LOC122351283


Basic Information

Item Value
gene id LOC122351283
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 2083592 ~ 2086178 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251725.1
ttgactattttgAGTGGAGctaaaatcatttcaaaagcACCATGTAGTCTGCATCCACTGAATGAAATACTAGGTATACAGTTTTTGTTATATCAATCATttgatgcattatatttttgtatgtgacagttttaacaaaaacgtattgtaaaaaaaatggtagcAGGGGAAAAGCAAACATTAATGTCACTGAAAATGTTGAACATGAACCCTAACCCTAAGATTTATTCAGTTAGTAGTCTGTTTTATCTTTGATTCCGGCAGCTGGGACAAGAGCAGTAACCCTGAACCCTGGAATAAACTCAGTCCAAGCTACCAATATAAGTTTGTGGCCATTAACACAGACTACAAAAACCTGAAGAAGGAAGGACCAGACTTCTGAACATTTCACGGTTGTTGCTCAAGTACTTTAATTATGAAGATGCTGATATGCCCTTGCACCTCACTATTCTAAAGTTTttacacaaatgtgtgtgtttttaggaaAAAATGATATCCTCACAAACGCTGATAGACATATTCATTAGCATGAGATGAAAAGCGGAATAAAAACTAGACtagcttttcttttgtttatgcGCATTAGATGTTAAGCTTTCTAGAAATCCCCAAAACTGCAGAGATAACATGACCTCTCTCTAGTGAGCATGAGAAAGGGCGAAAGGAAGACGAGCAGATGTAAACAGAACCTGAACAGCACAGACTCATGGGAAGGAGATCGAGCTCCCTCAGGACTGCTCTTCAGCTGTTTAGAATGACACATGGAGAACAACACACAGATATCTTTGTCTCTCTCACTAGCTCTATATCTGCACTTATTATTGTAACCAACTATCATCATTCATCTTCACGTTTTTTAGTACTGGCAAGGCATACAGACAAACACAGGAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251725.1 True 894 lncRNA 0.37 2 2083592 2086178

Neighbor

gene id symbol gene type direction distance location
ndufa4l2a ndufa4l2a,ndufa4l2,LOC107678808,LOC107571901,LOC108434410,LOC100690915 coding upstream 217985 1861809 ~ 1865607 (+)
LOC122351375 ccdc148,LOC107568893 coding upstream 395123 1660010 ~ 1688469 (+)
LOC122351663 NA coding upstream 767697 1299556 ~ 1315895 (+)
LOC122351657 LOC107746587 coding upstream 844569 1231173 ~ 1239023 (+)
LOC122351655 LOC107700959,LOC107700956,LOC107558461,LOC107711456,LOC107733036 coding upstream 1004345 1067017 ~ 1079247 (+)
LOC122351505 LOC107734497,LOC107657409,LOC107548806,LOC107685428,LOC107745260,LOC107567977,LOC107657408,LOC107734493 coding downstream 59327 2145505 ~ 2201714 (+)
LOC122351218 cytip,LOC107745276,LOC107567979,LOC107685429,LOC107734494,LOC107657378,LOC107548784 coding downstream 168379 2254557 ~ 2258615 (+)
nr4a2a nr4a2a,LOC107657406,LOC107734489,LOC107745273,LOC107572156 coding downstream 408303 2494481 ~ 2499298 (+)
pou1f1 pou1f1,LOC107561319,LOC107688653,LOC107661330,LOC107551978 coding downstream 812985 2899163 ~ 2908133 (+)
vgll3 LOC107561316 coding downstream 840188 2926366 ~ 2930420 (+)
G67071 NA non-coding upstream 180409 1895482 ~ 1903183 (+)
G67057 NA non-coding upstream 304382 1778914 ~ 1779210 (+)
G67048 NA non-coding upstream 314004 1769380 ~ 1769588 (+)
LOC122352111 NA non-coding upstream 388063 1693724 ~ 1695529 (+)
G67023 upp2,LOC107699962,LOC107568900,LOC107568899,LOC107653244,LOC107579388,LOC107569728,LOC107751513 non-coding upstream 391116 1688655 ~ 1692476 (+)
G67065 NA non-coding downstream 104 2086282 ~ 2086805 (+)
G67097 NA non-coding downstream 45784 2131962 ~ 2132396 (+)
G67187 NA non-coding downstream 555441 2641619 ~ 2654476 (+)
LOC122351269 NA non-coding downstream 831664 2917842 ~ 2924636 (+)
LOC122351258 NA non-coding downstream 869166 2955344 ~ 2957198 (+)
bpifcl bpi other upstream 347272 1713812 ~ 1736320 (+)
G66795 NA other upstream 948603 1127526 ~ 1134989 (+)
LOC122351650 si:ch1073-55a19.2,LOC107670647,LOC107709149,LOC107686982,LOC107559216,LOC108440489,LOC107686979,LOC107709150 other upstream 1184213 858680 ~ 899379 (+)
G66727 fam126b,LOC107700963 other upstream 1278583 797133 ~ 805009 (+)
G66657 NA other upstream 1621563 459574 ~ 462029 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other downstream 1108595 3194773 ~ 3196618 (+)
LOC122351398 dnajc15,LOC107549910 other downstream 1176429 3262607 ~ 3280052 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other downstream 1827460 3913638 ~ 3922878 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other downstream 1861858 3948036 ~ 3983582 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other downstream 1895168 3981346 ~ 3985962 (+)

Expression


Co-expression Network