tnfsf11 (tnfsf11,LOC107549913,LOC107688674,LOC107713713,LOC107561312)



Basic Information


Item Value
gene id tnfsf11
gene name tnfsf11,LOC107549913,LOC107688674,LOC107713713,LOC107561312
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3404812 ~ 3411893 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043249723.1
aaggaaacatgaaAAAGCGAGATCATCTGTGCCTATTATCTGATTGGCTGTCTCCGAAGCCAACAGCATTGCCCACCCACATGTTTATATGAATCGTTGATCATTTGTCGAGTCCTCCCACTGAGAGAGGATCTGTGCCGCGATCGAGCGCTCATGGCAGCTAATGATTATCGCGCTTACCTGCGGAATCATATCGACATGGAAGAGGCTCCGGGGCGCGCCGCGCACACGGGACCCACGCACAGAGCGCTCATATTCGGCACGCTCGCTGTCATGGGACTGCTGCAGGTCGCGTCGAGTGTGGCGATCTTGTTGCACTTAACCGGTTATCTGCGAGAGGTCGACCTTGCCTCAGCCCAGCAGAGTCCTAATGAGgaaatgCACAGTGAAACCTTAATAGCTGATCCTGCCTGTAAAAGTTTTAAGGAGAAGAATCAGAAATGTCGACTAAAAAAGGACACGCGTATGCCATTAGCTCACCTCCCTATCAAGACGCCCACTAATTTTTCAGCCAAAAATCGAAATGACTTAACCATGATCACCTGGGATGAATCTCAAGGGCTGAAATATAAGACGAGACACAACGCCGGACGAATTCTAGTGGAAGAAGCTGGCTATTATTATGTATACGCCAAGACCTGCTTTCGGTACGCTGAGGATCACGACTCTAGCAAAGAGGACGTCAGCAATTTACAGTTGTTTCAATACATTTATCACGAGAAGCACACGCAGTCTGTAATTACACCTATTCTGCTTACAAAAAGCGGCGGCACTCTGCAGTGGAACATCGCCAAGTTTAACATGTACTGCGTGGAGCAGGGCAGAAGCATCCAACTGAGTAATGCCGACGGTATTTATGTCAACGTATCCAATGCATGGCTACTGGACCCAGCAGCTGACGGGACGTATTTCGGAGCTTTTAAGATAAGCAATTGATTTGCATCGTTTTTGCTACTGAACATGTTAATGCACATTTTGCAACCTTGCAGACCTTTTTTAAAGTGACCATGAACCACTGAGCACTTGTTTTTGATCACTGACTTCTGATTTTTGTTCAATATAGATGACTTTTAAGAGCACATTATAACTTTGAACACTTCCTAATTGTGCCATTGAAGCTCTTAAGTACCAGCACTAGAAAACCAAGAACGGACTCAGGcctctgtctgtgttttgtagTTAAGTACCAATACTGGTGCCATAATGGGGTGAAGGTTAGGATGATTCCAACGATCAGAGAGTTGGCCCGACGCAATCCCAGGGTCGCAATTTCAACGGAGGCCGAGGGACAAAGTTACCCATGCTGGCGGCTATCAGTTCAAAAATGGTACccatacttttaaaatgctcCAAAAGTCAACAAGCCACGAATCGCAGTGGTGGAAAGATGCTGGACAGACCTAGTAAAGTACGCCAAACGGTAGTCTGCTGTGACCTTCACAACAGAGGAACTAAGTGCTCGAATTTACTCCGTATGAAATTCTGGttcactaaaatgttttataaatgcaatagcACATTTGCAGCCTTAGTGATGTAATGTTAGCAGTTAGCACACCAAAAAGTAACTGCCTTGAGATAGTAATAAAAGATGACATATCAGTGCATCCCTAGTTAATGAATCATTACATTTACCAAGacataaaatagttaaaataccATGAAATGTTTCATTCTAGCAAGCATGTTTGAGTCGGACTTTGTAAAAATGAGAAGATGCAGAATCCGTCAAAGACAACTGAATTGTGCCAAACCGGTGGATAGTCGCTTACAATTTCACCCGTTTTACTGATTGGTGAATTTCACTGTTGGACATTTTAGAGCtgcccttttgtttttttcaaatttcttgAACAAAACGCATACAAGCATTCAACAAAAATCGAGGCAGCTGGACTGTCTTTGACTCGGTGTGACAAGCCATGTGCGGAACCAAACTGAGTTTGGTTTgctctaatttaatttttgttctttttttaatgcactaagtgtatttatttattttctatgatGACAGAACGTTTGCCAAATGTTCTGTCTGTTGTACAGTTTTGtagtgtatataattttataattgcCTTTATTACATTCTTAAAGAGGTTTTTGGATGAAGGGCATTGACTTTAGGTCAGTTATACATGCGCTTTTGTCCCAGGCACAGGGCTCCTGTTTAAAGCATAAATGGATTAGTTTCTCACTAagaaactttatatttaagtaCAATTCATTTGACAATTCTGTGTGCAAATGTTTGTGGACAGCAGAATATAATGGTGCCATTGCCAACCCAAAGCGGGCCAAAAAAGGCTTGCGGCCTTAAAGTCTAATATTTGTTCTTCATATGTTAgcaaaagttttgtttaattatgtttatttatactattcTGCCTAATaaagatactttttttaaa

Function


symbol description
tnfsf11 Predicted to enable tumor necrosis factor receptor binding activity. Acts upstream of or within response to mechanical stimulus. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head and scale. Human ortholog(s) of this gene implicated in autosomal recessive osteopetrosis 2 and osteoporosis. Orthologous to human TNFSF11 (TNF superfamily member 11).

