LOC122352102 (gabpa,LOC107695462,LOC107595806,LOC107597487,LOC107748128,LOC107756759)


Basic Information

Item Value
gene id LOC122352102
gene name gabpa,LOC107695462,LOC107595806,LOC107597487,LOC107748128,LOC107756759
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17208982 ~ 17214468 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249610.1
atACACTTAAGaggaaaacatatttacatagtaTCTAATAAAACGGTACAATGCGTCGATTTTCACACTTACGAACAGTTCAAGACAACACCGTTATCTGCTGCTAGCTATTATTTtgcacaaataatcaaataaatacctttatatattataatgtatagtTAATAACCACACAGAATGGGGAGTATGTTGCTGTCAGTGGGCAGCGAGGCCTCCTGCTCATCCCCGCCCCCATTGCAATGTTGACCAAAAACCAGCATGAACATTCACTCAACTTATTAGCACACACAAAACTATAGCCTCTGACTCCCATCTTTAGTGCGAAAAAACTCCAACACAGCACTTACTGACCGGGATAAAGAGTTGGACAAGGAGTTGAAGGGATGTCTAAAAGTGAGACAGAGGAGATGATTGAAATTGAGATTGATGGTCGGGAGAAACAGGAGTGTCTAGAGGAAGGGATTGAGGAGCAAACCATCACAGCAGCTGAATTGATTACCCAGGATATTGACATCAATGAGCCGATCGGTAACCTGAAGAAGTTACTGGAGCCTCGTCTTCAGGTCCCGCTGGATGGATATGACATTTGTCTGCAGGACATCCTATTGCATCCTGATCACAGCCTGTTCGATCAAGGAGTGAAGACAGATGGCACAGTACAGCTCAGCGTGCAGATTGTCACAAAACAGGGTGAAGAGAAATTGAATATTTTGGAGATTGTGAAGCCAGTGGAGACCGTGGAGGTGGTGATTGATCCAGACGCAGCTGCTGGCGAGGAAGCTCATCTGGTGGAGGATGGACATGTGATTGCGGTGGAGCGAGGCTCCATTCCTGATGAGACTTCAGAGCAGGTGACACGCTGGGCGGCTGCACTGGAAGGGTACCGCAAGGAGCAGGTTCGACTGAACATTCCCTATGACCCGGTGCAGTGGACAGCAGATCAGGTGATCCACTGGGCAGTTTGGGTTATGAAAGAGTTCGGCATTGAGGAGATGGAGGTGGGTGGCATACACATCGGTCGCCAGCTCTGTGGTTTTAGTCAGGAGGAGTTTCTTCAAAGAGTGCCCAGCGGAGAAATCCTGTGGAGCCACTTGGAGCTTTTACGCAAGTATGTACTTGCCAGTCAGGATCAGGGTCAGGAAGCAACAGTCACCATTGATCAACCTGTGCAGATCATTCCTGCCCCTGTGCAGCAGGCCACACCCACAGCCATTAAGGTGATGAAGCACAACAAAACACCCCGAGCCCGATCTCAGGAGAGGAGCGCAGCTCCTGGCAACCGCACAGGTAACAATGGTCAGATTCAGCTGTGGCAGTTTCTCCTGGAGCTGCTGACGGATAAGGACTCTCGGGACTGCATTTCCTGGGTCGGAGAGGAGGGCGAGTTCAAACTCAATCAGCCTGAGCTGGTAGCTCAGAAATGGGGCCAGCGCAAGAACAAGCCCACCATGAACTATGAGAAGCTAAGCAGAGCTCTCAGGTACTACTACGACGGAGACATGATCAGCAAAGTGCAGGGCAAGCGCTTTGTCTACAAATTTGTGTGCGACCTGAGGACTCTGATCGGATACAGCGCTGCAGAGCTCAACAGCCTGGTGACGGAGTGTGAACAGAAGAAACTGGCCCGGGTGCAGCTGCACGGCCTCGGCCAGCCCGTCAACACAGTCACGCTGGCCACCGCCACAGGCCAGCCCGTTACCACAGTCACCCTGGCCGCAGCAGCTTTAGAGAAAGACAGTTGAGGAGGAGTGGC

Function

symbol description
gabpa Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in endothelial cell. Orthologous to human GABPA (GA binding protein transcription factor subunit alpha).

