LOC122352098


Basic Information

Item Value
gene id LOC122352098
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17733203 ~ 17735919 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251848.1
tggaggGTGTGCGGATAGATGGGGACAATAACGCACTGTGAGCTTGACTTTGATCGGTTTCCAGGCACCTGACGTAGCGCAAGGAAAGCAGGGAGACAGCAGAGAAAACTGTATGCACTCTGTGGAACACGGCTTACTTTGAAGACACCCCAACATGCTGTGACTTTCTGAATGATAAGTGTttagtgtgtctgtctgtttgtgctCCAGTGGTCATGGCTACATGTGAAGATGCTGCAGACATCTATTGAAGATTGTGTTTTCAGTACACAGAATGCAAGGTCTGCCATAGACTGCCCACACACTCACAGCCAATGGCTCGCTCCAGGGAAAGCACTTGTGCCTGCGCAGCAGTGACCCCCTCCAAAGCACAAGCGctgttttgACGGCACCCGTGAGGAgtcattggtgagcaagtgatgaaatgctaaatttctccaattTTGTTTCGATGAACACACAAACGAACCAAAGGGTGAGCGAAtcttttcaaatttttattttgggtgaactattcctttaagcaaaCCTAAAATACATTACTTGCACTATCTTTGgttatttttcagcatcatttacTGGATCTAACAATTACTTCTCATAGTGGAGTCCCACATACAATGAGTTGCTGTTGTTATCTGTGAAGCCTTCAGTTGtgtgccttttgtttttggAGCCATAATAAAGTGCTTGAGGTCCA
>XR_006251849.1
tggaggGTGTGCGGATAGATGGGGACAATAACGCACTGTGAGCTTGACTTTGATCGGTTTCCAGGCACCTGACGTAGCGCAAGGAAAGCAGGGAGACAGCAGAGAAAACTGTATGCACTCTGTGGAACACGGCTTACTTTGAAGACACCCCAACATGCTGTGACTTTCTGAATGATAAGTGTttagtgtgtctgtctgtttgtgctCCAGTGGTCATGGCTACATGTGAAGATGCTGCAGACATCTATTGAAGATTGTGTTTTCAGTACACAGAATGCAAGGTCTGCCATAGACTGCCCACACACTCACAGCCAATGGCTCGCTCCAGGGAAAGCACTTGTGCCTGCGCAGCAGTGACCCCCTCCAAAGCACAAGCGctgttttgACGGCACCCGTGAGGAgtcattggtgagcaagtgatgaaatgctaaatttctccaattTTGTTTCGATGAACACACAAACGAACCAAAGGcatcatttacTGGATCTAACAATTACTTCTCATAGTGGAGTCCCACATACAATGAGTTGCTGTTGTTATCTGTGAAGCCTTCAGTTGtgtgccttttgtttttggAGCCATAATAAAGTGCTTGAGGTCCA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251848.1 True 700 lncRNA 0.45 3 17733203 17735919
XR_006251849.1 False 606 lncRNA 0.47 4 17733203 17735919

Neighbor

gene id symbol gene type direction distance location
dnajc28 dnajc28,LOC107748188,LOC107673653,LOC107597584,LOC107756751,LOC107656783,LOC107569146 coding downstream 81082 17649975 ~ 17652121 (-)
zp2l1 NA coding downstream 158829 17559528 ~ 17574374 (-)
appb appb,LOC107597486,LOC107748127,LOC107595805,LOC107756757,LOC107695460,LOC108426075 coding downstream 417385 17299245 ~ 17315818 (-)
si:ch211-160b11.4 NA coding downstream 534812 17196411 ~ 17198391 (-)
mettl21cb zgc:172067,LOC107673723,LOC107748129,LOC107597488 coding downstream 541061 17188746 ~ 17192142 (-)
ralba ralba,ralb,LOC107746258,LOC107597482,LOC107596059 coding upstream 292435 18028354 ~ 18038668 (-)
hspbap1 LOC107722869,LOC107661136,LOC107660643 coding upstream 461207 18197126 ~ 18205461 (-)
adcy5 adcy5,LOC107555914,LOC107661140,LOC107660638,LOC107596066,LOC107714401 coding upstream 691153 18427072 ~ 18492873 (-)
hacd2 hacd2,LOC107660639,LOC107741899,LOC107661144 coding upstream 758167 18494086 ~ 18499894 (-)
si:dkey-219c10.4 LOC107741933,LOC108266238,LOC106586425,LOC102795313,LOC101468032,LOC107673728,LOC107660664,LOC107555910 coding upstream 798733 18534652 ~ 18545151 (-)
G71194 NA non-coding downstream 40383 17665519 ~ 17692820 (-)
G71190 NA non-coding downstream 71758 17661216 ~ 17661445 (-)
G71175 NA non-coding downstream 87283 17644438 ~ 17645920 (-)
G71187 NA non-coding downstream 89527 17643356 ~ 17643676 (-)
G71186 NA non-coding downstream 90765 17642203 ~ 17642438 (-)
G71293 NA non-coding upstream 486395 18222314 ~ 18226787 (-)
G71339 NA non-coding upstream 772521 18508440 ~ 18510009 (-)
G71341 NA non-coding upstream 775254 18511173 ~ 18511528 (-)
G71389 NA non-coding upstream 872908 18608827 ~ 18697031 (-)
G71400 LOC107555927,LOC107660626,LOC107741910,LOC107660658,LOC107660625,LOC107578255,LOC107714212 non-coding upstream 917708 18653627 ~ 18654751 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other downstream 211643 17364187 ~ 17521560 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other downstream 477712 17235872 ~ 17255491 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other downstream 843656 16886753 ~ 16889547 (-)
G70986 pou2f1b,LOC107748141 other downstream 909428 16817140 ~ 16823775 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other downstream 986981 16720804 ~ 16746222 (-)
sema5ba sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063 other upstream 515317 18251236 ~ 18366267 (-)
LOC122352185 NA other upstream 833836 18569755 ~ 18569882 (-)
ankar ankar,LOC107728908,LOC107660654 other upstream 1984023 19719942 ~ 19731794 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other upstream 2060333 19796252 ~ 19829475 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other upstream 2098001 19833920 ~ 19852625 (-)

Expression


Co-expression Network