LOC122352140


Basic Information

Item Value
gene id LOC122352140
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17117017 ~ 17131427 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249684.1
CGCGCATTTTTGTTGTTATCAAATACATACTGACTGGCCCTGCCTTATGTCTCGGACAGTAATTTACTGTAGTGAAGATGTCCTTGTAAATACTACCTTTACGAACTTTTATACTGTTAGGCCACCTGTAGTACGTTGTAGCGGACTGTTTTCTTCGGCAGAAGCTTACGGGATACAGGTCTCGTCTTAGCTCGGTTTCTCTGCAGACACGCAGCCCTTCCCAGAGGGGGAGAACTGCTCCGCAGCCCAGACGGAATCGAGTGCTGCTCAAAGATTTATCCTCATCTTTTGAATCAACGCTCTCTTTTCCCCTTCGCTCCCTACCTTGACATCTCCGTCCTCTCTGTGGCAATGACAAGAGATTGAGACCTCTTCATTGACCAGTAACTGGGAGAGGAGCTTAACATGAACAGCTGGAGTGTGTATCACCTGGTAGCCCTTTCCTTGCTCTTTGTTCCTGAGTCTAGTGCTGAGTATAATAAAAATGAGTCACCGGAAAGGCGTCAATCCAGGGCCAGCAAGAATGCTGTGAAGAGAGGAGGCATGGAGAACCACGGAGAAcaatataacaGTGCAATATTAGATGTTGACCCGGACcagattgtttttaatattagtaattCACCACATGGTATTATTGTAAGATGGAGGACCCCTGATAATATAATATCACCATATTGTTATGACGCTGAAGTGCAGTACAAGAGCCAGTGTGTCAAAGACTGGAAGGGAGGTCAGAGTATTCAAGTGAGACATCAACACAAGGTGTACAATTTGGACCTGTCCAGTCTCAGCATGAAAACAAATTACGATTTCAGAATAAGAATGAAGATCTGGTGTATAAACAGCAACTGGAGCAAGTGGACCAAAGTGGAAAGTTGGGAAAACAATGAAGGTGTTTGTATGGTAGAAGCATCCACCTACATTTGGGTTTACATTTTGATAATTGTGCTGCCACTAACCACATTTCTTCTAGTCTGTCTCGTGACTCAACAGGGAGTTAGAAGACTGATCTTTCCTGAAGTACCAGATCCCAAacacttcaaaaataaaatcatggaCACTGAACAGTTTCAGTGGTATGGAAACCTTACACATTGGAATGAGGAGTGCTCAACAACAGATATTGAGATCATTTACAAGGGTGAAATTGAAGAGCAACATCAAACTTTGGTAACTGAGCCCATGCACACCCTCCCAGAGCAACATGACAGCACATACCCCATCTACTCCTCTGAAACACCTTGTGAAATCACAGAACTACCGTACTCTCAAAGTGTGATGGGATATATTGCCCTTTAAGACCACAGAGAGGGGCTGATATCATACCCATGAGCCAATTTAAGTCTTTTATAACACATGGGCTAAAACCTTCTCTGCTCGCTAGTGTCTCAGGTTTGTGATCATCATTGTGTGGATGCTTAGCATGGCTCTgttagcccctgctggtagaaTCTGTAACTACACCATCTGGATACAAAAAGCATCTTTCTCCATTAATGGGCATTCAAAATTAGCCACCTATTCTGATGCAACTTAAGTCTTTTACGCAACGTATTTCCAGTGCTCCGGAGTAAGCCAAACAAGTGCCTTTGAGATGAATAGAAAAGATACCTGATATATTTCTCTAGGTATTATCGTTCTCATTGGTTGATCCTAAGGTCTGTGATCAGGATTGTGGTTAAAGCAGGCTAGTGCACAACAAAAATCATTTGAGCACATCAGCTTGTAACAAACAATGTGAGTGCAGTACAATAATTGGACAATGGAGGGCACTCTGACTATCCTAAAGTGTTAAAGAAGAGTTGAGCCATATCAAAGCCAACAAGGAACACACTCTTCACAGCATCACATCCCTCTCTTAAGGGAGGATGTACGTTAATTTGAAGACtgatttaaaagattaatgTGAAACTGCATAATAGATGTGGAGTTTCAGTGTGACGGCGTAACAAAGCCAGGGCAGCAGCCACACACTCAGATCTGTTGTGATTGATGAACTGGAATGGGGGTAAAGAAGAATATAAGCAAACAATCATTAAGAGATAGAAGCAAAAATGAACACCACACAGGTGGATTCACAAAggtaaaaatgtacagtttcaGTCATACCTGTTGCAGTTTAGGAACACTGAccaggcagtttttttttttttttgtatggtaATAGGATTGGCTTCAGAAGTGCGGTCCAAAACAGTGAGACCACACTGAATATTTTCCTACATTTAAACCTGAAAATGTAcaggggaaaaacaaaaaagattgtaagaaataaaatgcaacatgtactaaaattttaatatgtaatatagttatatattccAGTGTACtttttgtcatgcatttttttttcatttaaatagttttattaatcatATATTTGGTAAATATGCAATTAGAAAAAGGTAAAggcatttttacacaaagtttCAGGACCCGTTCTGTGaattctgaaaatgaaatgcattctgtctttttattttgcaaatcaatTTCCCAcctattacatttaaattatttttatgttttgtcgatttctttgcttaaaaattaatgtattttttttactttactggATTGAATAAGAGCTTCATCTTTATGTCCACCAGTGGTGTATTGCTAACTGTCTTTGATACTCAAAACCATTTCTATGGGGAGGATGTGATTAAA

