LOC122351427


Basic Information

Item Value
gene id LOC122351427
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10930480 ~ 10946744 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251755.1
ctgtatatacatattaaatatacactgttcacacacatatattatgtaaacattttatttatttatttttattttggatacgattaatcatttgacagctttaatttatatatttttagagctGAGGGATTTTTGTGCCAGATATCTTATGACTGATACTTtgagaaatgaaaaattatgGGATCCAAAACAACACTGACTTTTCTTATATGAATAAAAGCGTGTAAACAagctttgaaatataatttgtgttcTTCAATAGAAATACGTCATAGAGGTGATagcataattttcatttcataattcatcatttttataggttgaactatcactttaaatagTTCAGTGTAGCTCCTTTTTAGTCACatttaactgctttttttttttaaaaatggcttgaCTGTACTTAATTGCTTTGTATCTTGCATAGCTACTATGGACTCATGGTTTAGTTTCTAAGTAGGCACTCAAACACTAGTGTATGTAGAAAAATTGAACGATCATATTTGTATGCATAGAAATTTCAGTCTGTTGCTGTTTGCTTTGACTGTTTgcctgtgtatgtgtttgtgcttgTTTACCAACagatgtttgtgcatgtgtgtgtgtgtgtgtgtgtcagtgttagCGTGTGGGAGCATGTCATCTGGGTACACTgatacacagacacacgcacacacatgcccTGTGTTGGCGCCCTGTGCTTGCAGTCGGATGGCGTTTGAGCTGGGGCCAGGACAAAGCTGTGCACTGGTGGACTGTCACTCCAGCTTAAATCTGCTCCCTGATCAAAGCCCTCCCCCCTCAGAGCTGGTCATCGCCCACCCCCCACCTCCCTTCGCCTCTCTCCTCTTCCCAACCTTGACTCTTGACTCCAAGCCAGACGCTGGGCCACCGCGCCACCACGGACATGCGGCCTGGCACTTTGGAGAAAGAGGGCGAAAGATCGTACTGCGAGATAGACGGGATGCTGATGGTCCCGTTGAGACACGTTCTTTATGAAGTCATAAAAACGAACGCTACGGGCAGACTGTTCATCTATTAGAATGACCTTCTTTTTGATGATCGGCCCTTGTCAGCGGTGATTTTTACTGCCCAGGAGATAGCACTTTCCCATTCAAGTTTGGGCAAGTTTGGGTCTGTATGGAGGTTACTGGGGTCAACAGTGCAGGGATTGGTCTTTCAATAAGGGAGCCATGGCAACAACACACAGCATGTTAGCTGCCAGGTATCGACCTCAATAACTGGTGGTGCACCTTTAAAAGCTGCTGGAGCCCTGGCCCAGGAGCGGCTTAGATCAAAGGAGCAGTCCATCAATATCATCTTGACTGTCAGCCCACAGAGCACCGATATACTCAGGTGGActaaagaaatgaagaaagaatGAGTGACAAATGGGAAACGGATCAAAGAATGCTGTTTTTACATAATAGTGAAAGACAttgcattagtttttttcttaatcCAAGTTATCCAATTTCAAGTTATTTTTGGGTAAATCATAAAGGTCAGTTCAAACAAAACAGTCAAGACTGGATTTAAAGCTCTTGTTGTTTAATCACTAGCATGACCTGCAACCCACCCAGAACATAGGTGTTACACGAATCGGTAAAGATCTCAGGCGGACCACTGCTTCAGGTATCGACCAAATGCTGCTGTTCACATCGATAACCACTGCAGTCCAGCCGAGTGTCTCTGGAGCTGCACAAACGAGGCAGATAAAGAACCGCTTTGCTCATCTAAGCTTGTTTCCTTCGACACACAGCATTTCCCATGCATTACTACTGCTTCTCTGGAACAAAGTTCTTGCATTATGGTTTAAGGTGAAAAATTGATATTTCTAAGGTGTCTGTTACGAAGTTGAGCTGTTTTTTTCAAACCATATTAAGTTAGGCTGACTCGTTACATTGCTGCAAGACAGGCTGATGCAAACctgtaaataaatacttcaGCACACCCTGATTTAGCAAAATAAGGCATGTTCTAAGGTCAACATGTTTTGCTGATACTGGAATAAAAtcctgtaaaatgttttaacccAATATATTTACCCATAACCCAAACCCCTACGCTTAAACCAGGGGTGCTTATTGCTGCCCCTGGAAGGCAATTTTTTTAGCTCTAACCCAGTTAAAGATCTAGCAATCAaggttttaaagatttttagaaATTCCCAGACTGGTGTGTTGTTGTAGACTGGTGCCCTCCAGGTGCAGCGACATTACTGGTGTATAGCGTAaccataaaaactaattaattgtCATGAATGTTGTTCAATCAACATGCCATGCTACTTTAAAATTGTTAGGTAGAATTGAAAAGGTTAAGAAAGTTACCATTTCAAAACCAGACCATGTCAGATGCCTTGCGGTTTTAATTAGTGGGTGATATGAGCTAGAATTAATATCACAGTATTTTCCACTGTCCAAACGCTATCGCTATATTATATCGCGATATGATAGAAAAAAATTGGAATCACATTTTAGTTAAATTGCaggcaaaatatgtattttaacctTACATAACCAAGAAAACCCATATGATTTCAAGA
>XR_006251756.1
ctgtatatacatattaaatatacactgttcacacacatatattatgtaaacattttatttatttatttttattttggatacgattaatcatttgacagctttaatttatatatttttagagctGAGGGATTTTTGTGCCAGATATCTTATGACTGATACTTtgagaaatgaaaaattatgGGATCCAAAACAACACTGACTTTTCTTATATGAATAAAAGCGTGTAAACAagctttgaaatataatttgtgttcTTCAATAGAAATACGTCATAGAGGTGATagcataattttcatttcataattcatcatttttataggttgaactatcactttaaatagTTCAGTGTAGCTCCTTTTTAGTCACatttaactgctttttttttttaaaaatggcttgaCTGTACTTAATTGCTTTGTATCTTGCATAGCTACTATGGACTCATGGTTTAGTTTCTAAGTAGGCACTCAAACACTAGTGTATGTAGAAAAATTGAACGATCATATTTGTATGCATAGAAATTTCAGTCTGTTGCTGTTTGCTTTGACTGTTTgcctgtgtatgtgtttgtgcttgTTTACCAACagatgtttgtgcatgtgtgtgtgtgtgtgtgtgtcagtgttagCGTGTGGGAGCATGTCATCTGGGTACACTgatacacagacacacgcacacacatgcccTGTGTTGGCGCCCTGTGCTTGCAGTCGGATGGCGTTTGAGCTGGGGCCAGGACAAAGCTGTGCACTGGTGGACTGTCACTCCAGCTTAAATCTGCTCCCTGATCAAAGCCCTCCCCCCTCAGAGCTGGTCATCGCCCACCCCCCACCTCCCTTCGCCTCTCTCCTCTTCCCAACCTTGACTCTTGACTCCAAGCCAGACGCTGGGCCACCGCGCCACCACGGACATGCGGCCTGGCACTTTGGAGAAAGAGGGCGAAAGATCGTACTGCGAGATAGACGGGATGCTGATGGTCCCGTTGAGACACGTTCTTTATGAAGTCATAAAAACGAACGCTACGGGCAGACTGTTCATCTATTAGAATGACCTTCTTTTTGATGATCGGCCCTTGTCAGCGGTGATTTTTACTGCCCAGGAGATAGCACTTTCCCATTCAAGTTTGGGCAAGTTTGGGTCTGTATGGAGGTTACTGGGGTCAACAGTGCAGGGATTGGTCTTTCAATAAGGGAGCCATGGCAACAACACACAGCATGTTAGCTGCCAGGTATCGACCTCAATAACTGGTGGTGCACCTTTAAAAGCTGCTGGAGCCCTGGCCCAGGAGCGGCTTAGATCAAAGGAGCAGTCCATCAATATCATCTTGACTGTCAGCCCACAGtGCAGTGCTTCAGCCTGGTCAGTGTGATCTACAGTAGAAGAGGCGAGTAATACTgctatattttacagtgtacattACTTTCTTCGACACAACAATTATGGAGATGAGATTTTCATCTATGCGTTCCAATTGCCTGACTGTGTTTTCATATTAACGGCATATTGATCTCAGATTGCTGGAGCATGTTATTTGGCTAGATACATAATGGCCATCATGGCTCCATTTCTATTGCAATGGTGTCATCTGTTTTCTGAGATCACAAGACTGGTAAATGCAGGTTTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251755.1 True 2551 lncRNA 0.40 3 10939979 10946744
XR_006251756.1 False 1626 lncRNA 0.42 3 10930480 10946744

