tfcp2l1 (tfcp2l1,LOC107673739,LOC107714264,LOC107596086)


Basic Information

Item Value
gene id tfcp2l1
gene name tfcp2l1,LOC107673739,LOC107714264,LOC107596086
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18611995 ~ 18619387 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249635.1
TAAATAGCGGTCCAGAAGGGTCCGTCAGAGCGCCGGACACAGAGGATGAAGGCAGAGTGACGGACACTCACAGGTCACCTGACGGACGTCGCGCGGCCATAAAAGACGGCGGACACGTCGTTTAGAGAAAAGCCTTTGCGGCCCTCACGGTCCCCTCACCGGCGACCGCGCGTTTAACTACTCGTATTTTTGTACAAAAGCTTCACCGAACTGGATAGTATGCTGTTTTGGCACAGTCATCCTGAAACCTATCAACAGCACACGCAAAATAATTATGTAAGAGATGCTCTCGCTCCGTTTCTCAAGCACGAAGAGGAGCAGCAGTCCCCTGAGGTCCGAGTGTCTCCTTTTCATTATGTGCTTTGCGCAGCCACATCTCCAGCTGTGAAACTCCAGGAAGAATCGCTCACGTATCTGAATCAAGGTCAGTCCTATGAAATCCGTATGCTTAACAGGAAACTAGTGGAGTATACAGATATATGCGGTAAATATGTAAAGAGCATTGTGCGTGTTGTTTTTCATGACCGACGGCTGCAGTACACAGAGCATCAGCAGCTGGAGGGATGGAGGTGGAACCGACCTGGAGACAGAATCTTGGATATAGATATCCCATTGTCAGTGGGCATAATAGAGCCGCGAGCCCACCCACTGCAGCTCAACACCATAGAGTTTCTCTGGGATCCTGACAAAAATGCCTCCGTGTTCATTCAGGTAAACTGCATTAGCACTGAGTTCACTCCGAAAAAACATGGTGGAGAGAAGGGCGTCCCTTTCCGCATACAGATAGACACCTTTGCAGTCGGTGAGCACGAAGAATACACTGAACACATGCGCTCCGCCAGCTGCCAGGTCAAAGTCTTCAAGCCAAAAGGTGCAGATCGCAAACTCAAGACTGACAGAGAGAAGATTGAGAAAAAGAGTCCCCAGGATCGAGAAAAATATCAGCCATCCTATAAAACAACAGTGCTGACTGAGtgcTCCCCTTGGCCTGAAGCCCAATCAGTCAGCAGAACTAGCAACAGTCCATCTCCTGGTTATCACACCGCTCACACGACCTACAGCTTCCCAGAGGAAAACTGCTCTCCAGACCAGCAAGGGGATCTGCTTTTGCCCAGCTGCTCTGATCACCTGTTGCCATCGTCCTCCACGCAGGACACGCAGCAGTGGCTCCATCTTAATAGGTTCTCCTCTTTCTGCAGGCTCTTCTCAGGCTTCTCAGGCTCTGATCTCCTGAAAATGACTAGAGAAGATTTTATTCAGATCTGTGGTCCTGCTGACGGCATTCGTCTTTTCAATGCCATCAAAGGAAGGTGTATACAACCTCGTCTAACTGTCTATGTATCCCAGCTACAGAACAGCAACCAACTGCACACCAAAGCAGCGGGTGATGATGTGTACCATGCTCTCTACCTAGAGGACCTAACTGTCCTTGAGCTCACTGAGAAGATAGCCAATCTTTATAATGTTCCCTCACAGCAAATCTTTCGCGTATACAGACAGGGGCCGACGGGGATCCACGTCTTGGTTTCAGATGAGATGGTGCAGAACTTTACAGAAGAGACTAGCTTCATTATCAGCACCATGAAAGATGAAAGAAATGATGTCTATCATGTTGTACTGAAGTGACCTGAGACTGATGGAGCGTTACAGGTGCCTTTAGCAAATCTTCACAATACTGGACTGTTTCTAAGTTTAATATCACCTGGAGGAATGTGAACTGAATGAATGCGGATCATTTTTGTATGTAGATGattgttctgtattttaaagtgaagctttttatattttatgtaagtcatgatcagtttatatatttctgtgtaaaagtaattatttttataatattgctGTGTTGTTGTGGCATTCTTCTTTTTTCGAACCATTAtcagacttttttcttttttattgttagatATGAAATGGCAAATACATGATTTTTAATGCAGATGgccttaaaacacacacacacacacaatttcttatatttatatttaatgtcatgatttttatgtgtaataattattattataaaccatTTGTAGATATTggtattaattttaattttactgtcGTACACAAACATGGATTTTACAGATCCCTAAATAATTGCTAGCAGAAAATCTCTCAATAATGTTGGAGTGAAATGTTCCATCAATTGTTCATCGCGGACTGCAGATATCGAAATAAAGCAATTGCTCAGGA
