LOC122351981


Basic Information

Item Value
gene id LOC122351981
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19251637 ~ 19254248 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251824.1
gGCTTTGATAGTGTtatgaaaagcttatttctcaGTTGAGATCAGCTGGTGCGCATGCGCAGTCCTACGCATACGTCTCAGAATGCTGAGTTtttctatagcaaccggaaTGTAGAAaaatttgattggttgactgAGTCCTAATAAGAACACCTGTGGTCTTATACTAATCAAGCTTCAGTTTCAGTCTGTTTGCGTGTATGAGAAGCCGTCTCTGTGCTCATACATGGCCTGTGGGGAATTGTTGCGTTGTTGACAAAACAACAACAATTACCAGCACTTGTAACCGTGGAAATGTCTACTCCTACATGTTGATATGCTGAGGAATCAACTGGAAACATGAGGCTGGTGACTGAATGAGCTTTAATGGACTCAACCTTCCGGCAGCAAAAATTCCTTCCAATGTTCTATACAGAACTTTTAACAACAGTTGCAGTGACATGCTGACTTTACAGTTCAgcgattggctattttattcagaaggcggggcttcttgCGATTGATCAGTCACgttgcattttttccccattcaaaacTACTACATGAGCGACATGTCCATTGGGTACGGTCTTTGATAATACGCAGCTGGTGTTTTCAACAGGGATGCTACAACCTCCATCTCGGTTTGTCTGAAGGGGCTGAGGAGTGCTATTTCCTGTGCTGagtgtaaaagaaagaaaacgaagaagaaaaagaacagagaaagatggagagagagaaagagactgcTGCAAAGGCCTCTGGGTATTGGCTGGTTTGTGGTTAGGTCACAGTCTGAAGCGagaggaggaaggaggagcGGGAGGGGGGCTTCCACTTTCCTTCCTACCGCTCACCAAATTGATACAGCCACTGCCAAGGGGAAACTCCCAAAGCGGGACCCATTTAGGGCAAAACAGggcaaaaaagcacaaaaatgtgACGGCAGAACCCTAAAGCTCGCAGAGAACTTTGCACTCGCTCGAGGAGGGAATGCACTTCAACGACACAGGCAGAAAAGCAAGGCTTGTGTGTTTTGCACCTGTGTGGAGCCCGGCTGAAAGGAGATGTGTGGAAAGAGACATCTGTGGAGAGGTGGAGGAAAGTGAGAGAAGGCTGGAGGGAGTTATATGtgtggggagagagagagagagagaaagagagagagacagataacTGGAGGAAAACTGTGAAACAGTGGTTTGATAAAAATGGGTGCACAGCTGTCAATAGCTGAAGTGAAAACAGGAAACAAATGAAGATGTCATCTCCCGACACATCTGACAACCCCATGATGACATTGAGTAGGTATTTTAGGATGCGAGTAGGAGTGAGAATTCACAGGCGGATGGCTCGAAGAGTACGTTTTGACCGATCACACAGACCCCTGGCACAGTATCGCTCCATGCCCTCCTTGCGGGTACGAGGCAAGACATTAGGCCTCAGAATCTGAGTGTTAGCGACTTGCTTGCTCTGTTCACACTCTCACATCCTGAGCAGGCGTTTGAGCGTTGCGGACTGAAAAGGTCAGTGGAACGTAACCACAGAGGAGCTGAAGGAGCCCGTTAGCTGTGACAACCAAAGGCCTAACACTGGTCTCGCATCTCTGTATGGAGTGTAGTGTCACTTACTCAGCAAACCCTTATCGCAAAGATGTCCCCTGACACTACGGAAGCATTTCCAGACACTTGTCTTGACAAagtacaattaatatttttgtttaattaaaattagtttatttttattaaatgttccatttcatgttaatgtaatataaattaaaatattaaaaaatatttaaataagcaataaacaATAGCAATGGTAACATGTCAGCATAATATAGAatgtaaaattatgtttaatcaATGCTACACTCttcttgttatttaaaaaaattaaataacattatattgaactaatctaaaatattaaactaatcacaaaatgaaaaattttgaTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251824.1 True 1942 lncRNA 0.43 3 19251637 19254248

