sec22a (sec22a,LOC107722877,LOC107555913,LOC107660641,LOC107596098,LOC107661143,LOC107714480)


Basic Information

Item Value
gene id sec22a
gene name sec22a,LOC107722877,LOC107555913,LOC107660641,LOC107596098,LOC107661143,LOC107714480
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18416183 ~ 18425068 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249667.1
AGGCGAAATTGTCCGAAGCTGTGTCGAACGTGAGCAGAAGCATCTGCTATGATACTTGCAGGACGAGCTCAGCGACCACGATATTATATTCGCAGAATATCTCAAAAAGGAATACAATGGtctaatatactttaaaacGACTCATGCCAGTAGGTGTCCACTGAGCTGCCTGTAAGATGTCTATGGTGCTGTTTGCATCGGTGGTGAGGGTGAGGGACGGTCTACCACTCTCTGCCTCAACTGACTATGAACAGGATAAAGGATTTCAGGAGACTAAGAAACACCTCAAGGGTCTCTCCAAAAAACTCAGCCAGTTTCCTGATCGCTGCTCACTCAGATCTGGTCTTTATAACATCAATTTCACAAGCTCTCTTGGAGTCGGGTATTTGATGGTTTGCACAGAAACCTATCCCAATGTCCTGGCCTTCAGCTTCCTGGACGAACTTCAGAGAGAGTTCATTGTCACGTATGACACCAAGCGGATCAACAGCGCTTTGAGGCCTTTCTCTTTTATTGAGTTTGATAACTTCATTCGGAAAACCAAGCAACGTTACAACAGCCCACGTTCTCTCTCAACCAAGATTAATCTGGCCGACATGCAGACTGAGATCAAGCTCCGGCCTCCTTATCAGCTGTCCACGGAGGACATTGGATCAATCAACGGCTTCTCACAACACAAGCAGTCTAAATATAAAGGCATAGCTCCTAATCAAATGTTGGAGGCCATCACCCTGTCGGGTATCATCGCCTGTGTCCTAAGTGTCCTGTGTGCCGCTCTTAATTTGCTGCGGGGAGTCCACGCAATAGAAAGTGTATTGCAGAACGAGGATGAAGACTTTAATTACGTAATTGCTTTTTTCCTTGGAACCACGGCCTGTTTGTATCAGTGTTACTTGTTCGCCTACTACTCAGTTTGGAGGAACATCAAGTCATTCCTGGCCTTTGCTATGATCTGCCTATGTAACATGTATCTGTATGAACTCCGTAACATGTGGCAGATCCTCTTTCACGTGACGGTGGGAGCGTTCATCACTCTGCAGATCCACCTGAGAAGACCGCAGGGCAAATCACCCGACTACAACGTTTGACCCCCCCTTGAACTCTTGAGACTATTTGCCCAACATGGCAACCCCAAACCTGTTCAAACCCCATCTAAGTACAAAGGAACTATGGACTGTGAAGCAGGTTTTACTGAATATTTTGAtaatgttcaagaaacatttcctgcTGTTTCACATCCACCTGAGGTCACAGATGAGAAACCGGTGTTCTTGTTGATGCAAAAGGTTCATGACAGAGGCTTTAAGCTCATGGCATTAGATTCATGCATGAATAATTGAAGGAAGCATTAGCAATTGTGcacaatgaatatattttccAATAGGGAATTgtagttattttatgtttaattgaCATCAgtgcttaaagggacagctcacccagaaatgaaaattcttacatttcttgtaaaatgttCACATGGCTTGTCTTCATTAGGATTAAaaggataaaaaataaagacagaaagcCTAATCAATTCTGATTAAAGcatctaattaaaatataaaaaagtaacagaTGCATTTTCTgcagcaaaatatttaaatactaaatcaaCGTTTTTGTATAtgttcgtttttgttttgtttttttgcttcatattaaagattttacatattaaaaattggTTTGGTTCATAGCGTATAACTCTTAAGGACAAAAAGGAATTAAATGAACTGGAAAAATACTATTGCAAAAATTGGGCAAGCACCGTTGCACTTTAACCATGTTTAAGAAACAGACCTAGTTGTAAGTTATTTACTAGTTCAGTAACAAACTCTTGCCTGACATGTAATTATTCACATTATACTGCGGTAAATCACAGCTTATACATTCATCTAAACAATTCGAGTACCaccaaatacagaaatgatAAAAACCTTTCATTCTTGGGCGATCTTTTCATTTAAGATGCAATTTTAGATTGTTTTGACGCATTGTTTCTCTATTTTGATTGTTAAAGCCAACTCGTATGCAAGACTTTTTATAgctgcttatttaaaaaaatgaacatcgCTGGATTTTCACTCATTTCTGCAAAAGCAGACgttggtgatttttattttgtcacatGTTTTGATAGACGCCTAATTTGAGTGTCACTGTGTTTGTGGTCGTTAGTCGGACGTCTCTGCCCTGAAAGCATAGTCagttattgtgttatttatcAGTTGTGTCTATTCTGCCTGCAGGTGTGCAAATGAATGTGGTTGGCTGAGAGAGAAACTGAATCGCACTCATAGACGGTCTCTGCTTTATCCACCTCGGTGTTTGCTGCCTTTTGTCAACGGGTCTGGTATGAATgttgtgtttaattttgtttctgttcaCCTGGTTTGTTTTCGCAGCGCAAAGGACAGGTTAAATGGATGTCTGAAAGATTAAGAGATGATATGTGCGTTTCTTTTTTCTCCAAGTGTCGGTGATCAAAGATTGCatctgcgttttttttttatatgctctCTCCAGCAGTAGTGCATTGCCTTGCCAGTTTGTACTCTGACGTTAAAGGGCCGGTCTTGAAATCATCAGTAAAAACCTTGATTTGTA