>XR_006251851.1
TTAAATAGCGGTCCAGAAGGGTCCGTCAGAGCGCCGGACACAGAGGATGAAGGCAGAGTGACGGACACTCACAGGTCACCTGACGGACGTCGCGCGGCCATAAAAGACGGCGGACACGTCGTTTAGAGAAAAGCCTTTGCGGCCCTCACGGTCCCCTCACCGGCGACCGCGCGTTTAACTACTCGTATTTTTGTACAAAAGCTTCACCGAACTGGATAGTATGCTGTTTTGGCACAGTCATCCTGAAACCTATCAACAGCACACGCAAAATAATTATGTAAGAGATGCTCTCGCTCCGTTTCTCAAGCACGAAGAGGAGCAGCAGTCCCCTGAGGTCCGAGTGTCTCCTTTTCATTATGTGCTTTGCGCAGCCACATCTCCAGCTGTGAAACTCCAGGAAGAATCGCTCACGTATCTGAATCAAGGTCAGTCCTATGAAATCCGTATGCTTAACAGGAAACTAGTGGAGTATACAGATATATGCGGTAAATATGTAAAGAGCATTGTGCGTGTTGTTTTTCATGACCGACGGCTGCAGTACACAGAGCATCAGCAGCTGGAGGGATGGAGGTGGAACCGACCTGGAGACAGAATCTTGGATATAGATATCCCATTGTCAGTGGGCATAATAGAGCCGCGAGCCCACCCACTGCAGCTCAACACCATAGAGTTTCTCTGGGATCCTGACAAAAATGCCTCCGTGTTCATTCAGGTAAACTGCATTAGCACTGAGTTCACTCCGAAAAAACATGGTGGAGAGAAGGGCGTCCCTTTCCGCATACAGATAGACACCTTTGCAGTCGGTGAGCACGAAGAATACACTGAACACATGCGCTCCGCCAGCTGCCAGGTCAAAGTCTTCAAGCCAAAAGGTGCAGATCGCAAACTCAAGACTGACAGAGAGAAGATTGAGAAAAAGAGTCCCCAGGATCGAGAAAAATATCAGCCATCCTATAAAACAACAGTGCTGACTGAGtgcTCCCCTTGGCCTGAAGCCCAATCAGTCAGCAGAACTAGCAACAGTCCATCTCCTGGTTATCACACCGCTCACACGACCTACAGCTTCCCAGAGGAAAACTGCTCTCCAGACCAGCAAGGGGATCTGCTTTTGCCCAGCTGCTCTGATCACCTGTTGCCATCGTCCTCCACGCAGGACACGCAGCAGTGGCTCCATCTTAATAGGTTCTCCTCTTTCTGCAGGCTCTTCTCAGGCTTCTCAGGCTCTGATCTCCTGAAAATGACTAGAGAAGATTTTATTCAGATCTGTGGTCCTGCTGACGGCATTCGTCTTTTCAATGCCATCAAAGGAAGGTGTATACAACCTCGTCTAACTGTCTATGTATCCCAGCTACAGAACAGCAACCAACTGCACACCAAAGCAGCGGGTGATGATGGTAGGAGACATCACGCAAATCTTTCGCGTATACAGACAGGGGCCGACGGGGATCCACGTCTTGGTTTCAGATGAGATGGTGCAGAACTTTACAGAAGAGACTAGCTTCATTATCAGCACCATGAAAGATGAAAGAAATGATGTCTATCATGTTGTACTGAAGTGACCTGAGACTGATGGAGCGTTACAGGTGCCTTTAGCAAATCTTCACAATACTGGACTGTTTCTAAGTTTAATATCACCTGGAGGAATGTGAACTGAATGAATGCGGATCATTTTTGTATGTAGATGattgttctgtattttaaagtgaagctttttatattttatgtaagtcatgatcagtttatatatttctgtgtaaaagtaattatttttataatattgctGTGTTGTTGTGGCATTCTTCTTTTTTCGAACCATTAtcagacttttttcttttttattgttagatATGAAATGGCAAATACATGATTTTTAATGCAGATGgccttaaaacacacacacacacacaatttcttatatttatatttaatgtcatgatttttatgtgtaataattattattataaaccatTTGTAGATATTggtattaattttaattttactgtcGTACACAAACATGGATTTTACAGATCCCTAAATAATTGCTAGCAGAAAATCTCTCAATAATGTTGGAGTGAAATGTTCCATCAATTGTTCATCGCGGACTGCAGATATCGAAATAAAGCAATTGCTCAGGA
