tmeff2a (tmeff2a,tmeff2,LOC107728299,LOC107670719,LOC107675359)


Basic Information

Item Value
gene id tmeff2a
gene name tmeff2a,tmeff2,LOC107728299,LOC107670719,LOC107675359
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13035893 ~ 13090342 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249688.1
TCCGAAGCGGTCTGGAAAGCCGCCGCTCGCCTTCAGTGCGTTATTGTGGTTCGCAGGTACAGAGGAATGGCCCTCCGCGAGACTCTGACAAACTCACGGCTCTCCGCGAGCGCACGGAGTGAGGACCGAGGACAGTCTCTCTAAGCCGCGCCTCAGTGGATGTTGTAACTTCGGCATGTCACTCGAATGggatgtatgatttttttttttgcctcacTTCTGTTTCTTAAAAACACCCCTCGCGTCTTTTTATTCTTGCCTCGCTTTTTGAACATCTCGCTCACCCACTTCCCTCCCGACACCATCCCTCCCCTGTCATCGCACCCGGACCTCTCTCATTCCGCATCTGCACCCTCTCGCTTCGGGCGGATCCTCGCTCTGGTCACCTAGAAACAACTGCTTCATGGGGCACACTCCGTCCGTCGGAAAATGTCCCTGTCTTGGCTTCTAAGCTCACCGGCAAAGTTGACAACACCAGGACCAGGGCTGTCGTTGCGCGTCTGCGAGCAGCGTCGGGGGAACTGAGATGGGTGTCACGGTGGCGGCGGCCCTACACGAGCCCCGAAGTCCGCACCAGTGGAGCCGGATAGTGGGACACTGGGTATGGATTGCAGTCTTGTCCTTTCTAGCCACTTTCCCGGTACAACAACTTGGCGCTTTCCCGTCCTCACTCAGCGACTGTCAGACTCCGACTGGATGGAATTGCTCGGGGGATGATGACCGGGACACAGATCTCTTCCTTTGTGACACCAACACTTGCAAGTTTGACGGCGAGTGTCTCAGGATTGGGGACATAATAACATGTATATGCAACTTCAAGtgcaaCAATGATTATGTTCCTGTGTGTGGCTCCAACAACGAAAACTATGAAAACGAGTGTTTTCTGCGGAGAGATGCCTGCAAACAGCAGACCGAGATCCTGGTGGTCTCTGAAGGATCCTGCCCAGCTGatGCCGGTTCAGGATCAGGAGATGAAGCAGGGAATGAGGGCTCGGCGGAGAATGGACAGAAGGAGACGTCCACCTGTGACATTTGCCAGTTTGGGGCAGAGTGTGATGTGGATGCTGAAGATGTTTGGTGCGTCTGTAACATCGACTGCTCCCACATCAGTTTTAACCCCGTGTGTGCATCAGACGGCCGTTCCTATGACAACCCCTGCCAGGTAAAAGAGGCGTCGTGTCAGCGCCAGGAACGAATCGAAGTCAAGTTCCTGGGTCACTGTCAGGGCGACATGATTACAGGCACCAAAGCAGGAGATGGACAGTACGCCAGGACAGACTACACGGAGGAGAAGCCTGAGGTTTCAGAGGTGGCGAGAGGGCTGTACATCCCCTGCCCTGAGCACTATAAGAACTATTGTGTTCACGGAGACTGTGAATATCCCAACATGCTCTCGACACCATCCTGCAGCTGTCACTCAGGATTCAGCGGCCCACAGTGTGACACTAAGGAGTATAATGTGCTGTACGTGGTGCCTGGCTCTGGAAAGCTCCGCTACGTCCTCATCGCGTCTGTCATTGGGGCTCTGCAGGTGGCCATCATATGTGTAGTGGTGCTGTGTATCACCCGGAAGTGCCCGCGGACCAACAGAATCAACCGACAGAAGCAGAACACAATGCACTACAACTCTGAAAACACCCTGCGCGCCTCCACCCGCCTCATTTGAGCCTGTGAGCAGAGAATCATGGGAAACGTAGTTTGAACAGAGGACTGAAAAGAAGAAACTCGCACTCCGTCCCCTGGAGACACTGCATCCTGCTGGATGATGGGATGGAGGGACGGAGGACAACGGTGCAGATATAACGGAGGACGATGGGTTCTACACACGATGCCTTGCACCTGTGGCACAGGACACAAACAGAGAATTTTAGGACACCATGATAGGACAAGTCCTGTTATTTGGTTATGTATGGGTAATATTTCCAATAGTTAATTTGTTTGTCTTGATGGGGTCCTTTTtctgtaatgtaaataaataatttatatcacaaa
