pou3f3a (pou3f3a,pou3f3,LOC107716796,LOC107688731,LOC107602909,LOC107721578,LOC107676544)


Basic Information

Item Value
gene id pou3f3a
gene name pou3f3a,pou3f3,LOC107716796,LOC107688731,LOC107602909,LOC107721578,LOC107676544
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6987723 ~ 6990768 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249730.1
GGGCTGAACGTAAACATTCGCGTGCTCTCGCGCTCAGAGAGAGGAACGGAGCGAGCGAGGACGGCGAAGGCTCTCCGTTGCGCGGGCATTTAATAGAGCTGTGCGCGGTTGAACGTGTCGAAGATTACCGTCAGATGGACTCtatgaaaagaagaaatgtgaGAGGCGAGATTCGGTGAGGGAGCGGGACAAGAGAGAAGTTTACGAAGGAGCGTCTTCTTCTGATAAGGCTTCTCGTCGGGTCAGGAGCGCGCGCGATGAAGTTCGGTGTGGGATTTGTGTAATCGTCACGAGAAGTTGACGCGAAGGAGAACGAACAAGACTTTTTTGGTTTCGTAATTGGTCTTTAAGACGATGACATTGAGGACGGAATGCAATCGCGAAAACAGCTTCCGTGCATAATGTGGATTTCTGCGCGGGAGGTGTCTCCTTTTGCTTCTGATAAAAGGAGGTTTTGACGGATATATTTTGGCCATCTTTTGCTGTGCCGTCGGTGGACCAAATCAAAATACCGCGCATACTTTTCCAGCTTGAATAATTCATGAAATAGTGCGTGCCTTCGAGGCTTGGAAAAAAGTTACGGCGATACGGGGAGGGGGGAATAACAAGTAGAATTGTTCACAGTGGTGAGGGGGGATGGCCACGGCGGCTTCCAATCCTTACCTGGCCAGCAATAGCATTCTCTCGTCAGCCTCGATCGTGCACTCGGAGTCCGGAGGTGGTGGCATGCAGCCGGGAAGCGGTGCTGTAACATCGGTGTCGGGAGGTTACCGGGGAGACCCCGCGGTCAAGATGGTGCAGAGCGACTTCATGCAAGGAGCCATGGCGGCCAGTAACGGGGGGCACATGCTGAGCCATGCCCATCAGTGGGTTACCTCGCTGCCGCACGCGGCCGCCGCGGCCGCCGCCGCCGCAGCCGCCGCGGCGGCAGAGGCCGGTTCCCCGTGGTCCTCCAGCCCAGTCGGCATGGCCGGGAGCCCACAGCAACAAGACGTGAAGAACAGCTCAAACAGAGACGACCTGCACTCCAGCACCGCGCTTCACCACAGAGCCTCGCATTTAGGGGCTCACCAGTCGCACCAAAGCGCATGGGGTGGCACCGCAGCCTCCCACATCCCCACCATCACCGGAGGACAGCAGCAGTCCCAGCAGTCCCTCATCTATTCCCAGCCGGGTGGCTTCACGGTCAACGGGATGCTGAACCCTCCCGGGAGCCTGGTCCACCCCGGGCTGATGCGAGGAGACTCGCCAGAGATGGAtcaccatcaccaccaccaccaccatcagcagcagcacccccaccaccaccaccaccagcagcagcagcaccacGCGGGAGTCAACAGCCACGACTCGCACTCGGACGAGGACACGCCGACCTCCGACGACCTGGAGCAGTTTGCCAAACAGTTCAAGCAGCGTCGGATCAAACTGGGTTTTACTCAAGCCGACGTCGGGCTAGCGCTGGGGACCCTTTACGGAAACGTTTTCTCGCAGACCACCATTTGCAGGTTCGAGGCTCTCCAGCTGAGCTTCAAAAACATGTGCAAACTCAAGCCGCTGCTGAACAAGTGGCTGGAGGAGGCCGACTCGACCACGGGCAGTCCCACCAGCATCGACAAAATAGCGGCTCAAGGCAGGAAGCGAAAGAAGCGCACCTCCATCGAGGTGAGCGTGAAGGGAGCCTTGGAGAGCCATTTTTTGAAATGCCCCAAGCCGTCAGCGCAGGAGATATCCTCTCTGGCGGACAACCTGCAGCTGGAAAAGGAAGTGGTTCGGGTCTGGTTCTGCAACCGAAGGCAGAAGGAGAAGAGGATGACGCCGCCTGGGGTCCCTCAGACGCCCGAGGACGTGTACAGCCATGCCGGCAACGGGAGTTTTGTGGTAGATTACTTAAAAGGTGCAAGTTTGAAAGATGAACCGGACAGCAACCACAACGTGACAACAACCGCGAGCTCCTACGGCCAGGAGATTCTGGTGCACTGACACCCAAATCAGAACCAGCCCAAAGCCAACGTAGACTTTACGGATTGAAATTTAACGAAAGAACTCCCGAGGACGCGGACCGACGCAGACGAACACTAAATATCGAACAGCGGAAGAATTTACCCCAGGACACGTACCGGTTTTACGCACAGGAATTATATCACTCATTTTAACAAAACGGAATCGTCTTGTCTGCTTCTTGGAGCATTACGTGCAACAAACTACACCTTTTctatttcatagtatttttgtGGACCACACTTCCGTGAATAGCTTTTACACAGAGAAAactcttaagaaaaaaaataaggaaaaaaaaaaaaaaaaaaaaagattgattacTCTCGAGCTGCACTTATTTTCAGATTTCAGCCGACCCCTTGTAaactctttttgttgttgtttggctGAATAATCGTGGATATTGCCCTCTCTTCACTGCTTTTTCTAGGCAGGTTTTTTTGGTGGGTTTTGATAACAAGTCTGTGTAAATTTGGCAATATAAATTCTCTGTGTTGATTTAAACgatttgctttatatttttcaactaaaatcaatttcaaaatattttcaggaGCAATGACAGATTCGTCGCGCGCTGTGATGACTTTCGACCTAGTAGCATCTCTTGTAGGCCTCCCCtgccattttaaatattgattatattttatactgttagTATTACACTTGTTATTATATACGGATATTGTACACGAGCACATTGACGAAGCTGAAACAAACCGTTGTCAAACCGTTTCCCCCCGTGGTTGTTATTTAAGTTCAGTTCTGACTCAGCGAGAAGTGAATGAGAACAATAAATCTGATAGCTTTCAGA
>XM_043249731.1
GGGGCTGAACGTAAACATTCGCGTGCTCTCGCGCTCAGAGAGAGGAACGGAGCGAGCGAGGACGGCGAAGGCTCTCCGTTGCGCGGGCATTTAATAGAGCTGTGCGCGGTTGAACGTGTCGAAGATTACCGTCAGATGGACTCtatgaaaagaagaaatgtgaGAGGCGAGATTCGGTGAGGGAGCGGGACAAGAGAGAAGTTTACGAAGGAGCGTCTTCTTCTGATAAGGCTTCTCGTCGGGTCAGGAGCGCGCGCGATGAAGTTCGGTGTGGGATTTGTGTAATCGTCACGAGAAGTTGACGCGAAGGAGAACGAACAAGACTTTTTTGGTTTCGTAATTGGTCTTTAAGACGATGACATTGAGGACGGAATGCAATCGCGAAAACAGCTTCCGTGCATAATGTGGATTTCTGCGCGGGAGGTGTCTCCTTTTGCTTCTGATAAAAGGAGGTTTTGACGGATATATTTTGGCCATCTTTTGCTGTGCCGTCGGTGGACCAAATCAAAATACCGCGCATACTTTTCCAGCTTGAATAATTCATGAAATAGTGCGTGCCTTCGAGGCTTGGAAAAAAGTTACGGCGATACGGGGAGGGGGGAATAACAAGTAGAATTGTTCACAGTGGTGAGGGGGGATGGCCACGGCGGCTTCCAATCCTTACCTGGCCAGCAATAGCATTCTCTCGTCAGCCTCGATCGTGCACTCGGAGTCCGGAGGTGGTGGCATGCAGCCGGGAAGCGGTGCTGTAACATCGGTGTCGGGAGGTTACCGGGGAGACCCCGCGGTCAAGATGGTGCAGAGCGACTTCATGCAAGGAGCCATGGCGGCCAGTAACGGGGGGCACATGCTGAGCCATGCCCATCAGTGGGTTACCTCGCTGCCGCACGCGGCCGCCGCGGCCGCCGCCGCCGCAGCCGCCGCGGCGGCAGAGGCCGGTTCCCCGTGGTCCTCCAGCCCAGTCGGCATGGCCGGGAGCCCACAGCAACAAGACGTGAAGAACAGCTCAAACAGAGACGACCTGCACTCCAGCACCGCGCTTCACCACAGAGCCTCGCATTTAGGGGCTCACCAGTCGCACCAAAGCGCATGGGGTGGCACCGCAGCCTCCCACATCCCCACCATCACCGGAGGACAGCAGCAGTCCCAGCAGTCCCTCATCTATTCCCAGCCGGGTGGCTTCACGGTCAACGGGATGCTGAACCCTCCCGGGAGCCTGGTCCACCCCGGGCTGATGCGAGGAGACTCGCCAGAGATGGAtcaccatcaccaccaccaccaccatcagcagcagcacccccaccaccaccaccaccagcagcagcagcaccacGCGGGAGTCAACAGCCACGACTCGCACTCGGACGAGGACACGCCGACCTCCGACGACCTGGAGCAGTTTGCCAAACAGTTCAAGCAGCGTCGGATCAAACTGGGTTTTACTCAAGCCGACGTCGGGCTAGCGCTGGGGACCCTTTACGGAAACGTTTTCTCGCAGACCACCATTTGCAGGTTCGAGGCTCTCCAGCTGAGCTTCAAAAACATGTGCAAACTCAAGCCGCTGCTGAACAAGTGGCTGGAGGAGGCCGACTCGACCACGGGCAGTCCCACCAGCATCGACAAAATAGCGGCTCAAGGCAGGAAGCGAAAGAAGCGCACCTCCATCGAGGTGAGCGTGAAGGGAGCCTTGGAGAGCCATTTTTTGAAATGCCCCAAGCCGTCAGCGCAGGAGATATCCTCTCTGGCGGACAACCTGCAGCTGGAAAAGGAAGTGGTTCGGGTCTGGTTCTGCAACCGAAGGCAGAAGGAGAAGAGGATGACGCCGCCTGGGGTCCCTCAGACGCCCGAGGACGTGTACAGCCATGCCGGCAACGTGAGTGCAGACACACCGCCTCCGTCCATGGACTGCAAACGGGAGTTTTGTGGTAGATTACTTAAAAGGTGCAAGTTTGAAAGATGAACCGGACAGCAACCACAACGTGACAACAACCGCGAGCTCCTACGGCCAGGAGATTCTGGTGCACTGACACCCAAATCAGAACCAGCCCAAAGCCAACGTAGACTTTACGGATTGAAATTTAACGAAAGAACTCCCGAGGACGCGGACCGACGCAGACGAACACTAAATATCGAACAGCGGAAGAATTTACCCCAGGACACGTACCGGTTTTACGCACAGGAATTATATCACTCATTTTAACAAAACGGAATCGTCTTGTCTGCTTCTTGGAGCATTACGTGCAACAAACTACACCTTTTctatttcatagtatttttgtGGACCACACTTCCGTGAATAGCTTTTACACAGAGAAAactcttaagaaaaaaaataaggaaaaaaaaaaaaaaaaaaaaagattgattacTCTCGAGCTGCACTTATTTTCAGATTTCAGCCGACCCCTTGTAaactctttttgttgttgtttggctGAATAATCGTGGATATTGCCCTCTCTTCACTGCTTTTTCTAGGCAGGTTTTTTTGGTGGGTTTTGATAACAAGTCTGTGTAAATTTGGCAATATAAATTCTCTGTGTTGATTTAAACgatttgctttatatttttcaactaaaatcaatttcaaaatattttcaggaGCAATGACAGATTCGTCGCGCGCTGTGATGACTTTCGACCTAGTAGCATCTCTTGTAGGCCTCCCCtgccattttaaatattgattatattttatactgttagTATTACACTTGTTATTATATACGGATATTGTACACGAGCACATTGACGAAGCTGAAACAAACCGTTGTCAAACCGTTTCCCCCCGTGGTTGTTATTTAAGTTCAGTTCTGACTCAGCGAGAAGTGAATGAGAACAATAAATCTGATAGCTTTCAGA

