LOC122352046


Basic Information

Item Value
gene id LOC122352046
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 23380158 ~ 23387077 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251836.1
TTTAACCGCTGTCAGTGCAAATGGCCCTTTAGATAAGAGAAAGACAAGAGAGGGCCTCCGGAGAGCTCCACTGCCTTGCAGGATCCTACTCCGTCCTAGCTTTTATTAGTCTTGGAACGGACGACCTGTTGCATATTCTGAAGGGTGCTTTTAACCTCCCGCCCGTGAGGTCATGATCGGTCTCCAGAGCGACTTCTTTTGGAAGAAAGGATCAGATCAATTAACCACAGGCGGATGATCTGCCCGGCACACACCACAGGCGTTGTGTTTTCAGGAAGACGTGTCAAGCTAAAGGCGCTgTGTTTGGActccattctgacggcacccattcactgcagaagaccCATTGGTGAACGACTAAATCTCTCTCAAAACCCGatgtgatgaagaaacaaactagaTTCTAGATTTTTGATGGCCTGatggtgagtacattttcagc

Function

GO:

id name namespace
GO:0042440 pigment metabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:0042168 heme metabolic process biological_process
GO:0046148 pigment biosynthetic process biological_process
GO:0033013 tetrapyrrole metabolic process biological_process
GO:0033014 tetrapyrrole biosynthetic process biological_process
GO:0006778 porphyrin-containing compound metabolic process biological_process
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0006783 heme biosynthetic process biological_process
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251836.1 True 442 lncRNA 0.48 3 23380158 23387077

Neighbor

gene id symbol gene type direction distance location
LOC122352042 LOC107704822,LOC107739717,LOC107688954,LOC107601359,LOC107741586,LOC107601360 coding downstream 90019 23281514 ~ 23290139 (-)
hdac4 hdac4,LOC107560613,LOC107601379,LOC107741589 coding downstream 135911 23005838 ~ 23244247 (-)
agr1 agr1,LOC107718316,LOC107692342,LOC107601372,LOC107754004,LOC107695966,LOC107560612 coding downstream 473846 22902448 ~ 22906312 (-)
itgb2 LOC107699026,LOC107739438,LOC107601382,LOC107676087,LOC107601617,LOC107755371 coding downstream 734411 22636895 ~ 22645747 (-)
vil1 vil1,LOC107699006,LOC107676071,LOC107755365,LOC107601613,LOC107739444 coding downstream 744161 22622058 ~ 22635997 (-)
LOC122351748 LOC107601359,LOC107704822,LOC107741586,LOC107739717,LOC107688954,LOC107601360 coding upstream 3615 23390692 ~ 23410990 (-)
gjc4b cx43.4,LOC107704825,LOC107741582,LOC107601378,LOC107688946,LOC107739588 coding upstream 32185 23419262 ~ 23426434 (-)
LOC122352061 igfbp5b,LOC107656526,LOC107719877,LOC107601375,LOC107739616,LOC107567302 coding upstream 177302 23564379 ~ 23649560 (-)
LOC122351749 NA coding upstream 329032 23716109 ~ 23717055 (-)
LOC122351750 igfbp2b,LOC107601376,LOC107719878,LOC107656525,LOC107739679,LOC107688948,LOC107567301 coding upstream 527604 23914681 ~ 23918652 (-)
LOC122352045 NA non-coding downstream 102 23361012 ~ 23380056 (-)
LOC122352044 NA non-coding downstream 29217 23308487 ~ 23350941 (-)
G72816 NA non-coding downstream 36124 23338694 ~ 23344034 (-)
G72803 NA non-coding downstream 102372 23256078 ~ 23277786 (-)
G72809 NA non-coding downstream 108639 23271094 ~ 23271519 (-)
G72881 NA non-coding upstream 47099 23434176 ~ 23434476 (-)
G72889 NA non-coding upstream 85336 23472413 ~ 23472728 (-)
G72909 NA non-coding upstream 150427 23537504 ~ 23540103 (-)
G72918 NA non-coding upstream 171676 23558753 ~ 23634077 (-)
G72904 NA non-coding upstream 211910 23598987 ~ 23600892 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other downstream 868851 22297007 ~ 22511307 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 1156491 22171463 ~ 22223667 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other downstream 1653338 21709288 ~ 21726820 (-)
G71938 nab1,LOC107565022 other downstream 2876268 20489164 ~ 20503890 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 3486843 19881550 ~ 19893315 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 543130 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 556908 23943985 ~ 23960325 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other upstream 833445 24220522 ~ 24280708 (-)
G73201 NA other upstream 1640508 25027585 ~ 25030965 (-)
G73301 NA other upstream 1961701 25348778 ~ 25349640 (-)

Expression


Co-expression Network