zgc:92380 (zgc:92380,LOC107656510,LOC107564128,LOC107688951,LOC107739632)


Basic Information

Item Value
gene id zgc:92380
gene name zgc:92380,LOC107656510,LOC107564128,LOC107688951,LOC107739632
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 24789506 ~ 24797054 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249720.1
GTAAAACAGCAGTCCGCTTCTCACAAGCACACTCAAAGGCACCTCCAACCGCAACCATGTCGTTCAAGAGCCCTTCCAGGAGTTTCTCCAGCTCAAGTCTGTCTGGCAGCATGGGGTCGAGGGCCAGTCTGTTCGGGGCCATTTCCCCGTCTGCCATAGGGAACCTGGCGAACACACTGCGTCCGATGGTGCAGATCAACAGCAgcgcttttgcagcagctgacGACAAAGAGACCATGAAGGGCCTGAATGACCGTCTGGCGGGGTATCTGTCAAAGGTTCGACTCCTGGAGGACTCCAACAATCAGCTGGAGGCGCAAATCAAAGAGGCCCTGATGAGAAAAGGAGCCGAGAGCGGCAGAGACTGGAGCGCCTATGAGAAGATCGTCGCGGATCTGAGAAACCAGATCCAGGAAATGACTATGGACAATGCCAGACTTTTTCTGCAGATAGACAATGCGAGGCTGGCTGCCGACGATTTCAAAATCAAGTTTGAGTCGGAGCAGGCCATGAGGCAAGGGGTGGAGCAGGATCTGGCGCGTCTCCGTAAGATGCTGGACGACACTTACATGGGCCGCATGCAGCTGGAGAGCCAGATCGAGTCTATGAGAGAAGAGCTGGCGTTCCTCAAGAAGAGCCACGACGAGGACGTTGCCAACCTGAAGAGCCAGATCAGCGACTCCCAAGTCAATGTGCAAATGGAGACGAAAAACAACGCAGACCTCAACGAGGCCATTAATAACATCCGCACGCAATACGAGAGAGCCGCGCAGAAGAGCCGCGAGGATACCGAAGCCTGGTATCAAAACAAATTTGACAACATCACAGCTGAGGTGACTCAGAACACAGAAGCTCTGCAGGCAGGAAAGACGGAGCTGAACGAGCTGCGCAGGCAGAAACAATCGCTAGAAATTGACCTGCAGGCTCTGCACAACATGATTCGTTCACTCGAGGACTCTCTGCGTGAAACGGAGGCACGTTACGCTCACGAAGTCACGGGGTACAACTCTCGAATCCTGCAGCTGGAAGGAGAGCTGGGACAGGTGCGGGCGCAGGTGGAGCGGCAGGCGGCCGAGTACGAGGCCCTGCTCAACCTCAAGACCAAACTGGAGGCAGAGATCGCCACCTATCACCGTCTCCTGGAGGGTGTCGTTGACGACAAGGAGGACAAAAACAGAGAGGATTTTTCTTTAGAGCAGGCGTTGTATGCAGctcctcctcctcctcctcctacgTCCGTCGGACTTAAGAAAgccatcatcatcacacaagaaATAGTGGACGGAGAAGTGGTCTCTCAAAGTGAACTTGAGCAAAATCTTATTATTCACAATGACCTGGAAGATTCTGGGGAGGATCAGAAGTTGACAGAACAACTGGAGCTAGCGTTGGAAGAggcaaaagcagaaaaacaggAGTTAGCAGAACAACAGAAGCTAGCGGTGGAAGAGGTGAAGGCAGAAGAGAGAGTGGGACAACAGCTGGAGTTAACAGTGGTgaaagcagaagaagaaaaagtagAAGATCAGCTGGAGTTGGTGGTGGAAAAGGTgaaagcagaagaagaaaaaataacagAACAGCTGGAGTTGGTGGTGGAAAAGGTgaaagcagaagaagaaaaaatagcaGACCAGCTGGAGTTGGTGGTGGAAAATGTgaaagcagaagaagaaaaaatagcaGACCAGCTGGAGTTGGTGGTGGAAAAGgtgaaagcagaggaagagTTAACAAAACAACTGCCATTAGTGAAGGAAGGTGAGTTAGTAGGCGATAGAGAAGTCACATgctgaggatgaggaggaggaagaag

Function

symbol description
zgc:92380 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in several structures, including digestive system; epidermis; hatching gland; polster; and sensory system.

