ramp1 (ramp1,zgc:91818,LOC107733653,LOC107738500,LOC100007315)


Basic Information

Item Value
gene id ramp1
gene name ramp1,zgc:91818,LOC107733653,LOC107738500,LOC100007315
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10757241 ~ 10781253 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249680.1
GTGAACACGACAGCGTAACTTACAGCGGTTCCCTCACTTCTCCAATTAACTACGTTCACGTTTATTATTAGCCAGCATAAGTTGATGAGCCGCGAGGGAGGTGGCTTCGCGTTTACCGTCGCCGCGAGCGCAGCTCACTCGTTTCAGTAGTGCGCCTGACGCGCGCCGGAGCGCACAGCCGGTCTCTCCACGAGCGACTTCAGAGAGAACTACCGCGCGAACTCACTTCAGCGGCGCGTCTCCGCTTCGTCGCGTCACAATAAAGCGCTGCTTCGCGAAACGCACGGCATGGTGACCGAGAGGAACGGAGGGATTCTCTCTCCTGCGTCTTCAGCGGAGCTTCGGCGCTGAATGAAACCGTCTGCGAAATTAGCTGTCAAAGGCGCAGATGTGCGGAGAGTGGAGAAAGTAGAGCCGTTTAGCGACTATCGACAAACTTCTGCTGCTCTGACTGACATCGACACGTCATGGCATCGGTGTCGTGGAGACACGCGCTCTTCTTCTCGCTTGTTGTGAATCTGTCCGTGCTGGCGACAGCATGCAGCAGTCAGTATGGAAATGCCATTGAGGAGTTCTGCCTGGCCAAGTTCAAGCTGGACATGGAGGTTCTCGATCAGCGCCAGTGGTGCAGCTGGGAGGACACAGTTGAGTCATATGGAGAACTGACCAACTGCACGTTCCTGGTGGCTCTGAAGATGAACTGTTTCTGGCCCAACCGCATGGTGGACGAATTCTTCATCCGGGTGCACAGGCACTACTTCCGTGACTGCTCAATGTCTGGACGGCTGCTTCACGATCCACCCAATCGGATCTTGGGGCCTTTTATCGTGGTGCCCATTCTGGTGACGCTGCTCATGACTGCTCTTGTGGTCTGGAGGAGTAAACGCAGCGAGGGAATCGTATAATCATCTAcgaaaaaaactgaacaataCAGAAGGGGATTTTTCACAGActgcaaacacaaagaaagactTGTTTCTCATCAAGTGGTTGTAAATCCAAACGGTTGTAGTGAACGCTGTCACTCTTATCTGCACACAGATAACATACCAGTCATTTATACagacagaaacatttctttgaGGTAGTTTTCAACTAAGTATTTTGTCATGGCAGTATTCTGTCAGTAAAACTGATCTCCAGTCTGGAGGTCTGGAAGTCATTATCGTGATGACGGATACGTTTCACCTCGGATGGACACACACCAAACTAGGGAGGACACTGTTAATCCCACGAGTTTGCAAACCTTTACCATCTTGTGAACATTGGACACTGAACAATCCCTTTGCGTCACCCATCATCCTCGGTGAATTTCACACTCATAAATGTGCTTTGTGCCAAATGATGacattcattcagtcagtcagtcattaTTAGTGTACTTTTGTTGAATTAAGAAAGACGAGGAAGAAAGGAAGAGGGCTACAACCACGAACATGCCAATGatattcacattattattattattaatcccTAAAATGAACATCACCATCGGATATTGTAAGACACtcaaaaagctgtaaaaaaatcttaaggTCTAAACTGAATGTATCTTTCATACAATAGTCAATCTCACGATGCATTGCTTCATCAAAAAAAAGTATCCAAGATTTTGGAGAGATGTGATCAATTTGCTTCATTTAAGTActgaaagaaatcaataaaaacctttaaattacAATCAAAAATTGACTATTGGACACAATGTGTGGTGTATATAGTGCAGACCAACAACAGCATCTCTGAGAAAACCAACTCTCCGTCTGTCAGTGCAGAGTAAATTCGGCTAAAGACTgcgtctttttgttttaaatcagaatAGAATGCTATTAGGGACAATGTGCTATACTGCGTTGCATTTAACCTTTTACTTGCTTAAAAGTCAAAAGTGTTCGGTTCAGTGTTATCATGAAAAGCCCCAATTGTGTAACTCTCTGCCGAAGAGATAAGACATCTACAGTATATACTGCAGACAACAGACAGTCAGGCGGCTCATCGGGTTCTGGATCAGAGCCGCAGTGCTTTGTGCTAACAGTGGCTATCAGATACTATTAGAAGCACTGAACCAGAAAGGatcactgcatttatttggtgtCTCTCATCTCATGGGCTCTCGTCATAAGGTCATGTCGAGGGAAAATATTGTCTTTCTGTAGCGGAGAGCAACCTACCGGCTAAGAAGCTTGCAGCCTTTTTTGTGGAATAATTCATATATTAGCACTAaaaggatgttttcattcgcaTGGTTCTGCTAATTGCTTTTTAAGCTATATCTGTGTATCTCTGGAGCTCTGTACCCACAGTGAGTGGTTTAAAAGCCTGTAGCGAACTGGACAGTGGCGCAGAGACGGTAGACTTTTCTAATGTCAGCTGAATTTCAAAGCATCTGATTTCTGTTGCCGTTATAATAAAGCCGTTATAATAATTTTCCCTCATTTGAGATTTGCTTTGTAACGCATCATGTGCTGTCAGGAGAACAAAGAGTGACAAAGGTAGCCATGTGGTCTTGAGTCACCAAAATTTAGCTGTTAAATTACAGCAGATCAGATAGAGCATAGTAGTTACTAAACTAGTTTGATGTCTGTTACATGATTTTGATGTCTCTGCATTTTGTAGCAAGAAGGATGTTCAAGTGTTCATGTGCTGTGTTCTTTTTACTTTCAACTTAATTCTgtaatgccattaaaaaaaaaaaaaaagaaattattgtaaataactGCCTGCATCACCAATGCATCACAATTTTATAATGCGAATTTGAAACCTAAATCAGtactccattaaaaaaaaaaaagaaaagacacgaAGGAAAGAACTCAAATG

