gtf2e1 (gtf2e1,LOC107733656,LOC107738514)


Basic Information

Item Value
gene id gtf2e1
gene name gtf2e1,LOC107733656,LOC107738514
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11232007 ~ 11244430 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249678.1
TGCTGAACTAGGAAACTTGTTCAGATCTACACAGGAGGAAAATTAAAGTTGTACCCCTCCATCATGACTGAACCAGAGCTGCTCACAGAGGTCCCCGCTTCTCTGAAACGGCTAGCCAAGCAGGTTGTGCGAGGTTTCTATGGCATCGAGCATGCTCTCGCTCTGGATGTGCTGATCCGTAACCCCTGCGTACGTGAGGAGGACATGCTGGAGCTGCTCAAGTTTGACCGCAAGCAGTTGCGTTCGGTTCTGAACACACTCAAGGCTGACAAGTTTGTCAAATGCCGTATGCGTGTGGAGACGGCACCTGACGGCAAGACGACGCGACACAATTACTATTTCATTAACTACCGGCTGCTGGTTAATGTGGTGAAGTACAAGCTGGACCACATGCGTAGACGCATTGAGACGGACGAACGGGACTCGACTAACAGAGCCTCCTTCCGCTGCCCCTGCTGCATGAACACGTTCACCGACCTTGAGGCCAACCAGCTGTTTGACCCCATGACTGGAACGTTCCGCTGTACCTTCTGTCAAACAGAAGTAGAGGAGGACGAATCGGCCGTGCCAAAGAAAGATGCCCGTACTCTGGTGGCGCGATTCAATGAGCAAATCGAGCCTATTTATGTATTGCTACGTGAGACTGAGGACATCAACTTGTCGCATGATCTTCTGGAGCCCGAACCGTCAGAAATCCCAGCCCTTAAACAAAGTCGGGAACGGGCTGCCCAGGCTGCAGGAGCTGGTGCAGGGCTACCTGGTCGGGAAGTATGGAAAAACAAAGGCTCATCATATGACCTCTACTCACAGGATGTGGTCATCAGCATGGAGGACCAGGAGCCTCAGCCTGGCCAGACTAACGAGGGAAAAGCCCCCAAAGAGAGGCCCGTATGGCTGACAGAAAGCACAGTGCAGGGGGCGTACAACGAGACGGATGCTCTGAAGCAGCCTGGCGAGGACTCTATAGTAACTCAGGAGGGAATGACTGGACGAGGAGCCGCACAGGATGAGAACGAGGAGGTGATGCTGGCTCTTCTCATTCACGAGAAGAGGAGCGGAGCCGGTCCAGGAGGTGCCATGGTCTCCAGACCGACCGTTCCAGCGGCTAACGCCAGCGACTCTGACAGCGATACCAGTGAGTCAGATGAAGACTCGCCGCCTCAGGCTCCAGCCCACACTATGCTCAATCCTACAGCCCCGCGACCGGGAAAACAAGACGACGAAGAGGacgaagatgatgatgatgagttCGAGGAGGTTGGGGACGACCCTGTGGTTATGGTAGGGGGAAGACCTTTCTCTTACAGGGAGGTGAGCCAGAGACCCGAGCTGGTGGAACAGATGAGCGCTCAGGAGAAAGAGGCGTACATTGAAATGGGCCAGAACCTCTTCCAGGACATGTACTTCTGAGTTCATCCTGTCTGTCCGCATCACATTCGTTCTTGCATTTGATTCGTCCTTTGCACAGTCTCAAACGGTGTTGTGCGACATGCCAGAGCTGACAAATGTAGTGTTATATCGTTGATCGTTCTTCTATTTTCTCATCCCTCTGCCATATTCTCATATAAATCTACTCTGGTGCCAATGATACCAAAGTATCACGGTTGTAAACAAGAGTATCGTACATTGGCAAACATGCTCACAGCGCTACCTTTCCGGTTTGTTTGCCGTCTCGCCACATTCAGAGACGTCCAAATGAATAACAGTGTTGCTGCAGTGACCTCTGGGACGGTTTTACTCAAAAGAAAACCCCAAACCGAATGGTTCAGGGGCTTTTCCTCATTTTTGAATGACAGCAAGTGACAAATGTTGTTTTGCTCAAAGCTACAGAGACATTTCTGCATCGTCTTGCTTTCGCATCTATTTCCACAGCTATTTTTCTCAACAGTATTTAGCAGGACTTGCGGTTTGAAAGGAAGGACAAGTGATTTTGTTTTCAGCTGACTGCCTTGACGTGATATTAAATGGAGTTTTGATGAGATATGTTTGTTTAGAGCGTGATTGCTTTCCTTTCACAGCAGAAATgagcactttcttcttctgatCTCTGCCTCAGTGGACATTATTCACTTCTTTTTGTTTATCCATAAGTGGAAAAAgaacgttgttgtttttttttagttcgttagacattttacagtaataaaaagcAGAGTGTAAAAACTTCAA