>XR_006251852.1
TAAATAGCGGTCCAGAAGGGTCCGTCAGAGCGCCGGACACAGAGGATGAAGGCAGAGTGACGGACACTCACAGGTCACCTGACGGACGTCGCGCGGCCATAAAAGACGGCGGACACGTCGTTTAGAGAAAAGCCTTTGCGGCCCTCACGGTCCCCTCACCGGCGACCGCGCGTTTAACTACTCGTATTTTTGTACAAAAGCTTCACCGAACTGGATAGTATGCTGTTTTGGCACAGTCATCCTGAAACCTATCAACAGCACACGCAAAATAATTATGTAAGAGATGCTCTCGCTCCGTTTCTCAAGCACGAAGAGGAGCAGCAGTCCCCTGAGGTCCGAGTGTCTCCTTTTCATTATGTGCTTTGCGCAGCCACATCTCCAGCTGTGAAACTCCAGGAAGAATCGCTCACGTATCTGAATCAAGGTCAGTCCTATGAAATCCGTATGCTTAACAGGAAACTAGTGGAGTATACAGATATATGCGGTAAATATGTAAAGAGCATTGTGCGTGTTGTTTTTCATGACCGACGGCTGCAGTACACAGAGCATCAGCAGCTGGAGGGATGGAGGTGGAACCGACCTGGAGACAGAATCTTGGATATAGATATCCCATTGTCAGTGGGCATAATAGAGCCGCGAGCCCACCCACTGCAGCTCAACACCATAGAGTTTCTCTGGGATCCTGACAAAAATGCCTCCGTGTTCATTCAGGTAAACTGCATTAGCACTGAGTTCACTCCGAAAAAACATGGTGGAGAGAAGGGCGTCCCTTTCCGCATACAGATAGACACCTTTGCAGTCGGTGAGCACGAAGAATACACTGAACACATGCGCTCCGCCAGCTGCCAGGTCAAAGTCTTCAAGCCAAAAGGTGCAGATCGCAAACTCAAGACTGACAGAGAGAAGATTGAGAAAAAGAGTCCCCAGGATCGAGAAAAATATCAGCCATCCTATAAAACAACAGTGCTGACTGAGtgcTCCCCTTGGCCTGAAGCCCAATCAGTCAGCAGAACTAGCAACAGTCCATCTCCTGGTTATCACACCGCTCACACGACCTACAGCTTCCCAGAGGAAAACTGCTCTCCAGACCAGCAAGGGGATCTGCTTTTGCCCAGCTGCTCTGATCACCTGTTGCCATCGTCCTCCACGCAGGACACGCAGCAGTGGCTCCATCTTAATAGGTTCTCCTCTTTCTGCAGGCTCTTCTCAGGCTTCTCAGGCTCTGATCTCCTGAAAATGACTAGAGAAGATTTTATTCAGATCTGTGGTCCTGCTGACGGCATTCGTCTTTTCAATGCCATCAAAGGAAGGTGTATACAACCTCGTCTAACTGTCTATGTATCCCAGCTACAGAACAGCAACCAACTGCACACCAAAGCAGCGGGTGATGATGCAAATCTTTCGCGTATACAGACAGGGGCCGACGGGGATCCACGTCTTGGTTTCAGATGAGATGGTGCAGAACTTTACAGAAGAGACTAGCTTCATTATCAGCACCATGAAAGATGAAAGAAATGATGTCTATCATGTTGTACTGAAGTGACCTGAGACTGATGGAGCGTTACAGGTGCCTTTAGCAAATCTTCACAATACTGGACTGTTTCTAAGTTTAATATCACCTGGAGGAATGTGAACTGAATGAATGCGGATCATTTTTGTATGTAGATGattgttctgtattttaaagtgaagctttttatattttatgtaagtcatgatcagtttatatatttctgtgtaaaagtaattatttttataatattgctGTGTTGTTGTGGCATTCTTCTTTTTTCGAACCATTAtcagacttttttcttttttattgttagatATGAAATGGCAAATACATGATTTTTAATGCAGATGgccttaaaacacacacacacacacaatttcttatatttatatttaatgtcatgatttttatgtgtaataattattattataaaccatTTGTAGATATTggtattaattttaattttactgtcGTACACAAACATGGATTTTACAGATCCCTAAATAATTGCTAGCAGAAAATCTCTCAATAATGTTGGAGTGAAATGTTCCATCAATTGTTCATCGCGGACTGCAGATATCGAAATAAAGCAATTGCTCAGGA

