rbm45 (rbm45,LOC107716918,LOC107752596)


Basic Information

Item Value
gene id rbm45
gene name rbm45,LOC107716918,LOC107752596
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4709053 ~ 4717233 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249767.1
TCCGCGGGTTTCTTCGGCGGCCGTGTTGTTCACGTGGGTCGCTGTAGGGATGATATTTTAACCGTACGCGTCTAAACGTCAACACAGCCGCCGGCGGGCTAGACGCCTCGCAGTTAACGACGCACGTTAGACTTATTACCGCGAGTATGGACGAGTCTGGCCGAGCCTCCTCTTATCTGGACGAGCCACCCAACAGCCGGCTGTTCCTCGTCACCAGCAAGTCCATCACGGAGGAGACCATAAGAGAGCATTTCGCGGCTTTCGGGGAGATTCAGGACATTTGGGTGGTGAAAGACAAGCAGACGAAAGAGTCGAAAGGGGTGTCGTTCGTCAAGTTCGCCAAGTCCTCGCAAGCCTGCGCCGCGATGGAGGAGATGCACGGCAGGTGCCTGGCCGAAGGGACCAAGCCGATAAAAGTCTTCATCGCTCAGTCCAGATCTTCTGGCAGTCACAGAGACGTGGAGGACGAGGAGCTCACCAGAATATTTGTCATGATCCCCAAATCCTTCACCGAGGAAGATCTAAAAGACACATTTAAGGGATATGGGGATATAGAGTATGCTATTATTATAAGGAATAAGACCACAGGTGAAAGTAAAGGTCTGGGTTACGTCAGGTTTCACAAACCTTCACAAGCCGCCAAAGCCATCGAAAAATGTGACAAGACTTTTAGAGCTATTTTAGCTGAGCCCAGGACCAAAAACGCTTCAGCAGACAATGACTATTTCAGCAACCCTAGAGCGGAGCACCCCGGGAACGACGCAGCCTCGAACTCGTACACCTTCGCACACGAGTCCAGCAGCTACTCCACGGGGGACACGTGGAGCTCGGACATCATCACCCGGTGCCTGCTGGTGTCGTCCCGGGCCGCGGTCACTCAGGAGCAGATCTGCGCTCTGTTTGACCTGATCCCGGGGATGGACTTCTGTGAGATGCAGAGAGATCAGTACGGCTTCAGCAAAGGTCAGGTGGTGGTGCGCTACAATAACCTGGGCTCAGCGGTTTATGCGAAAGAGAAGCTGAATGGGTTTGAGTATCCGCCCGGCAACCGTCTCTCGGTGTCTTACATCGATGACGGGGAGGACAGAACGAGTCCCGTGGGGAAGATGGCGATGCAGCTCGTGGCGGCTCAGATGATGTCTATGGTGTGGAACGGCCCTTCTGGCGCACAGCTAATGAAGACTAGCACGGGCTATACAGCGCCCCCTGTACCACAGAAAGCACGTGTGCAGACAGATGTAGCTCTCCCATCTCTAAAGAAACTGGTGGCGTCTGACAGCGTGGTGAAGGAGAGGCTGTTTGTCATCTTCAACCCCTCACCTCTGCCTGTGGATGTGCTGGAGGACGTGTTCtgTCGTTTCGGTTCCCTGATGGAGGTTTACTTGGTTCCGGGCCGGAATGTGGGATATATAAAGTATGCAGAGCGGAAAGCCGCTCACGACGCCATAGCACTGCTGCACGGTAAAGTGATTAACGGCGTCAAGATGAAGGTGATGCTGGCAGACCCGCCCAAAGAGGAATCGCACAAACGCCAGAGAACTtactgacctttgaccttacGACAGGCTCAGAGGTTTAGATGACATGACGCATGACCCCGACATGACAGGACGGCTATTTATGATGACACGACCTCATAACGACGGACACTGACTGCCGTTTCAGtgctttaaagtgtttttactttctccctttttgttttcttgtttgcaATAGAGACACTTGACCACTTGATGTTTTCATCTTGGTTAAATCTGATTGTAGGGTCTGCAAAGGTGTGGAACGACAGTAGGTCGAGTAAAAGACGACAGAATCGTTACATGTCAAGTAAAAGCGACAGGCAAAGCTTCATGCATGAATTCAGTATGTACCCGAAGTGTGCGCAGTGAGCAAATAAAGAGTTTGACAAACGAA
>XR_006251862.1