>XM_043249679.1
CGCCAACATCTCATGCGTCATTTCCGCTGAACGTTAGCGTGATGCTGAACTAGGAAACTTGTTCAGATCTACACAGGAGGAAAATTAAAGGTTTGAGTTGTACCCCTCCATCATGACTGAACCAGAGCTGCTCACAGAGGTCCCCGCTTCTCTGAAACGGCTAGCCAAGCAGGTTGTGCGAGGTTTCTATGGCATCGAGCATGCTCTCGCTCTGGATGTGCTGATCCGTAACCCCTGCGTACGTGAGGAGGACATGCTGGAGCTGCTCAAGTTTGACCGCAAGCAGTTGCGTTCGGTTCTGAACACACTCAAGGCTGACAAGTTTGTCAAATGCCGTATGCGTGTGGAGACGGCACCTGACGGCAAGACGACGCGACACAATTACTATTTCATTAACTACCGGCTGCTGGTTAATGTGGTGAAGTACAAGCTGGACCACATGCGTAGACGCATTGAGACGGACGAACGGGACTCGACTAACAGAGCCTCCTTCCGCTGCCCCTGCTGCATGAACACGTTCACCGACCTTGAGGCCAACCAGCTGTTTGACCCCATGACTGGAACGTTCCGCTGTACCTTCTGTCAAACAGAAGTAGAGGAGGACGAATCGGCCGTGCCAAAGAAAGATGCCCGTACTCTGGTGGCGCGATTCAATGAGCAAATCGAGCCTATTTATGTATTGCTACGTGAGACTGAGGACATCAACTTGTCGCATGATCTTCTGGAGCCCGAACCGTCAGAAATCCCAGCCCTTAAACAAAGTCGGGAACGGGCTGCCCAGGCTGCAGGAGCTGGTGCAGGGCTACCTGGTCGGGAAGTATGGAAAAACAAAGGCTCATCATATGACCTCTACTCACAGGATGTGGTCATCAGCATGGAGGACCAGGAGCCTCAGCCTGGCCAGACTAACGAGGGAAAAGCCCCCAAAGAGAGGCCCGTATGGCTGACAGAAAGCACAGTGCAGGGGGCGTACAACGAGACGGATGCTCTGAAGCAGCCTGGCGAGGACTCTATAGTAACTCAGGAGGGAATGACTGGACGAGGAGCCGCACAGGATGAGAACGAGGAGGTGATGCTGGCTCTTCTCATTCACGAGAAGAGGAGCGGAGCCGGTCCAGGAGGTGCCATGGTCTCCAGACCGACCGTTCCAGCGGCTAACGCCAGCGACTCTGACAGCGATACCAGTGAGTCAGATGAAGACTCGCCGCCTCAGGCTCCAGCCCACACTATGCTCAATCCTACAGCCCCGCGACCGGGAAAACAAGACGACGAAGAGGacgaagatgatgatgatgagttCGAGGAGGTTGGGGACGACCCTGTGGTTATGGTAGGGGGAAGACCTTTCTCTTACAGGGAGGTGAGCCAGAGACCCGAGCTGGTGGAACAGATGAGCGCTCAGGAGAAAGAGGCGTACATTGAAATGGGCCAGAACCTCTTCCAGGACATGTACTTCTGAGTTCATCCTGTCTGTCCGCATCACATTCGTTCTTGCATTTGATTCGTCCTTTGCACAGTCTCAAACGGTGTTGTGCGACATGCCAGAGCTGACAAATGTAGTGTTATATCGTTGATCGTTCTTCTATTTTCTCATCCCTCTGCCATATTCTCATATAAATCTACTCTGGTGCCAATGATACCAAAGTATCACGGTTGTAAACAAGAGTATCGTACATTGGCAAACATGCTCACAGCGCTACCTTTCCGGTTTGTTTGCCGTCTCGCCACATTCAGAGACGTCCAAATGAATAACAGTGTTGCTGCAGTGACCTCTGGGACGGTTTTACTCAAAAGAAAACCCCAAACCGAATGGTTCAGGGGCTTTTCCTCATTTTTGAATGACAGCAAGTGACAAATGTTGTTTTGCTCAAAGCTACAGAGACATTTCTGCATCGTCTTGCTTTCGCATCTATTTCCACAGCTATTTTTCTCAACAGTATTTAGCAGGACTTGCGGTTTGAAAGGAAGGACAAGTGATTTTGTTTTCAGCTGACTGCCTTGACGTGATATTAAATGGAGTTTTGATGAGATATGTTTGTTTAGAGCGTGATTGCTTTCCTTTCACAGCAGAAATgagcactttcttcttctgatCTCTGCCTCAGTGGACATTATTCACTTCTTTTTGTTTATCCATAAGTGGAAAAAgaacgttgttgtttttttttagttcgttagacattttacagtaataaaaagcAGAGTGTAAAAACTTCAA

