LOC122352174 (rbm45,LOC107716918,LOC107752596)


Basic Information

Item Value
gene id LOC122352174
gene name rbm45,LOC107716918,LOC107752596
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3913638 ~ 3922878 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249752.1
TCCGCGGGTTTCTTCGGCGGCCGTGTTGTTCACGTGGGTCGCTGTAGGGATGATATTTTAACCGTACGCGTCTAAACGTCAACACAGCCGCCGGCGGGCTAGACGCCTCGCAGTTAACGACGCACGTTAGACTTATTACCGCGAGTATGGACGAGTCTGGCCGAGCCTCCTCTTATCTGGACGAGCCACCCAACAGCCGGCTGTTCCTCGTCACCAGCAAGTCCATCACGGAGGAGACCATAAGAGAGCATTTCGCGGCTTTCGGGGAGATTCAGGACATTTGGGTGGTGAAAGACAAGCAGACGAAAGAGTCGAAAGGGGTGTCGTTCGTCAAGTTCGCCAAGTCCTCGCAAGCCTGCGCCGCGATGGAGGAGATGCACGGCAGGTGCCTGGCCGAAGGGACCAAGCCGATAAAAGTCTTCATCGCTCAGTCCAGATCTTCTGGCAGTCACAGAGACGTGGAGGACGAGGAGCTCACCAGAATATTTGTCATGATCCCCAAATCCTTCACCGAGGAAGATCTAAAAGACACATTTAAGGGATATGGGGATATAGAGTATGCTATTATTATAAGGAATAAGACCACAGGTGAAAGTAAAGGTCTGGGTTACGTCAGGTTTCACAAACCTTCACAAGCCGCCAAAGCCATCGAAAAATGTGACAAGACTTTTAGAGCTATTTTAGCTGAGCCCAGGACCAAAAACGCTTCAGCAGACAATGACTATTTCAGCAACCCTAGAGCGGAGCACCCCGGGAACGACGCAGCCTCGAACTCGTACACCTTCGCACACGAGTCCAGCAGCTACTCCACGGGGGACACGTGGAGCTCGGACATCATCACCCGGTGCCTGCTGGTGTCGTCCCGGGCCGCGGTCACTCAGGAGCAGATCTGCGCTCTGTTTGACCTGATCCCGGGGATGGACTTCTGTGAGATGCAGAGAGATCAGTACGGCTTCAGCAAAGGTCAGGTGGTGGTGCGCTACAATAACCTGGGCTCAGCGGTTTATGCGAAAGAGAAGCTGAATGGGTTTGAGTATCCGCCCGGCAACCGTCTCTCGGTATCTTACATCGATGACGGGGAGGACAGAACGAGTCCCGTGGGGAAGATGGCGATGCAGCTCGTGGCGGCTCAGATGATGTCTATGGTGTGGAACGGCCCTTCTGGCGCACAGCTAATGAAGACTAGCACGGGCTATACAGCGCCCCCTGTACCACAGAAAGCACGTGTGCAGACAGATGTAGCTCTCCCATCTCTAAAGAAACTGGTGGCGTCTGACAGCGTGGTGAAGGAGAGGCTGTTTGTCATCTTCAACCCCTCACCTCTGCCTGTGGATGTGCTGGAGGACGTGTTCTGTCGTTTCGGTTCCCTGATGGAGGTTTACTTGGTTCCGGGCCGGAATGTGGGATATATAAAGTATGCAGAGCGGAAAGCCGCTCACGACGCCATAGCCCTGCTGCACGGTAAAGTGATTAACGGCGTCAAGATGAAGGTGATGCTGGCAGACCCGCCCAAAGAGGAATCGCACAAACGCCAGAGAACTtactgacctttgaccttacGACAGGCTCAGAGGTTTAGATGACATGACGCATGACCCCGACATGACAGGACGGCTATTTATGATGACACGACCTCATAACGACGGACACTGACTGCCGTTTCAGtgctttaaagtgtttttactttctccctttttgttttcttgtttgcaATAGAGACACTTGACCACTTGATGTTTTCATCTTGGTTAAATCTGATTGTAGGGTCTGCAAAGGTGTGGAACGACAGTAGGTCGAGTAAAAGACGACAGAATCGTTACATGTCAAGTAAAAGCGACAGGCAAAGCTTCATGCATGAATTCAGTATGTACCCGAAGTGTGCGCAGTGAGCAAATAAAGAGTTTGACAAACGAA
