ecrg4a (ecrg4a,LOC107602890,LOC107688728,LOC107716776,LOC107721563)


Basic Information

Item Value
gene id ecrg4a
gene name ecrg4a,LOC107602890,LOC107688728,LOC107716776,LOC107721563
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6883488 ~ 6888374 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249721.1
CCGTCCGTCTAGTTTGAACTTGATATTAACGCTGAATGCTGTTACCTCAACAGCATTCAGCGTTAATATCAAGTTGTTGAATTGCTcattaatgttgttaactaatgaaccttactgtgaagtgttaccaacacgatgttttacatttgtatctgtttatttgttcatattcACTAAATCAGCAATTTTCTGTTGCTGTTCAAGACCAAGGTCAGTGGACATTGATTTTGCCATTGATGagttattattacagttattaacACATGTGAAAATTGACTCAGAATTAAACAAATAGCTGAAACCTGACTCTTTATAGCAGTTTTTCCCGGtgattaatgaatgaaaaaaaaaaactaaatatgtatGTTTGCCTGTCCAAAGAAAAATGCTAAACAAAACGCATCATATTTTGCGAGAAAGCATGAATCGTACACTTTTTCCTGGAATAAGAACCCCAAATTTTGTAAGAAACGTAGGTCTCTTTCAGCACAAATAATGCTGGAGTagattttaccaaaaaaaatacagtttcactCTTTGTACCTggaattttttgtttaatttagtgcgtgcttgccatttctttgtaatttttcCCAGTAATTTTCGAAGTGCAGTAAATCATACGCCATACATCTTTATAAAATAACTCAACATGAGGAGGTTTAAACAATTCAAAGCAGTATCATGTTTCACTACGAAAAGCCTGCAACCCCATTTAATGTGGAAAAATACTAACGGTGCACATGTGCAAGTGCTTAAATGTACAAGGAGACAGGGTCTTTTTGTCAGCCGACGTAGTTTACAGTAATTTGCCAGCTGCAATTTCCGTTGAGAGTGTTTGCGTGGGCTTCCCTTGggctctctcctcctctctcctcctcctctctctgagCTTGTTTTGCAGATCGCTGTGCAAATCGAAAGAGAAGACAACAAGAAATCATGGTTTCTGAAAAGTTTTACTTGCGCTTGCTCGCCTTTGTGACCTTGTTGACTGTACTGGCACTCTCGgATGTCGCAAGTGAGAGCACTCTGGAAAAACTCTTGATGAAAAAAGTGGACGGCGAGGTAAAGCCAGCAGCAGCTGTGGCTGTGACTCCCTCCAGGGCCAAACAGTTCCTGGCCTCCCTTAAAAGACCCAAGAGGAACCTGTGGGACCGGAGCCGCCCTGACGTTCAGCAGTGGATCCAGCAGTTCATGTACATGGGCTTCGATGAAGCAAGACTTGAAACGGATCTGGCCTACTGGCTGGACCACTACCAATCCAGTGACCAGGGTCGCCAGCATCACTACGATGAAAACTCTCCCATGGGGCCTCGCAGCGCTGGCTCTTACAGGCACGGGGCCAATGTCAACTATGACTACTACTAAACACCAAAGGCATAACCACTTTGATTTACCAGAGTGACAGCAGCTTGATCCTTCCTTCTGTAGCTTGTACTTCcttttgcaaatgaaaataacacagaaaatgGAAAGTCAATTTTAATAGTTTACTTGAAATTAACAAAAAcgtataaaaagtaaataaaataacctagggtgtttgtttttgaaataaatgaacaaaaggaCATATAAAAGGACAGATTAAATTGAGCAAAGAAGGCAGTTAATAAATGtctacaaaatatattttgaactttctgtttataaaacttaaaattgaCCAGAAATCTTTCTTGAACAACAACTGTTTGAATGGTTTCTGGAGGATCACGtgagactgaagactggagtaatgatgctgaagatTCAGTTTTGTGTCTGACAAATTTATGAAATTTTCAGGGCTTTGATTTCCGCAAGGAGGATatgtaactaaataaaaataaaattcacagtTTAA