Function

symbol description
gtf2e1 Predicted to be involved in transcription open complex formation at RNA polymerase II promoter. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be part of transcription factor TFIIE complex. Orthologous to human GTF2E1 (general transcription factor IIE subunit 1).

NR:

description
general transcription factor IIE subunit 1

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K03136 TFIIE1, GTF2E1, TFA1, tfe; transcription initiation factor TFIIE subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249678.1 False 2169 mRNA 0.49 5 11232049 11244430
XM_043249679.1 True 2218 mRNA 0.49 5 11232007 11244430

Neighbor

gene id symbol gene type direction distance location
crygs2 crygs2,LOC107663869,LOC107551958,LOC107733648,LOC107598173,LOC107698534 coding upstream 6174 11224548 ~ 11225833 (+)
tbccd1 tbccd1,LOC107551957,LOC107663868,LOC107733647,LOC107738513,LOC107698532,LOC107598171 coding upstream 9836 11217132 ~ 11222171 (+)
dbr1 dbr1,LOC107733644,LOC107738510,LOC107663903,LOC107598170,LOC107698529,LOC107551939 coding upstream 22426 11205837 ~ 11209581 (+)
kcnh3 kcnh3,LOC107663882,LOC107733652,LOC107551953,LOC107598168,LOC107738522,LOC107698521,LOC108430476,LOC108266388,LOC105016302 coding upstream 39080 11099044 ~ 11192927 (+)
ccnyl1 ccnyl1,LOC107733650,LOC107663902,LOC107698526,LOC107738507 coding upstream 191049 11031448 ~ 11040958 (+)
stxbp5l stxbp5l,LOC107738516,LOC107663865,LOC107675353 coding downstream 19296 11263726 ~ 11372571 (+)
poglut2 kdelc1,LOC107567637,LOC107733631,LOC107675345 coding downstream 128496 11372926 ~ 11379422 (+)
tex30 tex30,LOC107663828,LOC107567637 coding downstream 135440 11379870 ~ 11381952 (+)
nepro si:dkey-22a1.3,LOC107733637 coding downstream 137962 11382392 ~ 11385994 (+)
arhgap15 arhgap15,LOC107673132,LOC107709415,LOC107555858,LOC107563181,LOC107711394,LOC107675340 coding downstream 802044 12046474 ~ 12086508 (+)
G69417 armc8,LOC107733643,LOC107663904,LOC107551954 non-coding upstream 30842 11200651 ~ 11201165 (+)
G69403 NA non-coding upstream 141573 11063601 ~ 11090434 (+)
G69358 NA non-coding upstream 290483 10941308 ~ 10941524 (+)
G69355 NA non-coding upstream 308530 10923149 ~ 10923477 (+)
G69340 LOC107733630,LOC107551942,LOC107663909 non-coding upstream 397325 10833788 ~ 10834682 (+)
G69459 NA non-coding downstream 721 11245151 ~ 11245478 (+)
G69483 NA non-coding downstream 175775 11420205 ~ 11423317 (+)
G69518 NA non-coding downstream 735351 11979781 ~ 12009922 (+)
G69539 NA non-coding downstream 955504 12199934 ~ 12200597 (+)
G69578 NA non-coding downstream 1077821 12322251 ~ 12322532 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other upstream 201598 11021736 ~ 11030409 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other upstream 836777 10328731 ~ 10395230 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other upstream 1057224 10167336 ~ 10174783 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other upstream 1118651 10092350 ~ 10113356 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other upstream 1665010 9443125 ~ 9566997 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other downstream 221174 11465604 ~ 11490149 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other downstream 802069 12046499 ~ 12155804 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other downstream 1190558 12434988 ~ 12452365 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other downstream 1383105 12627535 ~ 12629535 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other downstream 1487868 12732298 ~ 12803408 (+)

Expression


Co-expression Network