGCAGTGTTCATTCAAAGCTCAAACGTCTTCAGAACAGTGGTTCAGTTCAAAAGCAAAACTGCAGCTATGTTTAAAGCAGTAACGAGCACTTTCCCAAATCAACCGAGATAATGAATTTGTGATCTCCAGTTTATTAGTTCTAAGTTTGCATTCtgtcagttatttat

Function

symbol description
me3 Predicted to enable malate dehydrogenase (decarboxylating) (NADP+) activity. Predicted to be involved in malate metabolic process and pyruvate metabolic process. Predicted to be active in mitochondrion. Is expressed in pectoral fin musculature and pronephric duct. Orthologous to several human genes including ME3 (malic enzyme 3).

NR:

description
PREDICTED: NADP-dependent malic enzyme-like

GO:

id name namespace
GO:0006108 malate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249605.1 True 2010 mRNA 0.46 14 16761873 16767185

Neighbor

gene id symbol gene type direction distance location
LOC122351201 nxpe3,LOC107748146,LOC107673677,LOC107597504,LOC107695470,LOC107756776,LOC107595812 coding downstream 1701 16752003 ~ 16760172 (-)
slc35a5 LOC107748197,LOC107565955,LOC107673679,LOC107756781,LOC107695476 coding downstream 63234 16694754 ~ 16698639 (-)
dipk2b si:ch73-147f11.1,LOC107756741,LOC107695496,LOC107595885 coding downstream 177812 16579731 ~ 16584061 (-)
fundc1 fundc1,LOC107673665,LOC107748200,LOC107565940,LOC107695457,LOC107595886,LOC107756742 coding downstream 221222 16538368 ~ 16540651 (-)
efhc2 efhc2,LOC107673658,LOC107756743 coding downstream 223798 16526525 ~ 16538075 (-)
grtp1b grtp1b,LOC107748194,LOC107695480,LOC107673704 coding upstream 131478 16898663 ~ 16902174 (-)
ppp2r3b ppp2r3b,LOC107673721,LOC108426065,LOC107748139,LOC107695472,LOC108266308 coding upstream 171099 16938284 ~ 16954349 (-)
LOC122352140 NA coding upstream 349832 17117017 ~ 17131427 (-)
slc25a6 slc25a6,LOC107597494,LOC108426068,LOC107595824,LOC107695486,LOC107756767,LOC108266970 coding upstream 365285 17132470 ~ 17136795 (-)
asmtl asmtl,LOC107597490,LOC107673687 coding upstream 369956 17137141 ~ 17143357 (-)
G70979 NA non-coding downstream 9935 16751035 ~ 16751938 (-)
G70965 NA non-coding downstream 41300 16719515 ~ 16720573 (-)
G70966 gpr161,LOC107695469,LOC107756778,LOC107595811 non-coding downstream 44789 16715522 ~ 16717084 (-)
G70967 NA non-coding downstream 46771 16630486 ~ 16715102 (-)
G70991 NA non-coding upstream 59873 16827058 ~ 16829659 (-)
G71005 NA non-coding upstream 98093 16865278 ~ 16865589 (-)
G71006 NA non-coding upstream 98993 16866178 ~ 16866422 (-)
G70981 nxpe3,LOC107597504,LOC107748146,LOC107673677,LOC107695470,LOC107756776,LOC107595812 non-coding upstream 99307 16866492 ~ 16867522 (-)
G71035 NA non-coding upstream 150039 16917224 ~ 16919314 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other downstream 15651 16720804 ~ 16746222 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other downstream 990009 15771421 ~ 15771864 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 1362436 15389218 ~ 15399437 (-)
G70549 NA other downstream 1455898 15303103 ~ 15305975 (-)
LOC122351495 NA other downstream 2389199 14359646 ~ 14372674 (-)
G70986 pou2f1b,LOC107748141 other upstream 49955 16817140 ~ 16823775 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other upstream 119568 16886753 ~ 16889547 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 468687 17235872 ~ 17255491 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other upstream 597002 17364187 ~ 17521560 (-)
sema5ba sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063 other upstream 1484051 18251236 ~ 18366267 (-)

Expression


Co-expression Network