>XR_006251861.1
TCCGCGGGTTTCTTCGGCGGCCGTGTTGTTCACGTGGGTCGCTGTAGGGATGATATTTTAACCGTACGCGTCTAAACGTCAACACAGCCGCCGGCGGGCTAGACGCCTCGCAGTTAACGACGCACGTTAGACTTATTACCGCGAGTATGGACGAGTCTGGCCGAGCCTCCTCTTATCTGGACGAGCCACCCAACAGCCGGCTGTTCCTCGTCACCAGCAAGTCCATCACGGAGGAGACCATAAGAGAGCATTTCGCGGCTTTCGGGGAGATTCAGGACATTTGGGTGGTGAAAGACAAGCAGACGAAAGAGTCGAAAGGGGTGTCGTTCGTCAAGTTCGCCAAGTCCTCGCAAGCCTGCGCCGCGATGGAGGAGATGCACGGCAGGTGCCTGGCCGAAGGGACCAAGCCGATAAAAGTCTTCATCGCTCAGTCCAGATCTTCTGGCAGTCACAGAGACGTGGAGGACGAGGAGCTCACCAGAATATTTGTCATGATCCCCAAATCCTTCACCGAGGAAGATCTAAAAGACACATTTAAGGGATATGGGGATATAGAGTATGCTATTATTATAAGGAATAAGACCACAGGTGAAAGTAAAGGTCTGGGTTACGTCAGGTTTCACAAACCTTCACAAGCCGCCAAAGCCATCGAAAAATGTGACAAGACTTTTAGAGCTATTTTAGCTGAGCCCAGGACCAAAAACGCTTCAGCAGACAATGACTATTTCAGCAACCCTAGAGCGGAGCACCCCGGGAACGACGCAGCCTCGAACTCGTACACCTTCGCACACGAGTCCAGCAGCTACTCCACGGGGGACACGTGGAGCTCGGACATCATCACCCGGTGCCTGCTGGTGTCGTCCCGGGCCGCGGTCACTCAGGAGCAGATCTGCGCTCTGTTTGACCTGATCCCGGGGATGGACTTCTGTGAGATGCAGAGAGATCAGTACGGCTTCAGCAAAGGTCAGGTGGTGGTGCGCTACAATAACCTGGGCTCAGCGGTTTATGCGAAAGAGAAGCTGAATGGGTTTGAGTATCCGCCCGGCAACCGTCTCTCGGTATCTTACATCGATGACGGGGAGGACAGAACGAGTCCCGTGGGGAAGATGGCGATGCAGCTCGTGGCGGCTCAGATGATGTCTATGGTGTGGAACGGCCCTTCTGGCGCACAGCTAATGAAGACTAGCACGGGCTATACAGCGCCCCCTGTACCACAGAAAGCACGTGTGCAGACAGATGTAGCTCTCCCATCTCTAAAGAAACTGGTGGCGTCTGACAGCGTGGTGAAGGAGAGGCTGTTTGTCATCTTCAACCCCTCACCTCTGCCTGTGGATGTGCTGGAGGACGTGTTCTGTCGTTTCGGTTCCCTGATGGAGGTTTACTTGGTTCCGGGCCGGAATGTGGGATATATAAAGTATGCAGAGCGGAAAGCCGCTCACGACGCCATAGCCCTGCTGCACGGTAAAGTGATTAACGGCGTCAAGATGAAGGTGATGCTGGCAGACCCGCCCAAAGAGGAATCGCACAAACGCCAGAGAACTtactgacctttgaccttacGACAGGCTCAGAGGTTTAGATGACATGACGCATGACCCCGACATGACAGGACGGCTATTTATGATGACACGACCTCATAACGACGGACACTGACTGCCGTTTCAGtgctttaaagtgtttttactttctccctttttgttttcttgtttgcaATAGAGACACTTGACCACTTGATGTTTTCATCTTGGTTAAATCTGATTGTAGGGTCTGCAAAGGTGTGGAACGACAGTAGGTCGAGTAAAAGACGACAGAATCGTTACATGTCAAGTAAAAGCGACAGGCAAAGCTTCATGCATGAATTCAGTGATGTGGAAGTACCTGCTCTTTCCATGCTCTCCTTCTCAGACAGGCATCGGACTGAGTTCTTGACTGAAGACGCTCCTTGAACACAACATTGGTCAGGCATGAGACACaaacaaaaagggaaaaaatgacTACTGGGGCCACTGATTAAGGGGATGCTTACATATGAATACAATGCTAAAAGATATTAAGAACACATGTACTATGAgttgtattatttcattaaaattcatagatttttttattataccc