TCCGCGGGTTTCTTCGGCGGCCGTGTTGTTCACGTGGGTCGCTGTAGGGATGATATTTTAACCGTACGCGTCTAAACGTCAACACAGCCGCCGGCGGGCTAGACGCCTCGCAGTTAACGACGCACGTTAGACTTATTACCGCGAGTATGGACGAGTCTGGCCGAGCCTCCTCTTATCTGGACGAGCCACCCAACAGCCGGCTGTTCCTCGTCACCAGCAAGTCCATCACGGAGGAGACCATAAGAGAGCATTTCGCGGCTTTCGGGGAGATTCAGGACATTTGGGTGGTGAAAGACAAGCAGACGAAAGAGTCGAAAGGGGTGTCGTTCGTCAAGTTCGCCAAGTCCTCGCAAGCCTGCGCCGCGATGGAGGAGATGCACGGCAGGTGCCTGGCCGAAGGGACCAAGCCGATAAAAGTCTTCATCGCTCAGTCCAGATCTTCTGGCAGTCACAGAGACGTGGAGGACGAGGAGCTCACCAGAATATTTGTCATGATCCCCAAATCCTTCACCGAGGAAGATCTAAAAGACACATTTAAGGGATATGGGGATATAGAGTATGCTATTATTATAAGGAATAAGACCACAGGTGAAAGTAAAGGTCTGGGTTACGTCAGGTTTCACAAACCTTCACAAGCCGCCAAAGCCATCGAAAAATGTGACAAGACTTTTAGAGCTATTTTAGCTGAGCCCAGGACCAAAAACGCTTCAGCAGACAATGACTATTTCAGCAACCCTAGAGCGGAGCACCCCGGGAACGACGCAGCCTCGAACTCGTACACCTTCGCACACGAGTCCAGCAGCTACTCCACGGGGGACACGTGGAGCTCGGACATCATCACCCGGTGCCTGCTGGTGTCGTCCCGGGCCGCGGTCACTCAGGAGCAGATCTGCGCTCTGTTTGACCTGATCCCGGGGATGGACTTCTGTGAGATGCAGAGAGATCAGTACGGCTTCAGCAAAGGTCAGGTGGTGGTGCGCTACAATAACCTGGGCTCAGCGGTTTATGCGAAAGAGAAGCTGAATGGGTTTGAGTATCCGCCCGGCAACCGTCTCTCGGTGTCTTACATCGATGACGGGGAGGACAGAACGAGTCCCGTGGGGAAGATGGCGATGCAGCTCGTGGCGGCTCAGATGATGTCTATGGTGTGGAACGGCCCTTCTGGCGCACAGCTAATGAAGACTAGCACGGGCTATACAGCGCCCCCTGTACCACAGAAAGCACGTGTGCAGACAGATGTAGCTCTCCCATCTCTAAAGAAACTGGTGGCGTCTGACAGCGTGGTGAAGGAGAGGCTGTTTGTCATCTTCAACCCCTCACCTCTGCCTGTGGATGTGCTGGAGGACGTGTTCtgTCGTTTCGGTTCCCTGATGGAGGTTTACTTGGTTCCGGGCCGGAATGTGGGATATATAAAGTATGCAGAGCGGAAAGCCGCTCACGACGCCATAGCACTGCTGCACGGTAAAGTGATTAACGGCGTCAAGATGAAGGTGATGCTGGCAGACCCGCCCAAAGAGGAATCGCACAAACGCCAGAGAACTtactgacctttgaccttacGACAGGCTCAGAGGTTTAGATGACATGACGCATGACCCCGACATGACAGGACGGCTATTTATGATGACACGACCTCATAACGACGGACACTGACTGCCGTTTCAGtgctttaaagtgtttttactttctccctttttgttttcttgtttgcaATAGAGACACTTGACCACTTGATGTTTTCATCTTGGTTAAATCTGATTGTAGGGTCTGCAAAGGTGTGGAACGACAGTAGGTCGAGTAAAAGACGACAGAATCGTTACATGTCAAGTAAAAGCGACAGGCAAAGCTTCATGCATGAATTCAGTGATGTGGAAGTACCTGCTCTTTCCATGCTCTCCTTCTCAGACAGGCATCGGACTGAGTTCTTGACTGAAGACGCTCCTTGAACACAACATTGGTCAGGCATGAGACACaaacaaaaagggaaaaaatgacTACTGGGGCCACTGATTAAGGGGATGCTTACATATGAATACAATGCTAAAAGATATTAAGAACACATGTACTATGAgttgtattatttcattaaaattcatagatttttttatta

Function

symbol description
rbm45 Predicted to enable RNA binding activity. Orthologous to human RBM45 (RNA binding motif protein 45).