>XM_043249722.1
GCAGTCGGCCATGTTCTCTCGCTGGCAACGTTTTATTTCGTACGAACTGCGTTTGgtgataaaatgttaaaacacgAGTTTCACGAGTAcgattatttcatttattatgtcaTCCTGGTATCGCGTTTCATACAAACGCAGCGGCTGCAACTATTGTTTTGTAATCTGTGGACTAACAAACGGCAATTTTCTGTTGCTGTTCAAGACCAAGGTCAGTGGACATTGATTTTGCCATTGATGagttattattacagttattaacACATGTGAAAATTGACTCAGAATTAAACAAATAGCTGAAACCTGACTCTTTATAGCAGTTTTTCCCGGtgattaatgaatgaaaaaaaaaaactaaatatgtatGTTTGCCTGTCCAAAGAAAAATGCTAAACAAAACGCATCATATTTTGCGAGAAAGCATGAATCGTACACTTTTTCCTGGAATAAGAACCCCAAATTTTGTAAGAAACGTAGGTCTCTTTCAGCACAAATAATGCTGGAGTagattttaccaaaaaaaatacagtttcactCTTTGTACCTggaattttttgtttaatttagtgcgtgcttgccatttctttgtaatttttcCCAGTAATTTTCGAAGTGCAGTAAATCATACGCCATACATCTTTATAAAATAACTCAACATGAGGAGGTTTAAACAATTCAAAGCAGTATCATGTTTCACTACGAAAAGCCTGCAACCCCATTTAATGTGGAAAAATACTAACGGTGCACATGTGCAAGTGCTTAAATGTACAAGGAGACAGGGTCTTTTTGTCAGCCGACGTAGTTTACAGTAATTTGCCAGCTGCAATTTCCGTTGAGAGTGTTTGCGTGGGCTTCCCTTGggctctctcctcctctctcctcctcctctctctgagCTTGTTTTGCAGATCGCTGTGCAAATCGAAAGAGAAGACAACAAGAAATCATGGTTTCTGAAAAGTTTTACTTGCGCTTGCTCGCCTTTGTGACCTTGTTGACTGTACTGGCACTCTCGgATGTCGCAAGTGAGAGCACTCTGGAAAAACTCTTGATGAAAAAAGTGGACGGCGAGGTAAAGCCAGCAGCAGCTGTGGCTGTGACTCCCTCCAGGGCCAAACAGTTCCTGGCCTCCCTTAAAAGACCCAAGAGGAACCTGTGGGACCGGAGCCGCCCTGACGTTCAGCAGTGGATCCAGCAGTTCATGTACATGGGCTTCGATGAAGCAAGACTTGAAACGGATCTGGCCTACTGGCTGGACCACTACCAATCCAGTGACCAGGGTCGCCAGCATCACTACGATGAAAACTCTCCCATGGGGCCTCGCAGCGCTGGCTCTTACAGGCACGGGGCCAATGTCAACTATGACTACTACTAAACACCAAAGGCATAACCACTTTGATTTACCAGAGTGACAGCAGCTTGATCCTTCCTTCTGTAGCTTGTACTTCcttttgcaaatgaaaataacacagaaaatgGAAAGTCAATTTTAATAGTTTACTTGAAATTAACAAAAAcgtataaaaagtaaataaaataacctagggtgtttgtttttgaaataaatgaacaaaaggaCATATAAAAGGACAGATTAAATTGAGCAAAGAAGGCAGTTAATAAATGtctacaaaatatattttgaactttctgtttataaaacttaaaattgaCCAGAAATCTTTCTTGAACAACAACTGTTTGAATGGTTTCTGGAGGATCACGtgagactgaagactggagtaatgatgctgaagatTCAGTTTTGTGTCTGACAAATTTATGAAATTTTCAGGGCTTTGATTTCCGCAAGGAGGATatgtaactaaataaaaataaaattcacagtTTAA