>XM_043249689.1
AGAGCACGTGATCCGAAGCGGTCTGGAAAGCCGCCGCTCGCCTTCAGTGCGTTATTGTGGTTCGCAGGTACAGAGGAATGGCCCTCCGCGAGACTCTGACAAACTCACGGCTCTCCGCGAGCGCACGGAGTGAGGACCGAGGACAGTCTCTCTAAGCCGCGCCTCAGTGGATGTTGTAACTTCGGCATGTCACTCGAATGggatgtatgatttttttttttgcctcacTTCTGTTTCTTAAAAACACCCCTCGCGTCTTTTTATTCTTGCCTCGCTTTTTGAACATCTCGCTCACCCACTTCCCTCCCGACACCATCCCTCCCCTGTCATCGCACCCGGACCTCTCTCATTCCGCATCTGCACCCTCTCGCTTCGGGCGGATCCTCGCTCTGGTCACCTAGAAACAACTGCTTCATGGGGCACACTCCGTCCGTCGGAAAATGTCCCTGTCTTGGCTTCTAAGCTCACCGGCAAAGTTGACAACACCAGGACCAGGGCTGTCGTTGCGCGTCTGCGAGCAGCGTCGGGGGAACTGAGATGGGTGTCACGGTGGCGGCGGCCCTACACGAGCCCCGAAGTCCGCACCAGTGGAGCCGGATAGTGGGACACTGGGTATGGATTGCAGTCTTGTCCTTTCTAGCCACTTTCCCGGTACAACAACTTGGCGCTTTCCCGTCCTCACTCAGCGACTGTCAGACTCCGACTGGATGGAATTGCTCGGGGGATGATGACCGGGACACAGATCTCTTCCTTTGTGACACCAACACTTGCAAGTTTGACGGCGAGTGTCTCAGGATTGGGGACATAATAACATGTATATGCAACTTCAAGtgcaaCAATGATTATGTTCCTGTGTGTGGCTCCAACAACGAAAACTATGAAAACGAGTGTTTTCTGCGGAGAGATGCCTGCAAACAGCAGACCGAGATCCTGGTGGTCTCTGAAGGATCCTGCCCAGCTGatGCCGGTTCAGGATCAGGAGATGAAGGGAATGAGGGCTCGGCGGAGAATGGACAGAAGGAGACGTCCACCTGTGACATTTGCCAGTTTGGGGCAGAGTGTGATGTGGATGCTGAAGATGTTTGGTGCGTCTGTAACATCGACTGCTCCCACATCAGTTTTAACCCCGTGTGTGCATCAGACGGCCGTTCCTATGACAACCCCTGCCAGGTAAAAGAGGCGTCGTGTCAGCGCCAGGAACGAATCGAAGTCAAGTTCCTGGGTCACTGTCAGGGCGACATGATTACAGGCACCAAAGCAGGAGATGGACAGTACGCCAGGACAGACTACACGGAGGAGAAGCCTGAGGTTTCAGAGGTGGCGAGAGGGCTGTACATCCCCTGCCCTGAGCACTATAAGAACTATTGTGTTCACGGAGACTGTGAATATCCCAACATGCTCTCGACACCATCCTGCAGCTGTCACTCAGGATTCAGCGGCCCACAGTGTGACACTAAGGAGTATAATGTGCTGTACGTGGTGCCTGGCTCTGGAAAGCTCCGCTACGTCCTCATCGCGTCTGTCATTGGGGCTCTGCAGGTGGCCATCATATGTGTAGTGGTGCTGTGTATCACCCGGAAGTGCCCGCGGACCAACAGAATCAACCGACAGAAGCAGAACACAATGCACTACAACTCTGAAAACACCCTGCGCGCCTCCACCCGCCTCATTTGAGCCTGTGAGCAGAGAATCATGGGAAACGTAGTTTGAACAGAGGACTGAAAAGAAGAAACTCGCACTCCGTCCCCTGGAGACACTGCATCCTGCTGGATGATGGGATGGAGGGACGGAGGACAACGGTGCAGATATAACGGAGGACGATGGGTTCTACACACGATGCCTTGCACCTGTGGCACAGGACACAAACAGAGAATTTTAGGACACCATGATAGGACAAGTCCTGTTATTTGGTTATGTATGGGTAATATTTCCAATAGTTAATTTGTTTGTCTTGATGGGGTCCTTTTtctgtaatgtaaataaataatttatatcacaaa