NR:

description
RNA-binding protein 45-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K25081 RBM45; RNA-binding protein 45

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249767.1 False 1914 mRNA 0.52 10 4709053 4716912
XR_006251862.1 True 2110 transcript 0.51 11 4709053 4717233

Neighbor

gene id symbol gene type direction distance location
si:ch211-222f23.6 LOC107657380,LOC107716910,LOC107571834 coding upstream 2916 4702686 ~ 4706137 (+)
agps agps,LOC107725825,LOC107657345,LOC107671268,LOC107716908 coding upstream 98075 4576182 ~ 4610978 (+)
hnrnpa3 hnrnpa3,LOC107657386,LOC107600707 coding upstream 153304 4547501 ~ 4555749 (+)
hoxd3a hoxd3a,hoxd3,LOC107716912,LOC107600705,LOC107657387,LOC107725818,LOC107671318,LOC107588224 coding upstream 285713 4417288 ~ 4423340 (+)
hoxd9a hoxd9a,LOC107657361,LOC107588260,LOC107600753,LOC107725811 coding upstream 307981 4398723 ~ 4401072 (+)
osbpl6 osbpl6,LOC107670309 coding downstream 3322 4720555 ~ 4772214 (+)
cmklr2 LOC107752611,LOC107670314,LOC107560810,LOC107689523,LOC107747228,LOC107670312,LOC107561727 coding downstream 108145 4825378 ~ 4829866 (+)
LOC122351440 ino80d,LOC107747229,LOC107752578,LOC107670308,LOC107561721 coding downstream 123705 4840938 ~ 4853139 (+)
LOC122351196 sctr,LOC107549745,LOC107747236,LOC107752604,LOC107670318,LOC107560812,LOC107689516 coding downstream 275080 4992313 ~ 5006796 (+)
LOC122351173 LOC107670300,LOC107720934,LOC107576887,LOC107549889 coding downstream 341330 5058563 ~ 5059629 (+)
G67752 LOC107600734,LOC107683095 non-coding upstream 23872 4677450 ~ 4685181 (+)
LOC122351246 NA non-coding upstream 133528 4572574 ~ 4575525 (+)
G67680 NA non-coding upstream 304843 4351701 ~ 4404210 (+)
G67684 NA non-coding upstream 352240 4355005 ~ 4356813 (+)
G67657 NA non-coding upstream 500512 4207690 ~ 4208541 (+)
G67769 NA non-coding downstream 61124 4778357 ~ 4780535 (+)
G67782 NA non-coding downstream 106193 4823426 ~ 4823776 (+)
G67812 NA non-coding downstream 152952 4870185 ~ 4870882 (+)
G67826 NA non-coding downstream 182252 4899485 ~ 4954081 (+)
G67865 NA non-coding downstream 282695 4999928 ~ 5011204 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other upstream 146451 4523286 ~ 4562602 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other upstream 295893 4409895 ~ 4413160 (+)
G67630 NA other upstream 486882 4141054 ~ 4222171 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other upstream 582040 4120527 ~ 4127013 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other upstream 723091 3981346 ~ 3985962 (+)
c9h2orf76 zgc:101851,cunh2orf76,LOC107670315,LOC107747242,LOC107560816,LOC107752580,LOC107549781,LOC107689495 other downstream 298237 5015470 ~ 5018338 (+)
LOC122351471 NA other downstream 308330 5025563 ~ 5028639 (+)
ndufb3 ndufb3,LOC107752587,LOC107549774,LOC107549916,LOC107689503,LOC107720946 other downstream 422912 5140145 ~ 5142152 (+)
trnar-ccu_4 NA other downstream 687996 5405229 ~ 5405301 (+)
trnar-ccu_5 NA other downstream 688670 5405903 ~ 5405975 (+)

Expression


Co-expression Network