NR:

description
tumor necrosis factor ligand superfamily member 11-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043249723.1 True 2411 mRNA 0.42 4 3404812 3411893
Loading

Neighbor


gene id symbol gene type direction distance location
LOC122351418 dnajc15 coding downstream 41212 3146575 ~ 3363600 (-)
LOC122351399 enox1,LOC107549911,LOC107661308,LOC107561323,LOC107713727,LOC107688647 coding downstream 83122 3287934 ~ 3321690 (-)
lacc1 lacc1,LOC107551973,LOC107748901,LOC107561313,LOC107688676,LOC107713702 coding downstream 351575 3045802 ~ 3053237 (-)
gtf2f2b gtf2f2b,gtf2f2,LOC107661326,LOC107748886,LOC108267015,LOC103042992,LOC107691617 coding downstream 430902 2957444 ~ 2973910 (-)
chmp2ba chmp2ba,chmp2b,LOC107661322,LOC107551976,LOC107688654,LOC107561317,LOC107713700 coding downstream 485784 2909071 ~ 2919028 (-)
akap11 akap11,LOC107549933,LOC107713731 coding upstream 7168 3419061 ~ 3436944 (-)
rgcc rgcc,LOC107664012,LOC107549932,LOC107713737 coding upstream 189780 3601673 ~ 3606428 (-)
zgc:101559 zgc:101559,LOC107663997,LOC107749038,LOC107713736,LOC108435193,LOC108232329,LOC106527128 coding upstream 195593 3607486 ~ 3610384 (-)
kbtbd7 kbtbd7,LOC107549928,LOC107713735,LOC107664000,LOC107549759,LOC107670891 coding upstream 198563 3610456 ~ 3614044 (-)
wu:fc50b12 LOC107549762,LOC108232414 coding upstream 202625 3614518 ~ 3616199 (-)
G67384 NA non-coding downstream 16627 3387931 ~ 3388185 (-)
G67383 NA non-coding downstream 19602 3384867 ~ 3385210 (-)
LOC122351420 NA non-coding downstream 158915 3245369 ~ 3245897 (-)
G67377 si:ch73-63e15.2,LOC107669818,LOC107592676,LOC107719621,LOC107655177 non-coding downstream 165227 3238663 ~ 3239585 (-)
G67288 tsc22d1,LOC107713726,LOC107551985 non-coding downstream 388299 3015213 ~ 3016513 (-)
G67475 vwa8 non-coding upstream 168949 3580842 ~ 3581209 (-)
G67490 mycbp2,LOC107749028 non-coding upstream 230554 3642447 ~ 3671076 (-)
G67491 NA non-coding upstream 260634 3672527 ~ 3742733 (-)
G67537 NA non-coding upstream 417125 3829018 ~ 3829643 (-)
G67581 NA non-coding upstream 533426 3945319 ~ 3946905 (-)
G67358 gpx4a other downstream 210320 3189847 ~ 3194492 (-)
serp2 NA other downstream 359505 3017043 ~ 3045307 (-)
LOC122352064 galnt13,galnt1,LOC107671291,LOC107566748,LOC106586166,LOC107657719,LOC107687813,LOC107723435,LOC107706221,LOC107593713 other downstream 565858 2807924 ~ 2838954 (-)
LOC122352168 galnt13,LOC107657405,LOC107566748,LOC107671291,LOC107559530,LOC107745272 other downstream 606218 2763420 ~ 2798594 (-)
G67204 NA other downstream 775306 2627323 ~ 2629506 (-)
dgkh dgkh,LOC107713732,LOC107549907 other upstream 25863 3437756 ~ 3507292 (-)
G67668 NA other upstream 708570 4120463 ~ 4122103 (-)
wipf1a LOC107657348,LOC107600727 other upstream 730397 4142290 ~ 4150239 (-)
pde11a pde11a,LOC107657382,LOC107671328 other upstream 1203949 4615842 ~ 4666654 (-)
LOC122351499 LOC107670334,LOC107747232 other upstream 1380531 4792424 ~ 4822965 (-)

Expression


tnfsf11(tnfsf11,LOC107549913,LOC107688674,LOC107713713,LOC107561312) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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tnfsf11(tnfsf11,LOC107549913,LOC107688674,LOC107713713,LOC107561312) Expression in each Bioproject

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tnfsf11(tnfsf11,LOC107549913,LOC107688674,LOC107713713,LOC107561312) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
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Co-expression Network