Function

symbol description
tmeff2a Predicted to be an extracellular matrix structural constituent. Predicted to be involved in several processes, including basement membrane assembly; cell migration; and substrate adhesion-dependent cell spreading. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of laminin complex. Human ortholog(s) of this gene implicated in prostate cancer and urinary bladder cancer. Orthologous to human TMEFF2 (transmembrane protein with EGF like and two follistatin like domains 2).
tmeff2 Acts upstream of or within negative regulation of cell migration; negative regulation of cellular component organization; and wound healing, spreading of cells. Predicted to be located in extracellular region. Predicted to be active in basement membrane and plasma membrane. Implicated in prostate cancer and urinary bladder cancer. Biomarker of prostate cancer.

NR:

description
PREDICTED: tomoregulin-2

GO: NA

KEGG:

id description
K23608 TMEFF2; tomoregulin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249688.1 False 1992 mRNA 0.53 10 13035904 13090342
XM_043249689.1 True 2000 mRNA 0.53 10 13035893 13090342

Neighbor

gene id symbol gene type direction distance location
LOC122351846 ankrd44,LOC107719801,LOC107659898,LOC107595853 coding upstream 224418 12789290 ~ 12811475 (+)
LOC122351844 sf3b1,LOC107731751,LOC107659892,LOC107719800,LOC107690614,LOC107595847,LOC107569635 coding upstream 248456 12777570 ~ 12787437 (+)
LOC122352187 NA coding upstream 304931 12730836 ~ 12730962 (+)
dnah7 dnah7 coding upstream 416471 12562459 ~ 12619422 (+)
rubcnl rubcnl,LOC107709411,LOC107673128 coding upstream 475499 12554613 ~ 12560394 (+)
cavin2a sdpra,LOC107728296,LOC107670717,LOC107555844,LOC107675358,LOC107601077,LOC107718373 coding downstream 3810 13094152 ~ 13106211 (+)
trnas-cga_5 NA coding downstream 18073 13108415 ~ 13108496 (+)
nabp1a nabp1a,nabp1,LOC107728291,LOC107670711,LOC107718374,LOC107555843 coding downstream 18875 13109217 ~ 13112949 (+)
c9h2orf69 zgc:153521,LOC107718378,LOC107675339,LOC107601069,LOC107555833 coding downstream 27937 13118279 ~ 13121043 (+)
tyw5 tyw5,LOC107725219,LOC107728297 coding downstream 86271 13176613 ~ 13179387 (+)
G69723 NA non-coding upstream 195742 12837719 ~ 12840151 (+)
G69718 NA non-coding upstream 262043 12773334 ~ 12773850 (+)
G69706 NA non-coding upstream 311053 12665012 ~ 12724840 (+)
G69659 LOC107709425,LOC107724026 non-coding upstream 509020 12518289 ~ 12526873 (+)
G69625 NA non-coding upstream 578395 12457264 ~ 12457498 (+)
G69783 NA non-coding downstream 15938 13106280 ~ 13106757 (+)
G69789 NA non-coding downstream 17253 13107595 ~ 13107832 (+)
G69796 stk17b non-coding downstream 39756 13130098 ~ 13133839 (+)
G69985 NA non-coding downstream 425347 13515689 ~ 13518237 (+)
G70021 NA non-coding downstream 578764 13669106 ~ 13669444 (+)
G69755 NA other upstream 49915 12984868 ~ 12985978 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other upstream 232485 12732298 ~ 12803408 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other upstream 406358 12627535 ~ 12629535 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other upstream 583528 12434988 ~ 12452365 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other upstream 880089 12046499 ~ 12155804 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other downstream 199351 13289693 ~ 13304591 (+)
ccnt2a ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362 other downstream 585821 13676163 ~ 13684835 (+)
LOC122351767 NA other downstream 1496740 14587082 ~ 14589439 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other downstream 2310785 15401127 ~ 15425361 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other downstream 2617859 15708201 ~ 15715901 (+)

Expression


Co-expression Network