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249684.1 True 2673 mRNA 0.40 9 17117017 17131427

Neighbor

gene id symbol gene type direction distance location
ppp2r3b ppp2r3b,LOC107673721,LOC108426065,LOC107748139,LOC107695472,LOC108266308 coding downstream 162668 16938284 ~ 16954349 (-)
grtp1b grtp1b,LOC107748194,LOC107695480,LOC107673704 coding downstream 214843 16898663 ~ 16902174 (-)
LOC122352097 me3,LOC107748144,LOC107595810,LOC107695468,LOC107756775,LOC108426042,LOC102313335 coding downstream 349832 16761873 ~ 16767185 (-)
LOC122351201 nxpe3,LOC107748146,LOC107673677,LOC107597504,LOC107695470,LOC107756776,LOC107595812 coding downstream 356845 16752003 ~ 16760172 (-)
slc35a5 LOC107748197,LOC107565955,LOC107673679,LOC107756781,LOC107695476 coding downstream 418378 16694754 ~ 16698639 (-)
slc25a6 slc25a6,LOC107597494,LOC108426068,LOC107595824,LOC107695486,LOC107756767,LOC108266970 coding upstream 1043 17132470 ~ 17136795 (-)
asmtl asmtl,LOC107597490,LOC107673687 coding upstream 5714 17137141 ~ 17143357 (-)
p2ry8 p2ry8,LOC107748136,LOC107597492,LOC107673689,LOC107756734,LOC107695481,LOC107595819 coding upstream 13429 17144856 ~ 17151079 (-)
upf3a upf3a,LOC107673688,LOC107756766,LOC107597564,LOC107748176,LOC107695475 coding upstream 20471 17151898 ~ 17161537 (-)
cdc16 cdc16,LOC107673708,LOC107597489,LOC107748135,LOC107595809,LOC107756764,LOC107695467 coding upstream 30516 17161943 ~ 17170414 (-)
G71035 NA non-coding downstream 197703 16917224 ~ 16919314 (-)
G70981 nxpe3,LOC107597504,LOC107748146,LOC107673677,LOC107695470,LOC107756776,LOC107595812 non-coding downstream 249495 16866492 ~ 16867522 (-)
G71006 NA non-coding downstream 250595 16866178 ~ 16866422 (-)
G71005 NA non-coding downstream 251428 16865278 ~ 16865589 (-)
G70991 NA non-coding downstream 287358 16827058 ~ 16829659 (-)
G71117 NA non-coding upstream 81449 17212876 ~ 17297150 (-)
G71131 NA non-coding upstream 207693 17339120 ~ 17339530 (-)
G71134 NA non-coding upstream 209118 17340545 ~ 17340915 (-)
LOC122352115 NA non-coding upstream 212289 17343716 ~ 17351712 (-)
G71149 NA non-coding upstream 460537 17591964 ~ 17592183 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other downstream 227470 16886753 ~ 16889547 (-)
G70986 pou2f1b,LOC107748141 other downstream 293242 16817140 ~ 16823775 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other downstream 370795 16720804 ~ 16746222 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other downstream 1345153 15771421 ~ 15771864 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 1717580 15389218 ~ 15399437 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 104445 17235872 ~ 17255491 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other upstream 232760 17364187 ~ 17521560 (-)
sema5ba sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063 other upstream 1119809 18251236 ~ 18366267 (-)
LOC122352185 NA other upstream 1438328 18569755 ~ 18569882 (-)
ankar ankar,LOC107728908,LOC107660654 other upstream 2588515 19719942 ~ 19731794 (-)

Expression


Co-expression Network