Neighbor

gene id symbol gene type direction distance location
LOC122351886 erbb4,LOC107741926,LOC107660610,LOC107721020,LOC107662043,LOC107555909 coding downstream 2462 18980278 ~ 19249175 (-)
myl1 myl1,LOC107721018,LOC107673729,LOC107596080,LOC107660614,LOC107555938 coding downstream 361582 18885444 ~ 18890055 (-)
tgfbr2l si:dkey-101k6.5,LOC107660622,LOC107741917,LOC107555932,LOC107714146,LOC107673748,LOC107596078 coding downstream 531190 18709228 ~ 18720447 (-)
znf142 LOC107741908,LOC107555924,LOC107660628,LOC107714222,LOC107596070,LOC107673749 coding downstream 602582 18642470 ~ 18649055 (-)
ccdc93 ccdc93,LOC107741907,LOC107555923,LOC107596073,LOC107714249 coding downstream 618033 18626417 ~ 18633604 (-)
ikzf2 si:zfos-1425h8.1,LOC107741927,LOC107660609,LOC107662042,LOC107721023,LOC107556196,LOC107568511 coding upstream 5481 19259729 ~ 19285223 (-)
bard1 LOC107741928,LOC107660605,LOC107602130 coding upstream 291976 19546224 ~ 19568760 (-)
abca12 LOC107657499,LOC107714367,LOC107602131,LOC107660608,LOC107741931,LOC107565025 coding upstream 314920 19569168 ~ 19634801 (-)
pofut2 LOC107741944,LOC107660604,LOC107714363,LOC107657505,LOC107565035 coding upstream 382203 19636451 ~ 19642933 (-)
pms1 pms1,LOC107602147,LOC107728929,LOC107660601,LOC107714373,LOC107565013 coding upstream 430642 19684890 ~ 19708970 (-)
LOC122351248 NA non-coding downstream 278735 18911843 ~ 18972902 (-)
G71471 znf148,LOC107673743,LOC107660621 non-coding downstream 509412 18737756 ~ 18742225 (-)
G71389 NA non-coding downstream 554606 18608827 ~ 18697031 (-)
G71424 NA non-coding downstream 559548 18688498 ~ 18692089 (-)
G71400 LOC107555927,LOC107660626,LOC107741910,LOC107660658,LOC107660625,LOC107578255,LOC107714212 non-coding downstream 596886 18653627 ~ 18654751 (-)
LOC122351235 NA non-coding upstream 189197 19443445 ~ 19459100 (-)
G71587 NA non-coding upstream 204539 19458787 ~ 19543847 (-)
LOC122351387 NA non-coding upstream 242664 19496912 ~ 19508085 (-)
LOC122351304 NA non-coding upstream 265492 19519740 ~ 19525590 (-)
G71667 cunh2orf88,LOC107728910,LOC107657540,LOC107714370,LOC798500,LOC103027948 non-coding upstream 412752 19667000 ~ 19671164 (-)
LOC122352185 NA other downstream 681755 18569755 ~ 18569882 (-)
sema5ba sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063 other downstream 885370 18251236 ~ 18366267 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other downstream 1730077 17364187 ~ 17521560 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other downstream 1996146 17235872 ~ 17255491 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other downstream 2362090 16886753 ~ 16889547 (-)
ankar ankar,LOC107728908,LOC107660654 other upstream 465694 19719942 ~ 19731794 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other upstream 542004 19796252 ~ 19829475 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other upstream 579672 19833920 ~ 19852625 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other upstream 627302 19881550 ~ 19893315 (-)
G71938 nab1,LOC107565022 other upstream 1234916 20489164 ~ 20503890 (-)

Expression


Co-expression Network