Neighbor

gene id symbol gene type direction distance location
zgc:162396 zgc:162396,LOC107551942,LOC107733630,LOC107663909,LOC107568094 coding downstream 94510 10833262 ~ 10835970 (-)
zgc:162780 zgc:162780,LOC107551941,LOC107566157,LOC107738501,LOC107733635 coding downstream 97364 10829914 ~ 10833116 (-)
LOC122351611 LOC107733620,LOC107663814,LOC107555196,LOC107720141,LOC107600416,LOC107655476 coding downstream 321089 10606194 ~ 10609391 (-)
uggt2 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC108266228 coding downstream 371901 10531653 ~ 10558579 (-)
rnf17 rnf17 coding downstream 426014 10487697 ~ 10504466 (-)
fzd5 fzd5,LOC107551950,LOC107733649,LOC107698527,LOC107598163,LOC107738508 coding upstream 94548 11041292 ~ 11045462 (-)
plekhm3 plekhm3,LOC107733641,LOC107551948,LOC107663884,LOC107598165,LOC107698528,LOC107738519 coding upstream 104350 11051094 ~ 11085910 (-)
idh1 idh1,LOC107663883,LOC107698523 coding upstream 142926 11089670 ~ 11096681 (-)
armc8 armc8,LOC107598169,LOC107551954,LOC107733643,LOC107663904,LOC107738509 coding upstream 246949 11193693 ~ 11204968 (-)
rab5b rab5b,LOC107551955,LOC107738511,LOC107598172,LOC107698530,LOC108430508,LOC108266395 coding upstream 263456 11210200 ~ 11216654 (-)
LOC122352018 NA non-coding downstream 21886 10849823 ~ 10908594 (-)
G69346 NA non-coding downstream 86440 10837512 ~ 10844040 (-)
G69231 NA non-coding downstream 483713 10445277 ~ 10446767 (-)
G69228 NA non-coding downstream 485839 10444293 ~ 10444641 (-)
G69223 NA non-coding downstream 504015 10426227 ~ 10426465 (-)
G69362 NA non-coding upstream 300 10947044 ~ 10953985 (-)
G69396 NA non-coding upstream 82633 11029377 ~ 11030493 (-)
G69467 NA non-coding upstream 412206 11358950 ~ 11365819 (-)
LOC122351998 NA non-coding upstream 844037 11790781 ~ 11954234 (-)
G69596 NA non-coding upstream 1138970 12085714 ~ 12156439 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other downstream 243853 10680158 ~ 10686627 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other downstream 411023 10515272 ~ 10519457 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other downstream 486861 10433507 ~ 10443619 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 1020302 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 2835633 8076468 ~ 8094847 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 449922 11396666 ~ 11493120 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 550203 11496947 ~ 11500495 (-)
gtdc1 gtdc1,LOC107709416,LOC107555857,LOC107563182,LOC107675364,LOC107673117 other upstream 1144387 12091131 ~ 12194961 (-)
G69650 NA other upstream 1475685 12422429 ~ 12423446 (-)
lrch1 lrch1,LOC107709425,LOC107601076,LOC107673127,LOC107724026 other upstream 1571540 12518284 ~ 12582425 (-)

Expression


Co-expression Network