si:ch73-390b10.2 (si:ch73-390b10.2,LOC107688773,LOC107551072,LOC107692818,LOC108266990)


Basic Information

Item Value
gene id si:ch73-390b10.2
gene name si:ch73-390b10.2,LOC107688773,LOC107551072,LOC107692818,LOC108266990
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6719754 ~ 6726798 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249753.1
GTCATGACGTCAGCAGCTTGACAGCTCAGCCGGACACTTGTTCTgttcaatttttgtttttctgcgTTAGCAGAGCCTTTTTAACACAATGAGCCGAGGGTGCGTTtgacatttactgtataaaccCCATACTACACGCTACGCCATGTCTTTCTTCGTGGATTCGGTGATTATGTTCACTTCTCAGGTGCTGTTTTTTGGGTTCGGGTGGCTGTTTTTCATGAGGCAGCTGTTTAAGGATTATGAGGTTCGGCAGTATGTTGTGCAGGTGGTCTTTTCCATCACCTTTGCCTTCTCTTGCACTATGTTTGAGCTTATCATCTTCGAGATCCTCGGTGTGTTAAACAGCACgtcCAGATATTTCCACTGGAAGCTGAATTTGTATGTAATATTACTGGTTCTAATATTTGTGGTGCCTTTCTACATTGGCTATTTTGTGGTCAGCAATATACGATTATTGCAGAGACAAAGGTTGCTTTTTTCATGTGTGGTCTGGTTCACGTTTATGTATTTCTTCTGGAAGCTGGGTGATCCTTTCCCTATACTTAGTCCAAAGCACGGCATTCTGTCCATAGAGCAGCTGATCAGTCGTGTGGGGGTCATTGGGGTCACACTGATGGCTCTTCTCTCTGGCTTTGGTGCTGTGAACTGTCCTTATACATACATGTCGTATTTCCTGAGAAATGTGACAGACAGCGATATCCTGGCCCTGGAGAGAAGACTTCTTCAGACTATGGACATGATTGTcagtaaaaagaaaagGATTGCCATGACAAGAAGGCAGATGTACCAGCGTGGAGAAGAGCAGAATAAACAGACGGGATTCTGGGGGATGATTAAGAGCGTGACCTCCTCACCATCAGGCAGTGAGAATCTTTCTCTGATCCAGCAGGAAGTGGATGCTCTGGAGGAGCTCAGTAGACAGCTTTTCCTGGAGACCGTGGACCTGCAAGCCACCAAGGAACGGATAGAAtactcaaaaacatttcaagggAAATACTTCAACTTCTTAGGGTATTTCTTCTCCATTTATTGTGTGTGGAAAATCTTCATGGCCACTATAAACATAGTGTTTGACCGTGTGGGGAAGACCGATCCAGTGACCAGAGGAATCGAGATCACAGTCAACTATCTCGGCATTCAGTTTGATGTCAAGTTCTGGTCTCAGCACATTTCCTTTATCCTGGTGGGAATCATCATAGTCACGTCCATACGAGGCCTTTTAATCACACTCACCAAGTTTTTCTACGCCATCTCCAGCAGCAAGTCCTCCAATGTCATTGTGCTCGTCCTGGCTCAGATCATgGGCATGTATTTTGTGTCCTCTGTGCTCCTGATGCGGATGAGCATGCCATTAGAGTACCGCACCATAGTGACAGAGGTGCTGGGAGAGCTGCAGTTCAACTTCTACCACCGCTGGTTTGACGTGATCTTCCTGGTCAGCGCTCTCTCCAGCATCCTCTTCCTCTACCTGGCCCATAAACAGGCACCCGAGAAGCACATGACCCTGTGACCTCACAAGTGACCtcgtcagagagagagagagactgaaatgTCTTTCTTTCGTCTCTACTTTTAGAAGGACTTTTATGCCTCTGCCGTGTAATGAGTATTATCGGGTCTGTATTTCCTGAATCAGGAGGGCCCCGGAAACACTGTTTGActttggtcaaaaaaaaaaaaattataataacgtCGATTTGCTGTATCATTTAAATAGACTCATGTTAATGGAGGGGACAAAACAGTATACaatgtgggtgttttttttcataaaatgcatataatttccCATACCAGGTGTCATTATGTTTACCACTGTAAGCGAACGAGCTAAATGCTCTCACTAGTTTGTTCACCATGAAATCAGTTACTCTTGAGCCGTCTTTTATCATTAATAAGCATCAGATCTATATCTCAGCACACCCAGTTATGTTACAGTGGACTGTTGGactcttgtttttctttcaggcCTGTTAATCGTTACTATCATTCCACCTCTCATTAAGAACTGCAATGATTCACGTGTGGATGCTGCCTTGAGTGACAGTCGTAATCTTCTGCTGAAATCACATCAGCTGGAAAAGAACATGCGTACTTTGGGCTTTTGTATGATCGTTTTTTTTGTGGGTGTTAGACAGACAGGTGCCGGTGATTTACTGAAAAGGCAATGCCTGCGTGCCAGAGATGTAACCGCCTTGGATTTCTCGTCAAATGCGGGAAAGCTCCGATTTCCATTAAAAGGCCTTTTCAAACTTT

