LOC122352063


Basic Information

Item Value
gene id LOC122352063
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8859473 ~ 8860379 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251839.1
GTTCCGCGCGCTGAAGACGGAGAGCAGATCAATGCATTTACCCGCGCGCACACTAAATACACCGACACTTCTATATAAAGACAAAGGCCTCGGGTCTGTGTGTTATAACGCTACCGACGCGACCAAACGACGCGGAGAGAAGACGTCGTCGTCGTCAGAGACGTAGTGAACGAGTGGACGCCCAGGAtggatgttttgtgttttctgtactTGTCTCACGTTGAGCCACGCGCACAATACCTGCAGATGAAAAGGTTTTGTTCGTTCGGCTCGCGTTAAGCAGATGCAGACCCTCGCCAGTAAAACACCCCATCGGCTGATATCTCTCCGTCGCGCAGTGATATGCTGATTAACTATAAAATATGCTCAGTCGATGAAATATGCAGACTAATTTCTATGTTCATTGCCTATTTATTTACTTGGCGTGTAGACCAAAGCAAGTatgttaaaagctttttaattattcatttactgATTAACCAGTAGCACTTGTAATATACTGTAAGGTCAACATTTTGTGAATTAAACCATTACATATATAACCGTGACATTCTGTtttctatgtatatatttgtaataatcagtaTATTGCCATTAAAACTCAAATACAGACAATTGATGAAAAGCCCTGGTGTTTAATATGTGAATAAGTGTGTAAATATCCttactaaatttttttttatatcctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251839.1 True 689 lncRNA 0.40 2 8859473 8860379

Neighbor

gene id symbol gene type direction distance location
umps umps coding upstream 27571 8827690 ~ 8831902 (+)
itgav itgav,LOC107663834,LOC107672211,LOC107752904 coding upstream 35082 8801297 ~ 8824391 (+)
zc3h15 zc3h15,LOC107562108,LOC107663835,LOC107749874,LOC107752875,LOC107672221 coding upstream 61538 8793317 ~ 8797935 (+)
znf804a znf804a,LOC107562107,LOC107749875,LOC107752876,LOC107672201,LOC107663892,LOC107560471 coding upstream 157178 8651167 ~ 8702295 (+)
nup35 nup35,LOC107663916,LOC107749876,LOC107668364,LOC107752922 coding upstream 289476 8566454 ~ 8569997 (+)
chpfa chpfa,LOC107749870,LOC107663851,LOC107571864,LOC107672254,LOC107743933 coding downstream 106482 8966861 ~ 8976999 (+)
hnmt hnmt,LOC107751616,LOC107720324,LOC107663827,LOC107658225,LOC107577691,LOC107558040 coding downstream 710021 9570400 ~ 9574754 (+)
spopla spopla,LOC107751611,LOC107556446,LOC107720326,LOC107558043,LOC107658226,LOC107663914 coding downstream 741607 9601986 ~ 9610746 (+)
LOC122351877 ugt1a7,ugt1a5,ugt1a6,ugt1a2,LOC107663839,LOC107556441,LOC107732349,LOC107658228,LOC107658227,LOC107558044,LOC107720327 coding downstream 768235 9628614 ~ 9652625 (+)
LOC122351880 ugt1a4,LOC107663839,LOC107556441 coding downstream 772774 9633153 ~ 9636711 (+)
G68808 NA non-coding upstream 32427 8826212 ~ 8827046 (+)
LOC122351403 NA non-coding upstream 244489 8600724 ~ 8614984 (+)
G68678 NA non-coding upstream 636656 8222587 ~ 8222817 (+)
G68668 NA non-coding upstream 653510 8203853 ~ 8205963 (+)
G68446 NA non-coding upstream 1005195 7853481 ~ 7854278 (+)
G68879 asic4a,asic4,LOC107672268,LOC107663852,LOC107560474,LOC107749871,LOC107571863 non-coding downstream 187081 9047460 ~ 9078537 (+)
G68880 NA non-coding downstream 202741 9063120 ~ 9064676 (+)
G68895 NA non-coding downstream 315945 9176324 ~ 9178926 (+)
G68896 NA non-coding downstream 320372 9180751 ~ 9184568 (+)
G68897 NA non-coding downstream 320525 9180904 ~ 9194303 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other upstream 353330 8460744 ~ 8506143 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other upstream 425990 8431111 ~ 8433483 (+)
si:ch211-167j6.3 NA other upstream 516722 8341295 ~ 8342751 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 2886350 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 2973720 5883927 ~ 5885753 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 3008 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 6718 8867097 ~ 8871633 (+)
si:ch1073-416j23.1 si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448 other downstream 282213 9142592 ~ 9150093 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other downstream 295666 9156045 ~ 9160821 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other downstream 582746 9443125 ~ 9566997 (+)

Expression


Co-expression Network