NR:

description
keratin, type I cytoskeletal 18-like isoform X2

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249720.1 True 1816 mRNA 0.52 8 24789506 24797054

Neighbor

gene id symbol gene type direction distance location
LOC122351587 NA coding downstream 3269 24784903 ~ 24786237 (-)
LOC122351585 LOC107656512,LOC107744835,LOC107596607,LOC107739743,LOC107688961,LOC107564147 coding downstream 17247 24768285 ~ 24772259 (-)
cxcr2 LOC107656519,LOC107596606,LOC107739752,LOC107688962,LOC107564148,LOC107731305 coding downstream 24651 24761541 ~ 24764855 (-)
mettl5 mettl5,LOC107744838,LOC107739664 coding downstream 30849 24754888 ~ 24758657 (-)
ccdc173 ccdc173,LOC107596564,LOC107677915,LOC107564134,LOC107577048,LOC107744830 coding downstream 55724 24728368 ~ 24733782 (-)
gpbar1 LOC107656509,LOC107564146,LOC107688960,LOC107739693,LOC107596586 coding upstream 6569 24803623 ~ 24807781 (-)
LOC122351834 LOC107572957,LOC107663596,LOC107573769,LOC107728255,LOC107661170,LOC108265697 coding upstream 662841 25459895 ~ 25462849 (-)
LOC122352035 rbms1,LOC107675130,LOC107730583,LOC107663836,LOC107722911 coding upstream 1065699 25862753 ~ 25919696 (-)
gcgb gcgb,gcg,LOC107730589,LOC107677918,LOC107722905,LOC107674768,LOC105907977 coding upstream 1268158 26065212 ~ 26067013 (-)
LOC122351282 fap,LOC107563829,LOC107722901,LOC107677917,LOC107561562 coding upstream 1271184 26068238 ~ 26080787 (-)
G73175 NA non-coding downstream 10851 24776160 ~ 24778655 (-)
G73160 NA non-coding downstream 43568 24739326 ~ 24745938 (-)
G73084 rdh1,LOC107566765,LOC107744825,LOC107674762,LOC106581784 non-coding downstream 218394 24564881 ~ 24571112 (-)
G73077 NA non-coding downstream 268198 24513094 ~ 24521308 (-)
G72984 NA non-coding downstream 505341 24281991 ~ 24284165 (-)
G73179 NA non-coding upstream 3984 24801038 ~ 24801377 (-)
LOC122351686 NA non-coding upstream 15262 24812316 ~ 24821062 (-)
G73186 NA non-coding upstream 42552 24839606 ~ 24839961 (-)
LOC122351187 NA non-coding upstream 295582 25092636 ~ 25094799 (-)
G73302 NA non-coding upstream 554009 25351063 ~ 25389815 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other downstream 508798 24220522 ~ 24280708 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other downstream 829181 23943985 ~ 23960325 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other downstream 858177 23930207 ~ 23931329 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other downstream 2278199 22297007 ~ 22511307 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 2565839 22171463 ~ 22223667 (-)
G73201 NA other upstream 230531 25027585 ~ 25030965 (-)
G73301 NA other upstream 551724 25348778 ~ 25349640 (-)
G73300 LOC107577510,LOC107663597,LOC107729051,LOC107728259,LOC107661178 other upstream 659360 25456414 ~ 25458742 (-)
G73347 NA other upstream 993463 25790517 ~ 25793056 (-)
LOC122351758 LOC107663860,LOC107722919,LOC107561565,LOC107585695,LOC107675138 other upstream 997029 25794083 ~ 25853303 (-)

Expression


Co-expression Network