LOC122351843


Basic Information

Item Value
gene id LOC122351843
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10175048 ~ 10179380 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251805.1
aaatgctccaacatcttggagaactaaccacagatcttctgtggatgtaggctttctcacatccttctgtctcttcatgtaatcccagacacactcgatgatgttgagatcagggcACTGTGGTCCCACTGGTTCTGAGCTGATGGCATTGATGGACATCTTCCGATTTCGAAGGGTAATAAGCTtgatgtgtctttcatctgctgcactaaGTTTCCTGGCCCGACCACTGTGTCTACGATCCTCAACGTTGCCCGTTTCTTtggtgcttcttcaaaagagcttgaacagcacatcttgaaaccccactctttgaaatctttgtctgggagagaccttgttgatgcagtataactaccttgtgtcttgttgctgtgctcaatcttgccatgaaactgtctttcacaacctcTCCGTGGGAGCAGAGTTTGGCTGTACTTAGTACTAGCCAATACCTGGCTACACATCACAGCACTTTCACTGTTGCACAGTATAGAACTCTTTTAGctaagttttgatattttactgTCAAAGAATGCAATAATACATAATAGTAATATAGGTTTGGTAATGTTGAAAGTGCACAATATTTTAAGTGTTCTGCATCATTTTATATCACTAATGTGAAACCTGGCCACAGTGTTTATTACTTGTAGTGTCATGcgttgaatattaaatatatgttagtaacattttaaaatctgttttgaccctataatgcatgttaattaattagtaataaacattttagcttTGAAAGCGAAGGATGCAAAGAGACAGACAAAAGGGGACAAAGAGGGTCAACAATGGTAGCATTTTAACAAGATCTGAACAATCTGATGACGGGCTTCAGTGAAAAAACCTGTGAAGTTTCTTCTCGACAGGTGAGTTAACATGGACTTTGATTAAACTTCAAATAAACCGTTTATTAAAAGTAGTCTACTTTTACCTGTTGAGACTTGCCCTTACTTTTAGATCAATACAATCTGTGTTTGTGGTGTTTAAGCAGAGAGAGGATAATTAACGAAAAGGGCTCTCCTTTGCAAAAGTGAAAAACCCCTGCTGAAACCAGCCAGGCTGGCAGACCAGTCCTTCCAGATttaaccagctaagaccagcctACCAGCCTAGTCTGGTTTTAGCTGATTTATTTCAGCATagaatttgctttatttttgtagttcGCTAGAAGACACTAGTAGCACAGAAACCGTCCGCTCcacctttaaaagaaaaataatccaGGCATGAAATAAAGCAACAGAATATCAGACTGCAGCATGACATGCCACTCTACTGACACTGGCGTGAAAATGTAAACCAGAACAAAGCCCAGGCCTGACACACATTTAACGCCTTTGGGATGAATTGGATTGCTGACTGTCCGTGTCTGACCTCACGGATGAATGGGACCAAATCCCCGCTGCTGTTCCAACACACAATAAACCATCTTTACACGAAGAAGCTTATACAGAGAACTGGCACCTTATAATGTCAATGTGTatgcttttaattattattaagaaatgcTTTGAAAACAAGCACCGACGTGTTTGAGAGGATTGTTTTCGGCCATCAGTTTACCGAGCGTGTTCTTCGTGACGCTAGATGGCGCGCGCTACCTTGATAGACACGCGCTTCATAAAGAAGAAGAGCGCGCGACTTCCTGCGAGTGGCGGAAGTTTTTGATCGAGGAATATAATCCCAATATTCatgtgcttgttttctgttctgCAGCCGAAATGTCTTCGCTCACCATGCTCTACAGTTTAAATTGACTCCGGAACTTAAAAAaAATGCCACATGAAAAAAACCGTAGCAGCCTTTTTTCTAACGCCTGTCATTTTCCCTGGACCGGAGGAGAGCTCTGACCCTCTCACCTGAGATCAAACGTGACAGCTTCCAGACCGAAAGTCCTCTTAAGATCCCCAGGAGAGTGCCCACAGCTGAGGATGAGTGTGTGGATACAGGGAAGGTGACTATGATTTGTTGACAAGACTTTTTACATTTgagacatttaaaaactgcatacagcaatatgataaaatacatcataaaataCAGTGTTCAATGAAATGTTCAATGAATGCTTATTAATAGAATTAggaaaaaacattctttaaccTAACTGTTTAGTTTATTGTTATAACTATACTGCCACCAggcattgaatttatttgacaTATATTAACAGAGaacatgtgtttatttgttttaggatttattttatatttttttctgttccagCGAACAGTTTTGACTACTGGAAACCTCAGTTAGCAATTCTGTGCTCTTTTAAAGTTTTGGTAATTTCTGATTGGCTTTGTTTTCTGTACTGCTAGATCCACTGGACACAGTTTGCCTCAAATGGTACAGCATCCCAGTCAGATCCAAAGTCACAAAAAAACAGTGATCAAGAACATACCGTATGGCAGGAAATCCGCAGGCGTCAGGTTAAGGTGGTTTTAGAAGATGTCCTTCATACAGAGATCGGGCAGAGATTGCTGAGATGTGGCGGGCAGAGTTTCCAAAAGTCAGAGAGCAAAAGACCGAGTGATCGCATCGCAGCAGCTGAGCTCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251805.1 True 2582 lncRNA 0.41 4 10175048 10179380