Function

symbol description
rbm45 Predicted to enable RNA binding activity. Orthologous to human RBM45 (RNA binding motif protein 45).

NR:

description
PREDICTED: RNA-binding protein 45-like isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K25081 RBM45; RNA-binding protein 45

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249752.1 False 1914 mRNA 0.52 10 3913638 3922552
XR_006251861.1 True 2115 transcript 0.51 11 3913638 3922878

Neighbor

gene id symbol gene type direction distance location
LOC122351330 LOC107571834,LOC107657380,LOC107716910 coding upstream 2818 3906741 ~ 3910820 (+)
stx19 stx19,LOC107664001,LOC107749033,LOC107728237 coding upstream 146101 3760833 ~ 3767537 (+)
rsph1 rsph1,LOC107749034,LOC107728239,LOC107670901,LOC107663994 coding upstream 154423 3754816 ~ 3759215 (+)
fbxl3a fbxl3,fbxl3a,LOC107549764,LOC107664003,LOC107670904 coding upstream 161015 3744006 ~ 3752623 (+)
mycbp2 mycbp2,LOC107549765,LOC107664005 coding upstream 170899 3670562 ~ 3742739 (+)
LOC122351193 rapgef4,LOC107742951,LOC107671325 coding downstream 3013 3925891 ~ 3945608 (+)
zak zak,LOC107742952,LOC107671274,LOC107718456,LOC107657350,LOC107600726,LOC107588248,LOC105908008,LOC107602297 coding downstream 25140 3948018 ~ 3981211 (+)
sp9 sp9,LOC107657367,LOC107742954,LOC107600696,LOC107588267,LOC107739462 coding downstream 186772 4109650 ~ 4112225 (+)
hoxd13a NA coding downstream 458646 4381524 ~ 4382885 (+)
hoxd12a hoxd12a,LOC107600749,LOC107716915,LOC107657365,LOC107725821 coding downstream 462561 4385439 ~ 4387003 (+)
G67448 NA non-coding upstream 83866 3828823 ~ 3829772 (+)
LOC122351161 NA non-coding upstream 267024 3642961 ~ 3646614 (+)
G67418 NA non-coding upstream 275556 3601318 ~ 3638082 (+)
LOC122351601 LOC107749038,LOC107663997 non-coding upstream 294332 3606570 ~ 3619306 (+)
LOC122351351 NA non-coding upstream 321398 3586803 ~ 3592240 (+)
G67562 LOC107588232,LOC107742953,LOC107671312,LOC107657349 non-coding downstream 23656 3946534 ~ 4031820 (+)
G67604 NA non-coding downstream 115718 4038596 ~ 4038822 (+)
G67606 NA non-coding downstream 141759 4064637 ~ 4064961 (+)
G67637 NA non-coding downstream 233778 4156656 ~ 4157963 (+)
G67641 NA non-coding downstream 239478 4162356 ~ 4165072 (+)
LOC122351398 dnajc15,LOC107549910 other upstream 633586 3262607 ~ 3280052 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other upstream 717020 3194773 ~ 3196618 (+)
bpifcl bpi other upstream 2177318 1713812 ~ 1736320 (+)
G66795 NA other upstream 2778649 1127526 ~ 1134989 (+)
LOC122351650 si:ch1073-55a19.2,LOC107670647,LOC107709149,LOC107686982,LOC107559216,LOC108440489,LOC107686979,LOC107709150 other upstream 3014259 858680 ~ 899379 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other downstream 25158 3948036 ~ 3983582 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other downstream 58468 3981346 ~ 3985962 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other downstream 197649 4120527 ~ 4127013 (+)
G67630 NA other downstream 218176 4141054 ~ 4222171 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other downstream 487017 4409895 ~ 4413160 (+)

Expression


Co-expression Network