Function

symbol description
ramp1 Predicted to enable coreceptor activity. Predicted to be involved in several processes, including angiogenesis; protein localization to plasma membrane; and receptor internalization. Predicted to act upstream of or within intracellular protein transport and regulation of G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in cell surface. Orthologous to human RAMP1 (receptor activity modifying protein 1).

NR:

description
receptor activity-modifying protein 1-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K08447 RAMP1; receptor activity modifying protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249680.1 True 2823 mRNA 0.43 3 10757241 10781253

Neighbor

gene id symbol gene type direction distance location
epb41l5 LOC107733640,LOC107663871,LOC107738499,LOC107551945 coding upstream 1356 10729162 ~ 10755885 (+)
ptpn4a LOC107733639,LOC107738498,LOC107700215,LOC107551944,LOC107663857 coding upstream 29153 10689848 ~ 10728088 (+)
tmem177 LOC107663823,LOC107738527,LOC107700213,LOC107579880,LOC107577552,LOC107600419 coding upstream 68453 10687317 ~ 10688788 (+)
pth2ra pth2r,LOC107733633,LOC107663806 coding upstream 87142 10628143 ~ 10670099 (+)
hs6st3b hs6st3b,LOC107555209,LOC107733651,LOC107663930,LOC107600438,LOC107720131,LOC107655503 coding upstream 154750 10558641 ~ 10602491 (+)
LOC122352014 LOC107733623 coding downstream 54835 10836088 ~ 10839687 (+)
LOC122352013 LOC107733623 coding downstream 61187 10842440 ~ 10849801 (+)
klf7b klf7b,klf7,LOC107738504,LOC107598162,LOC107733646,LOC107700220,LOC107663863,LOC107551946 coding downstream 172939 10954192 ~ 10996056 (+)
ccnyl1 ccnyl1,LOC107733650,LOC107663902,LOC107698526,LOC107738507 coding downstream 250195 11031448 ~ 11040958 (+)
kcnh3 kcnh3,LOC107663882,LOC107733652,LOC107551953,LOC107598168,LOC107738522,LOC107698521,LOC108430476,LOC108266388,LOC105016302 coding downstream 317791 11099044 ~ 11192927 (+)
G69109 LOC107555213,LOC107706088,LOC107663820,LOC107720152,LOC107600437,LOC107655505,LOC107655504 non-coding upstream 240909 10515306 ~ 10516332 (+)
G69075 NA non-coding upstream 299155 10449007 ~ 10458086 (+)
G69080 NA non-coding upstream 300080 10448701 ~ 10457161 (+)
LOC122351945 NA non-coding upstream 322099 10423214 ~ 10435142 (+)
G69090 NA non-coding upstream 334988 10422043 ~ 10422253 (+)
G69284 NA non-coding downstream 2212 10783465 ~ 10783702 (+)
G69285 NA non-coding downstream 3109 10784362 ~ 10784599 (+)
G69286 NA non-coding downstream 4923 10786176 ~ 10786462 (+)
LOC122351147 NA non-coding downstream 22607 10803860 ~ 10814619 (+)
G69340 LOC107733630,LOC107551942,LOC107663909 non-coding downstream 52535 10833788 ~ 10834682 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other upstream 362011 10328731 ~ 10395230 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other upstream 582458 10167336 ~ 10174783 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other upstream 643885 10092350 ~ 10113356 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other upstream 1190244 9443125 ~ 9566997 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other upstream 1596420 9156045 ~ 9160821 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other downstream 240483 11021736 ~ 11030409 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other downstream 684351 11465604 ~ 11490149 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other downstream 1265246 12046499 ~ 12155804 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other downstream 1653735 12434988 ~ 12452365 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other downstream 1846282 12627535 ~ 12629535 (+)

Expression


Co-expression Network