NR:

description
PREDICTED: GA-binding protein alpha chain-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09441 GABPA; GA-binding protein transcription factor, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249610.1 True 1753 mRNA 0.50 12 17208982 17214468

Neighbor

gene id symbol gene type direction distance location
tfdp1a tfdp1a,LOC107748134,LOC107597491,LOC107595816,LOC107673714,LOC107756763,LOC107695478,LOC108426071 coding upstream 20894 17178483 ~ 17188088 (+)
shox shox,LOC107748138,LOC107597497,LOC107695485,LOC107673655,LOC107595822 coding upstream 172294 17027849 ~ 17036688 (+)
si:ch211-269e2.1 si:ch211-269e2.1,LOC107597498,LOC107673700,LOC107695463,LOC107756725 coding upstream 270708 16919401 ~ 16938274 (+)
med14 med14,LOC107756768,LOC107673705,LOC107595862,LOC107748179,LOC107695451 coding upstream 292838 16903078 ~ 16916144 (+)
lamp1b lamp1,LOC107756770,LOC107748140,LOC107673715,LOC107695490,LOC107595864 coding upstream 311144 16894423 ~ 16897838 (+)
LOC122351291 LOC107748130,LOC107673722,LOC107695483,LOC107595821 coding downstream 73475 17287943 ~ 17291835 (+)
LOC122351452 gabpa,LOC107756759,LOC107695462,LOC107595806,LOC107748128,LOC107597487 coding downstream 78524 17292992 ~ 17299145 (+)
si:dkey-192g7.3 NA coding downstream 105462 17319930 ~ 17323175 (+)
sona si:dkey-67c22.2,LOC107748125,LOC107673696,LOC107756753,LOC107597485,LOC107656780,LOC107569142 coding downstream 413850 17628318 ~ 17638227 (+)
rcan1a rcan1a,rcan1,LOC107673717,LOC107597484,LOC107748124,LOC107656781,LOC107756752,LOC107569144 coding downstream 424176 17638644 ~ 17647811 (+)
G71008 NA non-coding upstream 325081 16883642 ~ 16883901 (+)
G70844 NA non-coding upstream 328471 16880073 ~ 16880511 (+)
G70841 nxpe3,LOC107597504,LOC107748146,LOC107673677,LOC107695470,LOC107756776,LOC107595812 non-coding upstream 341480 16866490 ~ 16867502 (+)
G70837 pou2f1,LOC108266565 non-coding upstream 393580 16814830 ~ 16815402 (+)
G70804 NA non-coding upstream 592918 16615538 ~ 16616064 (+)
G71086 NA non-coding downstream 69602 17284070 ~ 17287296 (+)
LOC122351293 NA non-coding downstream 77396 17291864 ~ 17292889 (+)
G71088 LOC107595805,LOC107695460,LOC107597486,LOC107748127,LOC107756757 non-coding downstream 93115 17307583 ~ 17309040 (+)
G71089 NA non-coding downstream 96517 17310985 ~ 17315810 (+)
G71126 NA non-coding downstream 109331 17323799 ~ 17324342 (+)
jam2b LOC107748130,LOC107673722,LOC107695483,LOC107595821,LOC107597562 other upstream 762 17203797 ~ 17208220 (+)
si:ch211-218d20.15 LOC107748193,LOC107695487,LOC107756736,LOC107673701,LOC107597587 other upstream 289692 16916761 ~ 16919290 (+)
mpc2b mpc2,LOC107695492,LOC107673680 other upstream 459281 16745893 ~ 16749701 (+)
G70814 NA other upstream 477621 16728507 ~ 16731361 (+)
rabl3 rabl3,LOC107569739,LOC107690631,LOC107659889,LOC107595844,LOC107736356 other upstream 1307262 15899427 ~ 15901720 (+)
G71130 NA other downstream 124659 17339127 ~ 17339622 (+)
lrp1bb lrp1b,LOC107661145,LOC107660661,LOC107746259,LOC107714450 other downstream 521538 17736006 ~ 17964244 (+)
clasp1a clasp1a,LOC107741904,LOC107555920,LOC107660633,LOC107673735,LOC107714287 other downstream 1335468 18549936 ~ 18610928 (+)
tfcp2l1 tfcp2l1,LOC107673739,LOC107714264,LOC107596086 other downstream 1397527 18611995 ~ 18619387 (+)
plcd4b plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071 other downstream 1420638 18635106 ~ 18642486 (+)

Expression


Co-expression Network