Function

symbol description
tfcp2l1 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in hypophysis. Orthologous to human TFCP2L1 (transcription factor CP2 like 1).

NR:

description
transcription factor CP2-like protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249635.1 True 2202 mRNA 0.44 15 18611996 18619387
XR_006251851.1 False 2135 transcript 0.44 15 18611995 18619387
XR_006251852.1 False 2119 transcript 0.44 15 18611996 18619387

Neighbor

gene id symbol gene type direction distance location
nifk nifk,LOC107741903,LOC107660635,LOC107555919,LOC107714465,LOC107580417 coding upstream 62606 18546236 ~ 18549389 (+)
LOC122352188 NA coding upstream 63388 18548481 ~ 18548607 (+)
LOC122352186 NA coding upstream 64713 18547160 ~ 18547282 (+)
cacnb4a cacnb4,cacnb4a,LOC107660636,LOC107741900,LOC108434427 coding upstream 74944 18518212 ~ 18537051 (+)
stam2 stam2,LOC107661142,LOC107596068,LOC107555917,LOC107714296,LOC107660637,LOC107741902 coding upstream 101969 18500302 ~ 18510026 (+)
ddx18 ddx18,LOC107673737,LOC107741906,LOC107660632,LOC107596072,LOC107714379 coding downstream 1499 18620886 ~ 18626414 (+)
LOC122351849 bcs1l,LOC107741911,LOC107555925,LOC107673730,LOC107714219 coding downstream 29825 18649212 ~ 18652922 (+)
LOC122351848 cyp27a7,LOC107741910,LOC107660625,LOC107714212,LOC107660626,LOC107555927 coding downstream 33684 18653071 ~ 18657710 (+)
LOC122351850 LOC107555927,LOC107660626,LOC107741910,LOC107714212,LOC107660625,LOC107596087 coding downstream 40378 18659765 ~ 18662870 (+)
LOC122351791 LOC107555929,LOC107660624,LOC107741913,LOC107714185,LOC107673745,LOC107596074 coding downstream 43964 18663351 ~ 18674738 (+)
G71334 NA non-coding upstream 67997 18543774 ~ 18543998 (+)
G71333 NA non-coding upstream 70659 18540883 ~ 18541336 (+)
G71331 NA non-coding upstream 73295 18538480 ~ 18538700 (+)
G71221 NA non-coding upstream 581447 18028361 ~ 18030548 (+)
G71167 NA non-coding upstream 969557 17641910 ~ 17642438 (+)
G71442 LOC103022703,LOC103363874,LOC107673729,LOC107721018,LOC107596080,LOC107660614,LOC107555938 non-coding downstream 128524 18747911 ~ 18892052 (+)
LOC122351431 NA non-coding downstream 270536 18889923 ~ 18893969 (+)
G71457 LOC107662043,LOC107555909,LOC107741926,LOC107556197,LOC107660610,LOC107721020 non-coding downstream 360926 18980313 ~ 18985811 (+)
G71509 NA non-coding downstream 631452 19250839 ~ 19251157 (+)
G71517 NA non-coding downstream 636643 19256030 ~ 19256233 (+)
clasp1a clasp1a,LOC107741904,LOC107555920,LOC107660633,LOC107673735,LOC107714287 other upstream 1067 18549936 ~ 18610928 (+)
lrp1bb lrp1b,LOC107661145,LOC107660661,LOC107746259,LOC107714450 other upstream 647751 17736006 ~ 17964244 (+)
G71130 NA other upstream 1272373 17339127 ~ 17339622 (+)
jam2b LOC107748130,LOC107673722,LOC107695483,LOC107595821,LOC107597562 other upstream 1403775 17203797 ~ 17208220 (+)
si:ch211-218d20.15 LOC107748193,LOC107695487,LOC107756736,LOC107673701,LOC107597587 other upstream 1692705 16916761 ~ 16919290 (+)
plcd4b plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071 other downstream 15719 18635106 ~ 18642486 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other downstream 63285 18682672 ~ 18689542 (+)
cps1 cps1,LOC107660611,LOC107741925 other downstream 277215 18896602 ~ 18931462 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other downstream 893467 19512854 ~ 19543677 (+)
G71585 NA other downstream 1001897 19621284 ~ 19621493 (+)

Expression


Co-expression Network