Function

symbol description
sec22a Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SEC22A (SEC22 homolog A, vesicle trafficking protein).

NR:

description
PREDICTED: vesicle-trafficking protein SEC22a isoform X1

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048280 vesicle fusion with Golgi apparatus biological_process
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08520 SEC22A_C; SEC22 vesicle trafficking protein A/C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249667.1 True 2610 mRNA 0.40 7 18416183 18425068

Neighbor

gene id symbol gene type direction distance location
pdia5 pdia5,LOC107661141,LOC107596065,LOC107660642,LOC107555900 coding upstream 3542 18368743 ~ 18412641 (+)
slc49a4 dirc2,LOC107597477,LOC107596062 coding upstream 175465 18205648 ~ 18240718 (+)
slc15a2 slc15a2,LOC107722867,LOC107660645,LOC107597582 coding upstream 219880 18185732 ~ 18196303 (+)
gli2a gli2a,LOC107722873,LOC107660646,LOC107661135,LOC107714335,LOC107596061 coding upstream 236958 18113553 ~ 18179225 (+)
inhbb LOC107597480,LOC107722876,LOC107660647 coding upstream 359439 18049032 ~ 18056744 (+)
stam2 stam2,LOC107661142,LOC107596068,LOC107555917,LOC107714296,LOC107660637,LOC107741902 coding downstream 75234 18500302 ~ 18510026 (+)
cacnb4a cacnb4,cacnb4a,LOC107660636,LOC107741900,LOC108434427 coding downstream 93144 18518212 ~ 18537051 (+)
nifk nifk,LOC107741903,LOC107660635,LOC107555919,LOC107714465,LOC107580417 coding downstream 121168 18546236 ~ 18549389 (+)
LOC122352186 NA coding downstream 122092 18547160 ~ 18547282 (+)
LOC122352188 NA coding downstream 123413 18548481 ~ 18548607 (+)
G71221 NA non-coding upstream 385635 18028361 ~ 18030548 (+)
G71167 NA non-coding upstream 773745 17641910 ~ 17642438 (+)
G71162 NA non-coding upstream 808353 17607512 ~ 17607830 (+)
G71133 NA non-coding upstream 1075266 17340700 ~ 17340917 (+)
G71132 NA non-coding upstream 1075614 17340342 ~ 17340569 (+)
G71331 NA non-coding downstream 113412 18538480 ~ 18538700 (+)
G71333 NA non-coding downstream 115815 18540883 ~ 18541336 (+)
G71334 NA non-coding downstream 118706 18543774 ~ 18543998 (+)
G71442 LOC103022703,LOC103363874,LOC107673729,LOC107721018,LOC107596080,LOC107660614,LOC107555938 non-coding downstream 322843 18747911 ~ 18892052 (+)
LOC122351431 NA non-coding downstream 464855 18889923 ~ 18893969 (+)
lrp1bb lrp1b,LOC107661145,LOC107660661,LOC107746259,LOC107714450 other upstream 451939 17736006 ~ 17964244 (+)
G71130 NA other upstream 1076561 17339127 ~ 17339622 (+)
jam2b LOC107748130,LOC107673722,LOC107695483,LOC107595821,LOC107597562 other upstream 1207963 17203797 ~ 17208220 (+)
si:ch211-218d20.15 LOC107748193,LOC107695487,LOC107756736,LOC107673701,LOC107597587 other upstream 1496893 16916761 ~ 16919290 (+)
mpc2b mpc2,LOC107695492,LOC107673680 other upstream 1666482 16745893 ~ 16749701 (+)
clasp1a clasp1a,LOC107741904,LOC107555920,LOC107660633,LOC107673735,LOC107714287 other downstream 124868 18549936 ~ 18610928 (+)
tfcp2l1 tfcp2l1,LOC107673739,LOC107714264,LOC107596086 other downstream 186927 18611995 ~ 18619387 (+)
plcd4b plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071 other downstream 210038 18635106 ~ 18642486 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other downstream 257604 18682672 ~ 18689542 (+)
cps1 cps1,LOC107660611,LOC107741925 other downstream 471534 18896602 ~ 18931462 (+)

Expression


Co-expression Network