Function

symbol description
pou3f3a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in central nervous system; neural tube; neurons; pharyngeal arch; and pronephric duct. Orthologous to human POU3F3 (POU class 3 homeobox 3).
pou3f3 Enables protein homodimerization activity. Involved in positive regulation of transcription, DNA-templated. Located in nucleoplasm.

NR:

description
PREDICTED: POU domain, class 3, transcription factor 3-B-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09365 POU3F, OTF; POU domain transcription factor, class 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249730.1 False 2821 mRNA 0.52 2 6987723 6990767
XM_043249731.1 True 2862 mRNA 0.52 2 6987723 6990768

Neighbor

gene id symbol gene type direction distance location
gpr45 si:dkeyp-118h3.5,gpr45,LOC107602888,LOC107688775,LOC107716773,LOC107676540,LOC107721584,LOC107551066 coding downstream 12815 6969817 ~ 6974908 (-)
c9h2orf49 LOC107716774,LOC107688774,LOC107721580,LOC107676461,LOC107551065 coding downstream 18516 6965229 ~ 6969207 (-)
nck2a nck2a,LOC107602910,LOC107688727,LOC107721610,LOC107676443,LOC107551075,LOC107716798 coding downstream 44281 6896477 ~ 6943442 (-)
ecrg4a ecrg4a,LOC107602890,LOC107688728,LOC107716776,LOC107721563 coding downstream 99349 6883488 ~ 6888374 (-)
tmtops2b tmtops2b,LOC107602912,LOC107688724,LOC107716802,LOC107721599,LOC106586769 coding downstream 155469 6807329 ~ 6832254 (-)
tmem182a tmem182,tmem182a,LOC107721587,LOC107551067,LOC107602887,LOC107716770,LOC107676521 coding upstream 103135 7093903 ~ 7097792 (-)
slc9a2 LOC107688777,LOC107602878,LOC107716761 coding upstream 115791 7106559 ~ 7117477 (-)
mgat4a mgat4a,LOC107721595 coding upstream 164211 7154979 ~ 7194511 (-)
creg2 creg2,LOC107716793,LOC107721575,LOC107602906 coding upstream 205347 7196115 ~ 7200021 (-)
cracdla kiaa1211l,LOC107602905,LOC107688737,LOC107602875 coding upstream 209502 7200270 ~ 7214956 (-)
LOC122351994 NA non-coding downstream 92326 6892652 ~ 6895397 (-)
G68357 NA non-coding downstream 104747 6882585 ~ 6882976 (-)
G68328 st6gal2a,LOC107676409,LOC107721598,LOC107688722,LOC107551073,LOC107602911,LOC107716800 non-coding downstream 174708 6809848 ~ 6813015 (-)
G68333 LOC107721598,LOC107716800,LOC107688722,LOC107579700 non-coding downstream 193348 6793402 ~ 6794375 (-)
LOC122351577 NA non-coding downstream 210749 6775074 ~ 6776974 (-)
G68473 NA non-coding upstream 337061 7327829 ~ 7341494 (-)
G68489 NA non-coding upstream 390522 7381290 ~ 7381508 (-)
G68555 nrp2b,LOC107688766,LOC107688751,LOC107752901 non-coding upstream 824481 7815249 ~ 7818832 (-)
G68554 nrp2b,LOC107596550,LOC107716756,LOC107688751,LOC107593002,LOC107752901 non-coding upstream 829240 7820008 ~ 7821889 (-)
LOC122352023 NA non-coding upstream 1480095 8470863 ~ 8474578 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 726654 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 887811 6099071 ~ 6099912 (-)
G68124 dip2a,LOC107549743,LOC107752588,LOC107720936 other downstream 943798 6043275 ~ 6043925 (-)
LOC122351463 LOC107689507,LOC107549921,LOC107670332,LOC107752589,LOC107549740 other downstream 1056587 5912855 ~ 5931136 (-)
LOC122351915 LOC108191338,LOC101883771,LOC101885620 other downstream 1587843 5396865 ~ 5399880 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other upstream 80217 7070985 ~ 7153954 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other upstream 1023681 8014449 ~ 8024672 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other upstream 1085700 8076468 ~ 8094847 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 2917420 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 3442739 10433507 ~ 10443619 (-)

Expression


Co-expression Network