LOC122352066


Basic Information

Item Value
gene id LOC122352066
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15948113 ~ 15953976 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251840.1
AAGTTCAGCTGAGGTGAAGGGGTGAGACAACGTCAAAGAAGGGACAACagcgagagagatagagagacgTGTCTAATGAAGGAATGCACACAGAGAAATGGAAACTAATGGAGACAAAGGATGTacaggcgagagagagagatggcgaTGGGGTGGCTGACTGCTGTTGAACTCATCGTCATCTTAATTGATGAGGTCATCCCGGGGACTATCCCAAAACTAGAGTGTCCCCGGGAGGTCGTCACCAGGTCATCCAAAAGTCAAAGTGCATCAGAGAGAGATGACGTAGCATGTGAAAGGAAATTTAATGTGCCAAGAATAGCAGATGGGTTGGTGAGAGGAGGATACAAAAAGTAGCTGCAAAACAGGAGTACAATTATGGTTATAACATGGCACAATCCCACTGGAGTAATTTGGGACTTAAAGGCCATGATGATTATTCTTGGCTCGTTGTTTTGAAAGGCTTTAATCTGAAATGAAACCACCCCAATATTAATGGTGTCATGTTTGTTTATGAAGTAAGTAAGAAAGTAAGAAGATCGGGCCGCTGATGTCCAACCAGACCAGATGGTGTCATTTTGAAAGAAACTGAAAGAAGAGCATTTTGAAACTTGGAAGGAGGTTCAGAACAAATCGTGGAAGCTTGAaaagaagaatgaaagaaaggaaGTTCTGTCCATTGTGATTAGCGATGACTAACTTGGTTATTGAATTGgccttttttattaatgtaaaataaggcAATAGTTTGACAAAGACATTTGgataaaaacaatgtaattttCAGGAATGCGTTGCTTGCTGACTGCATCAAGAAGCAAAAGCTGGTCATTTCTGACTGACAAACAGCTTGTGTTTTGCTCATACTGTAGCTATAAATGTATGCCCTAATGTGTTGTTTGTCTGTGTCCCAGCTTGCGATAGTTTGCAGATCCTCTTCAAAGTACTTCAGATGACAAGGGACCCCTCTCAAAAACACAAGCCTGAACTCTTCAGTTTAAGAGCCCGGCAGTTTGCCTCGCTCTTCCAGCGGAACATTGAAGAGGAAGTGCCAACCGTTCTTTGAAGATGTTCAGGTTTCTGGTGAACAATCAGTGTGAGGCTGATGTAGATGGTCTCGACCCCTGGTTGCTGTGAACGTTAGGGATGCAGAGGAGGGATGGAGAGATGCATTCCTCCTAAAGAATCCGGCTGAGACAATAGAACAGCGCACAGGCACTTGGGGAACAGAAGGGTGACACAGAGGGCAGCTCTCACCCACAACAACTCTCCTCCTTTGAAAACAAAACCCCAACCTGTTACTGCTTCAGCCTGTCTGTGGGAGGGGATGCTCGTAATAAAGCTGCCAGCCCCCTCGTTAGGTATCACGAGGGTAAGTGTATGTGTTTGAGTGAAGGACCAAGGAGCAATAGTACAGGAATGCGCCCTTTCAAGTGACATTTGGGAGCAGGAGCTCTGTgccactttatttttcatatgcACGTTTTTTGACCTTTccctttttcattttaggggATACTGATGAAATACAGCTTGCAATATTTTACAGCTTGCCAACATATATTTAATCATgtcatgcatgtaaatatacaattaaaagaaattgtACTATGATTATCACTAATGATACAAGTGGTAAAATACATAGCCACGCAATcaataagaaattattaaagGTGACGTTAATATCCATAAACATGACCAGTATTCATATATAGACAGTGCATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251840.1 True 1729 lncRNA 0.42 4 15948113 15953976

Neighbor

gene id symbol gene type direction distance location
olig2 olig2,LOC107659900,LOC107719825,LOC107595891,LOC107731746,LOC107569749,LOC107690629 coding downstream 5023 15940890 ~ 15943090 (-)
olig1 olig1,LOC107731749,LOC107569756,LOC107683299,LOC107719828,LOC107659903,LOC107595892 coding downstream 15577 15930621 ~ 15932536 (-)
ercc1 ercc1,LOC107570013 coding downstream 34543 15909284 ~ 15913570 (-)
LOC122351156 LOC107731741,LOC107569997 coding downstream 40546 15906028 ~ 15907567 (-)
LOC122351158 LOC107690624,LOC107595883 coding downstream 43930 15902347 ~ 15904183 (-)
gatd3 zgc:112056,LOC107731744,LOC107570103,LOC107595889,LOC107659887,LOC107690602,LOC103039907,LOC105908687,LOC108412974,LOC106582488 coding upstream 9818 15963794 ~ 15966467 (-)
LOC122351640 LOC107719827 coding upstream 12787 15966763 ~ 15973561 (-)
hpxa LOC107690487,LOC107719811,LOC107595840 coding upstream 20589 15974565 ~ 15978301 (-)
LOC122351503 LOC107731735,LOC107690619,LOC107690492,LOC107595881,LOC107570033,LOC107719821 coding upstream 44165 15998141 ~ 16006044 (-)
fhip1b fam160a2,LOC107690600,LOC107731760,LOC107690485,LOC107569793,LOC107719813 coding upstream 52204 16006180 ~ 16024933 (-)
G70660 NA non-coding downstream 185444 15762383 ~ 15762669 (-)
G70633 pikfyve,LOC107719798,LOC107681306,LOC107731754 non-coding downstream 303837 15642259 ~ 15644276 (-)
LOC122351574 NA non-coding downstream 309677 15628883 ~ 15638436 (-)
G70581 NA non-coding downstream 526536 15418999 ~ 15421577 (-)
LOC122351294 NA non-coding downstream 685437 15256988 ~ 15262676 (-)
G70894 NA non-coding upstream 164306 16118282 ~ 16120319 (-)
LOC122351188 NA non-coding upstream 651391 16605367 ~ 16631420 (-)
G70955 NA non-coding upstream 656294 16610270 ~ 16610561 (-)
G70956 NA non-coding upstream 659141 16613117 ~ 16613424 (-)
G70967 NA non-coding upstream 676510 16630486 ~ 16715102 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other downstream 176249 15771421 ~ 15771864 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 548676 15389218 ~ 15399437 (-)
G70549 NA other downstream 642138 15303103 ~ 15305975 (-)
LOC122351495 NA other downstream 1575439 14359646 ~ 14372674 (-)
G70317 NA other downstream 1694337 14196479 ~ 14253776 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 766828 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 863164 16817140 ~ 16823775 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other upstream 932777 16886753 ~ 16889547 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 1281896 17235872 ~ 17255491 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other upstream 1410211 17364187 ~ 17521560 (-)

Expression


Co-expression Network