uchl3 (uchl3,LOC107668893,LOC107658267)


Basic Information

Item Value
gene id uchl3
gene name uchl3,LOC107668893,LOC107658267
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14213225 ~ 14217247 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249724.1
GCAGAGTTCACGCACCCGCGCACACATATTCCATTGAACTTCCTTCTCAGCTGTCAAAGCGTTTACACACCATTGCTCGAAGTAgcaatatcattttttatttaggatATCAGACAGGGCTTAATCTGAGATGGAGGGCCAGCGCTGGTTACCACTGGAAGCCAACCCAGAGGTTATGAACCAATTTTTACGGCAACTTGGCTTGGTACCCACCTGGCAGTTTGGGGATGTGTACGGTTTGGAAGCTGAAGTTCTCAGTTTGGTGCCAAGGCCTGTTTGCGCTGTACTTTTGCTCTTCCCTATAACAGAGAAGTATGAAACTTTTAGACAGGAGGAAGAGTCAAAAATTAAGGCCCAAGGACAAGAGGTGTCCTCAGATGTGTACTTCATGAAACAAACCATCGGCAATGCTTGTGGTACAATAGGGCTGATTCATGCTGTCGCAAATAATCAGAGACATCTGGAGTTTGAGCCCAATTCACCGCTTAAGGCATTTTTACTGCAGTCTACAAAAATGAGCCCAGAAGAAAAGGCAGCGTTCCTTGAAAAAGATGAGAGTATCCGAGTAACACACGAGTCAAGTGCTCAGGAAGGACAAACGGAGGCTCCAAGTTTAGACGAAAAAGTggatttgcattttattgcctTTGTAAACGTTGAGGGTCATCTATATGAACTGGATGGACGCAAGCCTTTTCCAATTGTTCATGGGAAAACCACAGAGGACACATTTCTTgagGATTCTGCTGAGGTCTGCAAGAAGTTCATGGCACGTGATCCCCAGGAGCTTCGTTTCACTGTTGTGGCTCTTTCCaaagcataacatttttcttattttacctAAGAGAAAAACTGCCAATCATTCAGAAGTGCTGAATACTTTAAACCTTTTATAGGTTCAATTTtgactttgaataaaaaaaagtttcaatgtTTTGACCGTAACCGACAAAGCAAATGGTAAGGAAAttagctaataataaaaaagtgtacatgcacataaaaatgttgtatcTGAATGTTTACAACTCTCTGATtgaattaatgtttgtgttcatttctccaaaatcataaaaactgttttcttgatgttaatattaattaatctaATGGTGGTGTTCTTTTTTCTGCCAGAAAGgatccatttaaaataaaagctctcCTGTTGAA

Function

symbol description
uchl3 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within Notch signaling pathway and cranial skeletal system development. Predicted to be active in cytoplasm. Is expressed in notochord. Orthologous to human UCHL3 (ubiquitin C-terminal hydrolase L3).

NR:

description
ubiquitin carboxyl-terminal hydrolase isozyme L3

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K05609 UCHL3, YUH1; ubiquitin carboxyl-terminal hydrolase L3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249724.1 True 1170 mRNA 0.40 9 14213225 14217247

Neighbor

gene id symbol gene type direction distance location
crygmxl1 crygmxl1,LOC107705174,LOC107597436,LOC107668863,LOC108424292,LOC103034814 coding upstream 29936 14182515 ~ 14183289 (+)
LOC122352118 LOC107568713,LOC107724462,LOC107663981,LOC107705172,LOC107664838 coding upstream 34050 14178373 ~ 14179175 (+)
LOC122352119 crygm2a,LOC107568720,LOC107724460,LOC107663175,LOC107705169,LOC107597400,LOC107724459,LOC107658274 coding upstream 38845 14173495 ~ 14174380 (+)
LOC122351862 LOC107664838,LOC107555340,LOC107568713,LOC107555341 coding upstream 42649 14169680 ~ 14170576 (+)
LOC122351493 LOC107724463,LOC107555344,LOC107664838,LOC107555340 coding upstream 45658 14166746 ~ 14167567 (+)
lmo7a lmo7,lmo7a,LOC107724468,LOC107668875,LOC107705164,LOC107658265,LOC107597393 coding downstream 916 14218163 ~ 14259089 (+)
acod1 LOC107705150,LOC107597428,LOC107658213,LOC107724458,LOC107568925,LOC107668871 coding downstream 62938 14280185 ~ 14283564 (+)
mrpl30 mrpl30,LOC107724503,LOC107668904,LOC107568953,LOC107705162,LOC107658263 coding downstream 68701 14285948 ~ 14287061 (+)
aff3 LOC107569057,LOC107668839,LOC107658210,LOC107597387,LOC107724445,LOC107712257 coding downstream 213516 14430763 ~ 14447802 (+)
mphosph8 mphosph8,LOC107658258,LOC107668876 coding downstream 232229 14449476 ~ 14460425 (+)
G70064 NA non-coding upstream 273495 13931619 ~ 13939730 (+)
G70045 si:dkey-91i10.3,LOC107658292,LOC107725254,LOC107555015,LOC107683415,LOC107723676,LOC107555356 non-coding upstream 426104 13777632 ~ 13787121 (+)
G70043 NA non-coding upstream 443796 13769229 ~ 13769429 (+)
G70032 NA non-coding upstream 520738 13692214 ~ 13692487 (+)
LOC122351436 LOC107555330 non-coding upstream 524192 13686665 ~ 13689033 (+)
LOC122352011 NA non-coding downstream 89300 14306547 ~ 14329484 (+)
G70125 NA non-coding downstream 115053 14332300 ~ 14335751 (+)
G70181 NA non-coding downstream 362023 14579270 ~ 14580468 (+)
G70184 NA non-coding downstream 366984 14584231 ~ 14584488 (+)
G70185 NA non-coding downstream 367344 14584591 ~ 14585026 (+)
ccnt2a ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362 other upstream 528390 13676163 ~ 13684835 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other upstream 908634 13289693 ~ 13304591 (+)
G69755 NA other upstream 1227247 12984868 ~ 12985978 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other upstream 1409817 12732298 ~ 12803408 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other upstream 1583690 12627535 ~ 12629535 (+)
LOC122351767 NA other downstream 369835 14587082 ~ 14589439 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other downstream 1183880 15401127 ~ 15425361 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other downstream 1490954 15708201 ~ 15715901 (+)
plcl1 LOC107569711,LOC107731752,LOC107690606,LOC107719808,LOC107659890,LOC107595846 other downstream 1517323 15734570 ~ 15789702 (+)
rabl3 rabl3,LOC107569739,LOC107690631,LOC107659889,LOC107595844,LOC107736356 other downstream 1682180 15899427 ~ 15901720 (+)

Expression


Co-expression Network