LOC122351188


Basic Information

Item Value
gene id LOC122351188
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16605367 ~ 16631420 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251709.1
GAGATGCTATGTAGTTAAACCCAAGGCAGCCTGTGGATACAACACTTCCAGCATGACACTCGCAGAGAACGGCAAAAGCTCagcctcaaacacacacacacacacacacacacacacacacacacacacacacacgcacacacacacacacacacgcacacacacacacatataacagCAGATCTCAACAGGATACTGCAGTCAGTCACAGGCACATGAACACTGGAGGAAATGGAGTGACAAGAAAAAGGAAGACACAAATCACATCGTGCCATGTGTGCAGAGAAACAGATTGTCCGCTATCAGCGGTGATGGTGCGCGGAGGAAGAAATACGAGCATGCAGCGAAGTCAAACAAAAGTGCCCCTGTAGATGAATATTCCCGAAACAGTACTAGATGGACTTTctaaaacaaaatcacacagTCATTCTGCACCGGCTTATTCAGACAGGCTCCATCTATTCAGATCATGTGATGCTCCATGTCTTCATTTCAATTTAGGCGCTGGGGACGGCTCAAGTGGACGAGTGCTGCCAGCGGCTTGTTAGGGTGCTCATGAGGTGCTCAGTAGTCAGTGTAGATCCTGTGTTGCAATCAGCAGCTACATCTGGCTACTGGGTCTCTGATGGCATTTTCTGCTTCCTGTTGGCACATTCCTTTCAGATTGTGTGGTATGTTATCACAATGTGTGCCTCATCCTGTCAGAATAGGACTCGCTCTTTCATGGACGTTAAAGAGGGCTCTTGTCACAACACCCCTCTTCGACCAGAGCGATTTGGTAGAGCTTTTGCACTTTTAGCCTAGTTTACTGTgggcttttccttttttattttcttaaataaatttaatcaaGGTGAGTGAACTGTCAAAGTGGAGCTAAAAGTCTCGGGAACCCATTTCAGACGTCTTTGAAAGAAAGGATTGAGACATTGTTCCTTGTTTGACTGCTGAAGATTCAGTTTAAGTGATTAGGTAACAAAGGACAAGGCGACATGTCACATTCTCTTTGTGATTTGCCTGTCACAAGGGGCTGTctttgtgcaaatgtttttgaGTTGTTGAAGGCTGACAAATAATTAGAGTTAAATGCGCAGACATGCTGAATCGCATTGGTTTTGGGGAGCGAAGGATGAATTCTTTTGTGTTGTCGTGAACCTGGCATACAATGTAGATTTCTGTGTGGTACAATCTACAGCTACATTGTCTGCTGGGTTTCAGGCCAGCAGAAAAATCCTGCTCTGCTCAGAAATTGAAAAGGTGAGTCGTTAAGATGTTACGCATGCTTGAAAAAGACTTATTCCTACTATGAGAATACAATAAAAGTACTGAAAGTATAAAAA
>XR_006251710.1
ACTCTCTCTGTGACTAACAACTAAAATATGGCAGTTTAAAAGAAGTTTCAGTGGTGCTCCAGTTCCATAGGGTTGTGGAACGAGAGAGATGGACAGGTAGAGTTGTCATTTCTTCCAGGTCTCTGCATATCActttctttcgttctttcttttatttcactgGAAAGGTGAcgctgtgaaatattaaacagccGAGTGTCCCTCTGTGGTGTCGGGTTTCCCACAGCTGATGAGAATTCAGGTACTTTCTCCAAGATGGAGAATTAGGGTTTTATGAAGAAGATGAGCAGGGATGAGTCAAAGCAGCATTTCTGAAAGCTGGAACTGgatcaaaaatcttttttaacacattttaatacattatcaCAACAATTATGATAGGGGGACATTTGTATTTGAACTAATGTTAGTATATAAGACATATAAGTCcttaaaaaattcttatttggACTAAAGCTTTAGTTTGCCTATTAAAAATGTCTCgattaaatcttatttaaaagaCAGATTTATCCAGTTGTATTGACTGTTGATTATAATTTGATTCTAAGTAATATCAGTTTGTTGAGACTCTCAAGAGGTTTGTTTTATGTCGTCACGAAAGGCATGCTTATTTGACATTGGTGGACCCGTTTAGAAAACGTTTAGACTGGTTGGTACAGAGCGAATTCTTCACTGAAAGACACTAACGTTCCTCGGTCACATAAGTAGGGGAGTTTCCTGCTCCTAAAGATCGAGGCGTTTTTCACCACGACTGCcggcttttctctctctctcccttcctctctttcgctcccttctttttttctgaatgggTGTCCTCTCTCTAACCTCTCAATTCACAGCAGCATTGAAACAGGACACTACCCTGAACACTGATAGGCTGCGGCTAAATCGCTCAGCCCCTCAACCCGACACTATAAGTACTCTGGCAGTCCGTCTCCAGTGTATGACTGACTGTttagagggagagagggagagatagaaTGGGAGGGGGTGGTAGAGAGTTTAAATTCAGTGACAGTGATAACAATGATATTATTCGTTCTTCGCTGAAACGGGGAAGCACTTTCAGCGTCTACGGCACGCTTCCTCTGTCTCTATCGCTTTAAGAGTGTTACTGATTAGTCACTAAAGAATGCgagtggaaagagagagagaaaagggacAGAGTCAGAAGGGAGAGACAGACTGAGAGCGTTCGTGCCTGGAACTCGTATGGAGAAGACTGATAATGCTGAGCTGAGtagagttttgttttattttccagcagTTCGGAGACGTTAATGGAGCTctcacactgtgtgtgtgtgtgtgtttgcggcTCCTGAAGACGAAGGGGGAAGTCGGGGACCCCGCACATGCAGGCAGCACTCAGCCATCAGGAAATACTCTTTTCACCCAGACAGAGCTTATTCAGACAGGCTCCATCTATTCAGATCATGTGATGCTCCATGTCTTCATTTCAATTTAGGCGCTGGGGACGGCTCAAGTGGACGAGTGCTGCCAGCGGCTTGTTAGGGTGCTCATGAGGTGCTCAGTAGTCAGTGTAGATCCTGTGTTGCAATCAGCAGCTACATCTGGCTACTGGGTCTCTGATGGCATTTTCTGCTTCCTGTTGGCACATTCCTTTCAGATTGTGTGGTATGTTATCACAATGTGTGCCTCATCCTGTCAGAATAGGACTCGCTCTTTCATGGACGTTAAAGAGGGCTCTTGTCACAACACCCCTCTTCGACCAGAGCGATTTGGTAGAGCTTTTGCACTTTTAGCCTAGTTTACTGTgggcttttccttttttattttcttaaataaatttaatcaaGGTGAGTGAACTGTCAAAGTGGAGCTAAAAGTCTCGGGAACCCATTTCAGACGTCTTTGAAAGAAAGGATTGAGACATTGTTCCTTGTTTGACTGCTGAAGATTCAGTTTAAGTGATTAGGTAACAAAGGACAAGGCGACATGTCACATTCTCTTTGTGATTTGCCTGTCACAAGGGGCTGTctttgtgcaaatgtttttgaGTTGTTGAAGGCTGACAAATAATTAGAGTTAAATGCGCAGACATGCTGAATCGCATTGGTTTTGGGGAGCGAAGGATGAATTCTTTTGTGTTGTCGTGAACCTGGCATACAATGTAGATTTCTGTGTGGTACAATCTACAGCTACATTGTCTGCTGGGTTTCAGGCCAGCAGAAAAATCCTGCTCTGCTCAGAAATTGAAAAGGTGAGTCGTTAAGATGTTACGCATGCTTGAAAAAGACTTATTCCTACTATGAGAATACAATAAAAGTACTGAAAGTATAAAAA