Function

symbol description
ecrg4a Acts upstream of or within central nervous system development and regulation of cell population proliferation. Predicted to be located in apical plasma membrane and cytoplasm. Predicted to be active in extracellular space. Is expressed in epidermis; pectoral fin; and pharyngeal arch. Orthologous to human ECRG4 (ECRG4 augurin precursor).

NR:

description
ORF2 protein

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0007417 central nervous system development biological_process
GO:0030133 transport vesicle cellular_component
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249721.1 False 1852 mRNA 0.39 4 6883488 6888101
XM_043249722.1 True 1853 mRNA 0.40 5 6883488 6888374

Neighbor

gene id symbol gene type direction distance location
tmtops2b tmtops2b,LOC107602912,LOC107688724,LOC107716802,LOC107721599,LOC106586769 coding downstream 51234 6807329 ~ 6832254 (-)
si:ch73-390b10.2 si:ch73-390b10.2,LOC107688773,LOC107551072,LOC107692818,LOC108266990 coding downstream 156690 6719754 ~ 6726798 (-)
LOC122351204 LOC107716777,LOC107688771,LOC100331465,LOC107602892,LOC107702999 coding downstream 175280 6686218 ~ 6708208 (-)
LOC122352171 fam155a,LOC107716804,LOC107721616,LOC107570097,LOC107702989,LOC107688721,LOC101886421,LOC107735187 coding downstream 284290 6501409 ~ 6599198 (-)
abhd13 abhd13,LOC107570096,LOC107702974,LOC107688719,LOC107551070 coding downstream 385284 6492609 ~ 6498204 (-)
nck2a nck2a,LOC107602910,LOC107688727,LOC107721610,LOC107676443,LOC107551075,LOC107716798 coding upstream 8103 6896477 ~ 6943442 (-)
c9h2orf49 LOC107716774,LOC107688774,LOC107721580,LOC107676461,LOC107551065 coding upstream 76855 6965229 ~ 6969207 (-)
gpr45 si:dkeyp-118h3.5,gpr45,LOC107602888,LOC107688775,LOC107716773,LOC107676540,LOC107721584,LOC107551066 coding upstream 81443 6969817 ~ 6974908 (-)
pou3f3a pou3f3a,pou3f3,LOC107716796,LOC107688731,LOC107602909,LOC107721578,LOC107676544 coding upstream 99349 6987723 ~ 6990768 (-)
tmem182a tmem182,tmem182a,LOC107721587,LOC107551067,LOC107602887,LOC107716770,LOC107676521 coding upstream 205529 7093903 ~ 7097792 (-)
G68357 NA non-coding downstream 512 6882585 ~ 6882976 (-)
G68328 st6gal2a,LOC107676409,LOC107721598,LOC107688722,LOC107551073,LOC107602911,LOC107716800 non-coding downstream 70473 6809848 ~ 6813015 (-)
G68333 LOC107721598,LOC107716800,LOC107688722,LOC107579700 non-coding downstream 89113 6793402 ~ 6794375 (-)
LOC122351577 NA non-coding downstream 106514 6775074 ~ 6776974 (-)
G68270 LOC107716762,LOC107688772,LOC107602882,LOC107721583 non-coding downstream 165345 6715996 ~ 6718143 (-)
LOC122351994 NA non-coding upstream 4278 6892652 ~ 6895397 (-)
LOC122352164 NA non-coding upstream 94304 6982678 ~ 7035361 (-)
G68473 NA non-coding upstream 439455 7327829 ~ 7341494 (-)
G68489 NA non-coding upstream 492916 7381290 ~ 7381508 (-)
G68555 nrp2b,LOC107688766,LOC107688751,LOC107752901 non-coding upstream 926875 7815249 ~ 7818832 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 622419 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 783576 6099071 ~ 6099912 (-)
G68124 dip2a,LOC107549743,LOC107752588,LOC107720936 other downstream 839563 6043275 ~ 6043925 (-)
LOC122351463 LOC107689507,LOC107549921,LOC107670332,LOC107752589,LOC107549740 other downstream 952352 5912855 ~ 5931136 (-)
LOC122351915 LOC108191338,LOC101883771,LOC101885620 other downstream 1483608 5396865 ~ 5399880 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other upstream 182611 7070985 ~ 7153954 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other upstream 1126075 8014449 ~ 8024672 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other upstream 1188094 8076468 ~ 8094847 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 3019814 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 3545133 10433507 ~ 10443619 (-)

Expression


Co-expression Network