Function

symbol description
si:ch73-390b10.2 Predicted to enable voltage-gated anion channel activity. Predicted to be involved in intracellular pH reduction. Predicted to act upstream of or within ion transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi cisterna membrane. Orthologous to several human genes including GPR89A (G protein-coupled receptor 89A).

NR:

description
Golgi pH regulator

GO: NA

KEGG:

id description
K22193 GPR89, GPHR; golgi pH regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249753.1 True 2259 mRNA 0.44 14 6719754 6726798

Neighbor

gene id symbol gene type direction distance location
LOC122351204 LOC107716777,LOC107688771,LOC100331465,LOC107602892,LOC107702999 coding downstream 11546 6686218 ~ 6708208 (-)
LOC122352171 fam155a,LOC107716804,LOC107721616,LOC107570097,LOC107702989,LOC107688721,LOC101886421,LOC107735187 coding downstream 120556 6501409 ~ 6599198 (-)
abhd13 abhd13,LOC107570096,LOC107702974,LOC107688719,LOC107551070 coding downstream 221550 6492609 ~ 6498204 (-)
tnfsf13b tnfsf13b,LOC107702981,LOC107688720,LOC107721586 coding downstream 227398 6487238 ~ 6492356 (-)
myo16 myo16,LOC107716764,LOC107688718 coding downstream 242208 6319090 ~ 6477546 (-)
tmtops2b tmtops2b,LOC107602912,LOC107688724,LOC107716802,LOC107721599,LOC106586769 coding upstream 80531 6807329 ~ 6832254 (-)
ecrg4a ecrg4a,LOC107602890,LOC107688728,LOC107716776,LOC107721563 coding upstream 156690 6883488 ~ 6888374 (-)
nck2a nck2a,LOC107602910,LOC107688727,LOC107721610,LOC107676443,LOC107551075,LOC107716798 coding upstream 169679 6896477 ~ 6943442 (-)
c9h2orf49 LOC107716774,LOC107688774,LOC107721580,LOC107676461,LOC107551065 coding upstream 238431 6965229 ~ 6969207 (-)
gpr45 si:dkeyp-118h3.5,gpr45,LOC107602888,LOC107688775,LOC107716773,LOC107676540,LOC107721584,LOC107551066 coding upstream 243019 6969817 ~ 6974908 (-)
G68270 LOC107716762,LOC107688772,LOC107602882,LOC107721583 non-coding downstream 1611 6715996 ~ 6718143 (-)
G68266 NA non-coding downstream 21861 6697686 ~ 6697893 (-)
G68265 NA non-coding downstream 36743 6680095 ~ 6683011 (-)
G68189 NA non-coding downstream 478152 6241322 ~ 6241602 (-)
LOC122351301 NA non-coding downstream 577072 6117851 ~ 6142682 (-)
LOC122351577 NA non-coding upstream 48276 6775074 ~ 6776974 (-)
G68333 LOC107721598,LOC107716800,LOC107688722,LOC107579700 non-coding upstream 66604 6793402 ~ 6794375 (-)
G68328 st6gal2a,LOC107676409,LOC107721598,LOC107688722,LOC107551073,LOC107602911,LOC107716800 non-coding upstream 83050 6809848 ~ 6813015 (-)
G68357 NA non-coding upstream 155787 6882585 ~ 6882976 (-)
LOC122351994 NA non-coding upstream 165854 6892652 ~ 6895397 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 458685 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 619842 6099071 ~ 6099912 (-)
G68124 dip2a,LOC107549743,LOC107752588,LOC107720936 other downstream 675829 6043275 ~ 6043925 (-)
LOC122351463 LOC107689507,LOC107549921,LOC107670332,LOC107752589,LOC107549740 other downstream 788618 5912855 ~ 5931136 (-)
LOC122351915 LOC108191338,LOC101883771,LOC101885620 other downstream 1319874 5396865 ~ 5399880 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other upstream 344187 7070985 ~ 7153954 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other upstream 1287651 8014449 ~ 8024672 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other upstream 1349670 8076468 ~ 8094847 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 3181390 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 3706709 10433507 ~ 10443619 (-)

Expression


Co-expression Network