Function

GO:

id name namespace
GO:0016592 mediator complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251709.1 False 1340 lncRNA 0.44 5 16605367 16631420
XR_006251710.1 True 2313 lncRNA 0.43 3 16605367 16617024

Neighbor

gene id symbol gene type direction distance location
dipk2b si:ch73-147f11.1,LOC107756741,LOC107695496,LOC107595885 coding downstream 21306 16579731 ~ 16584061 (-)
fundc1 fundc1,LOC107673665,LOC107748200,LOC107565940,LOC107695457,LOC107595886,LOC107756742 coding downstream 64716 16538368 ~ 16540651 (-)
efhc2 efhc2,LOC107673658,LOC107756743 coding downstream 67292 16526525 ~ 16538075 (-)
LOC122351145 ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887,LOC107565935 coding downstream 89923 16509560 ~ 16515444 (-)
mao mao,LOC107748155,LOC107673703,LOC107565948,LOC107595828,LOC107695498 coding downstream 100440 16477543 ~ 16504927 (-)
slc35a5 LOC107748197,LOC107565955,LOC107673679,LOC107756781,LOC107695476 coding upstream 63334 16694754 ~ 16698639 (-)
LOC122351201 nxpe3,LOC107748146,LOC107673677,LOC107597504,LOC107695470,LOC107756776,LOC107595812 coding upstream 120583 16752003 ~ 16760172 (-)
LOC122352097 me3,LOC107748144,LOC107595810,LOC107695468,LOC107756775,LOC108426042,LOC102313335 coding upstream 130453 16761873 ~ 16767185 (-)
grtp1b grtp1b,LOC107748194,LOC107695480,LOC107673704 coding upstream 267243 16898663 ~ 16902174 (-)
ppp2r3b ppp2r3b,LOC107673721,LOC108426065,LOC107748139,LOC107695472,LOC108266308 coding upstream 306864 16938284 ~ 16954349 (-)
G70894 NA non-coding downstream 485048 16118282 ~ 16120319 (-)
LOC122352066 NA non-coding downstream 651391 15948113 ~ 15953976 (-)
G70660 NA non-coding downstream 842698 15762383 ~ 15762669 (-)
G70633 pikfyve,LOC107719798,LOC107681306,LOC107731754 non-coding downstream 961091 15642259 ~ 15644276 (-)
LOC122351574 NA non-coding downstream 966931 15628883 ~ 15638436 (-)
G70962 f5,LOC107756778,LOC107748149,LOC107565953,LOC107673674 non-coding upstream 81399 16712819 ~ 16713846 (-)
G70966 gpr161,LOC107695469,LOC107756778,LOC107595811 non-coding upstream 84102 16715522 ~ 16717084 (-)
G70965 NA non-coding upstream 88095 16719515 ~ 16720573 (-)
G70979 NA non-coding upstream 119615 16751035 ~ 16751938 (-)
G70991 NA non-coding upstream 195638 16827058 ~ 16829659 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other downstream 833503 15771421 ~ 15771864 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 1205930 15389218 ~ 15399437 (-)
G70549 NA other downstream 1299392 15303103 ~ 15305975 (-)
LOC122351495 NA other downstream 2232693 14359646 ~ 14372674 (-)
G70317 NA other downstream 2351591 14196479 ~ 14253776 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 89384 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 185720 16817140 ~ 16823775 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other upstream 255333 16886753 ~ 16889547 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 604452 17235872 ~ 17255491 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other upstream 732767 17364187 ~ 17521560 (-)

Expression


Co-expression Network