Neighbor

gene id symbol gene type direction distance location
mid1ip1a mid1ip1,mid1ip1a,LOC107655494,LOC107748224,LOC107663855,LOC107555231,LOC107600390 coding upstream 8626 10165180 ~ 10166422 (+)
otc otc,LOC107555229,LOC107663890 coding upstream 12112 10160341 ~ 10162936 (+)
sytl5 sytl5,LOC107555233,LOC107663897,LOC107748209,LOC107655524 coding upstream 35803 10117861 ~ 10139245 (+)
asb11 asb11,LOC107748226,LOC107720119,LOC107655497,LOC107600386 coding upstream 57500 10113994 ~ 10117548 (+)
gja8a cx50.5,LOC107748212,LOC107555237,LOC107720117,LOC107600427,LOC107655525 coding upstream 88087 10082276 ~ 10086961 (+)
impg2a impg2,LOC107748205,LOC107655518,LOC107600387,LOC107720123 coding downstream 6366 10185746 ~ 10200828 (+)
LOC122351607 abi3bp,LOC107748202,LOC107655519 coding downstream 29469 10208849 ~ 10226652 (+)
dcbld2 dcbld2,LOC107600392,LOC107655516,LOC107706081 coding downstream 82998 10262378 ~ 10279903 (+)
LOC122351198 LOC107706096,LOC107663847,LOC107663844,LOC107555219,LOC107706098 coding downstream 222965 10402345 ~ 10405495 (+)
LOC122351200 LOC107663844,LOC107555219,LOC107706096,LOC107706098,LOC107663847 coding downstream 226603 10405983 ~ 10408038 (+)
G69042 NA non-coding upstream 66864 10107840 ~ 10108184 (+)
G69034 NA non-coding upstream 104157 10070658 ~ 10070891 (+)
G69033 cx45.6,LOC107663873,LOC107748213,LOC107572527,LOC107655501,LOC107720145,LOC107600426 non-coding upstream 112612 10062208 ~ 10062436 (+)
G69032 NA non-coding upstream 113161 10061685 ~ 10061887 (+)
G69031 NA non-coding upstream 113437 10061058 ~ 10061611 (+)
G69089 NA non-coding downstream 241102 10420482 ~ 10420692 (+)
G69090 NA non-coding downstream 242663 10422043 ~ 10422253 (+)
LOC122351945 NA non-coding downstream 243834 10423214 ~ 10435142 (+)
G69080 NA non-coding downstream 269321 10448701 ~ 10457161 (+)
G69075 NA non-coding downstream 269627 10449007 ~ 10458086 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other upstream 265 10167336 ~ 10174783 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other upstream 61692 10092350 ~ 10113356 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other upstream 608051 9443125 ~ 9566997 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other upstream 1014227 9156045 ~ 9160821 (+)
si:ch1073-416j23.1 si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448 other upstream 1024955 9142592 ~ 9150093 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other downstream 149351 10328731 ~ 10395230 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other downstream 842356 11021736 ~ 11030409 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other downstream 1286224 11465604 ~ 11490149 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other downstream 1867119 12046499 ~ 12155804 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other downstream 2255608 12434988 ~ 12452365 (+)

Expression


Co-expression Network