CI01000000_04138020_04144928


Basic Information

Item Value
gene id CI01000000_04138020_04144928
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 4138020 ~ 4147823 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_04138020_04144928.mRNA
ATGGAGGATATTATTTGTGTCAGCTCGGGCAGCGACGACGACTCTGATTTAGAAGTTATAAGTAGTTACAACGAAGACAAAGAAGATGCAGTTCCGTTCATCCGAGCAGAATGGCTCCAAGTCACACCTGTCCTCATTGATATCACAGGCCATAACTTCACCCCTCCAAGGCGAAGATGCTCAAGAAGAGATACTTGCTCCTCCTTAGAAGTTATAGATTTAAGTGAAGATGATCCTGCTGATTATGGCAACATCCAGCTTCAGAATCCATCACCGACTCTGCCATCAGTAGAAAGGAAAAACAAGAAAGCGCGTGTAACACTGGCATCTTTTGGAAAACCTCAAGAATCACAATCTCAAACAAGTGGTGGAAAAGATGTAGCTAATTCAGGGTGTTTTGTAGGGAGTGTGCAGTCTGTCGTCTCTAAGTCACTCACTCAGGAGAGCGCTCTCACAGACGTGCTTCAAAGAACAGAAAAGCATTTGCATCAGAACACAAATTGTAGTTTAAGCTTGTCGTTTGAGCATTTGAGCTGGGACAAGTGTTTGGAACGTTGCAGCTCCAATGATGTGAGTAAAAATTCTATTGCAGATATATCGCAGAACACTAAAGACTCTCATCTGAGTACACCAGCTGTCTGCAGCACAGACACAGACCAAGGAAACAACCAAGAAGACAATCTTGACCAGAAATGGGAAGGCAGTGTTCACTCTTCTTACAGTCTTGACAGTCCATATTACTGTCCGAGTGAGGTAGATGCTTATGTATTTTCTGACTCATCCAATAAATCTGAAGATAAGGATCACCCGTTTACAACATATAACAGTCAACCGTCACCTCAAACCTTTGAGCTTCCTTCTGATACTCATACTGCATCAGTGTCCAATGCACTTTCTTTAAATGATGATGGTAAAACGATGAATATCTCCAAAAATGAGGACCTACATACTCAGGTTCTGCCCGAACCTTCTTCCCCCTCAATACCTACCTCATCTAGGGCCTCGCCCCACTGGAGCCCTGAACTTATATCTCGACAGAGTAAACCTAACAGTCCCACTTCCACAGAGATTCTTGCCAGCGACACAGTGGCACTTTCCCCTGATCTATCTTCGCTGAGCTCACCAAGTAGTTCATTCAGCCTCCTCCTCTCGCAGCCCTCCCCGCCAAACTTTTCAGAGAGAACAGAGCTAAGGGGAAATGATTTAGATGCAGGATCCCCAGAAAGCCCTTCCTTCAGGCTTTGGGAGACAAGCAGCGATGACAACAATGAAAATGTGCTGGATAATGCTGTCTCAGGTCTTTCTGAAAACAACTCGCAAGATAGACAACATATTTGTCTGGCTCAGTACAGAAAATTAAGTCAGTGCATGGGTGGAATGGTTCCACAGATGCATGACGATGAGGAGGAAGGTGAACACTATGGTCCCGCTGAGCCCCTGTGCCGACAGAGCCTTAGTTTGGTTAACAGCACTATTGAGGAGAATTACCCCGAGGGCACTCTTCAGCTGCTCTCTGACTTCATTCAGCCTCGGTATTACCCACCGGTGGAAATTACGAAACATCTGCTCAGGGGGATCTTCTTGGACCCACAGAGCCCTGATGTCCTAGCCGTAGAGGCGTATAACCTTTTGATGAAGACTCAGAGATACCACCCTGTGGACGCTTCTACAGTCCCATGGGATTGGGAACTGATGAAGTCGGTTATGAATGATCAGGATGACACTAGGAAGTTGCGGACGGAGATCCGGTACATGCTCCTGCAATATGTGTTGCAGGTTTTAGAGGATGACTTTCATTTTAAACTCAGGACTCAATGTCTTCAACACTCCGTTGCAAAGAAGATGCTTTCATGTGGCCCTGAAACGTTTGGGCAAGTCAGGATTGTAATATCTCTTCAGAGGATGTTAACATTGGCCGTAGAGGTGGACAAGGACCCCACCTACAATTCAGACAAACTTTCAGAAGAGCTCTTCAGTTGTCTTAACAGAATGTGTTCTTGCAGGAAGATAAGACTCTTATTGTTGAGTACTCTGGAGAGCAAGCTGCTGAGATGCAAGTTGTTGAAGCTGCTGCTGGATGAGGCTTGTTCTCAGAAGACACGCTTGCCCATGTCTCTAAGCTTGCTGCTACACTACCTTAAGAGCTCCACACTGGCCTCCGAACCCTCAGTAAAAGACGGAGCAGAGAAGTGGAGGAAATGGGAGGAACTTCTTCAGCTTCTGTGGATGCTGATGCTTAGTTACCAAGAAGTGGTGACAGGTCATCTACACTGTCCCATCACAAAGCGCTTTGATAGGATGCATGCTCCGATTTGGACACGGGATGATCAGGTGAAAAGCTCAGCAGTGCAAGATGCAGCAGATGCCTTCCTGATACGAGCAGCGGATGACATCGGTCAAGCTCTCCCCATGGAAATAGAGGAATTACTATGCCAACTACAAGTACACATAACTGACATGTCCAGTGTTGCTTCAAGTCATTAAACCTTTTAATTGCTTTGTTTGACATTTTTTAAAATAAATTTATTTTTAATACATTTTTGTGTTTGTTCTAATAATAATAATATAGCCACGAGCGGCAATTAT
>TU2672
GTTTGTTCTAATAATAATAATATAGCCACGAGCGGCAATTATATAAAGATTCTAAGCATTCTGTTGACAATTTTAGGCAAAAACTAGAATTTATGCTATGTAATGCTGTCCTCATGGAAATGCAGGATTTACTACCTCAACTGCACAGCCTCTTAAATCTGCTATTCTAAATGTATGGTCATTAACAAATAAGTCTTTTGTAATTAGCCAAACTGTTGAAAACTTTAAGTTGGACATCATCTTCCTGACAGAATCATGGCTTGACAGTAATCATAATTTTGTTCTAAATGAATCATCTCAACCAGGTTTTAGATATTTCAGTGTCCTTGGACTTAACAAGAAGGGTGGTGGAGTTGCCTGCCTGTTCTGCAATACTTTGTGCTAGAGTGAACAGTCTGTTATTTTATTAGTTCTCTGTCATCCTAGACTCAAAAAAGGCTTTCTTGATGATCCTTTCTAGGATTTTAACTGACTTTATCACTAGTGATTTTAATATCCATATGGATGTAATTTCTGATCCATCAACTGTTCATTTCACAAAGTTACTAAACTCATTTGGCCTTATGCAGCATGTAACTGGCCCCACGCACAAACATGGTCACACACTCGATCTGGTGATCTCACGTGGCTTAACTTTCAGCCACCCACAGACTGTACATGTTGCCATATCTGACCCTTTTCACATTTCCTGGTTTCTCAGAAGCAGAAGTCGCCATAGTAGTGAATGAGAGAATACATTAAATATATTTTTTGTGTTTCCATTTGCTCAAATAGAAAAAGAAAAACTCCACAATAGTGTTTTCACAACTTTTATAAATAGGAAGAAAAATAGAGAGCGATTGATAATGGCAGTCAGAAGAGAGAAAGATATCATTTTAACTGTCACTCCCATAGCTGCTGTTTTAGAAACACCCTCACAGCAGCGTTAACTAAGTTTTTGTAATTTGATGCAAAGGTAATATAATATAATATTGTATTTTAAAAATGAAAATATAAAAAACTTTGCAGGATTTACCATATTGAAGACAGTTAAAACATGTCATCACAGTCCGTGAAAAGTGTCTGTTGTGTCTTTTTTGAGATTTCAGTATACCAAAACTGTGAGTGATAAGAGAACTGTCAATAAGCGCTTTCTCACTGCTGATTCTGCTGCAACCTCTGTGGAGCTCATGTCATCTCTCCCTCCTCTCACTTACCCCTCTGTAGACACTTATGTTGAGGATTTTAGTCTAAGGCTCTCCGAATGTATCAACTTTTTTGCTTCTTTAAAAACAAAGACTGTCTCTGGGACAATTAAAGCCCCATGAAGAAATAGTACATCTATTGTAAAATTAAGAAGAGACTTCAGGAGAGCAGAAAGGCAATGGAAGCGCACAAAGCTTACAGTTCACCATGATATATCTATAAGACTTAGCCTATCTGAAAATGTTAAATAATGCAATGAAGTCTGCAAGAAAAGCTTATTTTTCAAGTTTAATTGACTGCAACATAGACAACTCTAGATTCCTATTCTCCACTATTGATAGGCTACTTAACCCCCCAGCTCAAATATCTTCAGAACTTCTCAAAGTGCGATGAGTTCGCAGAATTTTTTAATGACAAAATTACTCCCATAAGACAAAACATTGCCAGCACTTGCCCTACTTGTAAGGTCTTCAACTCCTCAGCTAGTCCTTTGCAATGTAATCTGTCCTCCTCAGCTGTCAGCCTCAGCAAACTTACACTGGTCATATCACATATGAATTTCTCTAGCTGTGCTCTAAACCCATTAACCACTAAATTTCTAAAAAAAAATGGTTATTAAATGCTTATTACCAGATATCTATAATTAATCAGTCCCTACAACAAGGAGTTTGTCCACAATTTTTTTAAACTGCAATTGTTAGGCCCCTGCTGAGGAAAAATAATCTTGATTCTTCTGTGTTCAGTAACTACAGATCAATCTCTAATCTAAAATCAACTTTTTCAATGCCAATACACTTGATGAAACATTTCAGTCTGGCTTCCGGGGAAACCACAGCACAGAAACAGTCTTGATTAAACAATCTGCAAGTTATTTGTGACTCAGGAAACTTGGCAATCCTTGTTCTCTTAGATCTGAGTGCTGCTTTTGACACCGTTGATCATGACATCCTACTTGACCGACTTTAGACATGGGTCAGTCTATCAGATCCTGTCTTAGACTGGTTCAGATCCTACTTAAGAAACAGGCCAGGGAATACTATGTTACACTGGGTACCTACACCTCTAGACGTTATATAATTTCTTGTGGTGTTCCTCAAGGCTCAATTTTGGGTCACCTGTTATTTAACCTGTATATGTTTCCTTTATGGATATGCATATGACACGCAACTCTATCTTTCACTTGCACCAGAATTCGATTTCCACACTACTGGACTGCATAGAAAGCATAAAATTGTGGATGTCCTAGAACTTTCTACAGCTAACAAAGATAAGACAGAGGTACTTCTATGACGTGCCGAGAACATCTATGCTCCACATCATGTTCATGCATTTGTTACGTCTAGACTACTGCAATAGCGTTTTTGCTGGGTTACCAAAGAGCTCTATTAAACACTTACAAAGAGTTCTGAATGCAACTACACGAATTCTCGCTCTAAAACTCAGATCCCTTCACTGGCTGCCTGTATCATTCAGAATTGAATTCAAGATCCTCTTAGATGGCTCTGAACATCAAATAGTAATTTGGTGGTTGTGCCTAAGACACGGCTAAAAATGGGCAAGTCACCCTTTAGTCATTTCTGGTCCCAAGCTGTAACTCTCTTCCTGACAATGAGCCATCAACACACTCAAAACACATTTGTTCACTAGGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_04138020_04144928.mRNA False 2586 mRNA 0.45 9 4138020 4145030
TU2672 True 2835 lncRNA 0.37 1 4144989 4147823

Neighbor

gene id symbol gene type direction distance location
CI01000000_04090995_04093696 SCOC, SCOCB coding upstream 44275 4090547 ~ 4093745 (+)
CI01000000_04082293_04087343 NA coding upstream 50001 4082293 ~ 4088019 (+)
CI01000000_04076566_04077988 NA coding upstream 59946 4076018 ~ 4078074 (+)
CI01000000_04036979_04044427 SEPT8.L, SEPT8B, SEPT8, SEPT8.S, SEPT8A coding upstream 93250 4036979 ~ 4044770 (+)
CI01000000_04027941_04033360 SFXN1 coding upstream 104198 4027837 ~ 4033822 (+)
CI01000000_04149689_04156988 CNOT6B, CNOT6, CNOT6A coding downstream 4659 4149689 ~ 4157477 (+)
CI01000000_04165348_04197615 NA coding downstream 20255 4165285 ~ 4197821 (+)
CI01000000_04225109_04225608 NA coding downstream 80079 4225109 ~ 4226616 (+)
CI01000000_04355381_04356090 NA coding downstream 210351 4355381 ~ 4356143 (+)
CI01000000_04368179_04392483 NA coding downstream 222809 4367839 ~ 4392990 (+)
G2294 NA non-coding upstream 18158 4118584 ~ 4119862 (+)
G2385 NA non-coding upstream 153200 3984464 ~ 3984820 (+)
G2293 NA non-coding upstream 262324 3872440 ~ 3875696 (+)
G2420 NA non-coding downstream 47094 4192124 ~ 4192354 (+)
G2427 NA non-coding downstream 56148 4201178 ~ 4201401 (+)
G2752 NA non-coding downstream 278686 4423716 ~ 4423954 (+)
G2755 NA non-coding downstream 280365 4425395 ~ 4425738 (+)
G2776 NA non-coding downstream 310962 4455992 ~ 4456314 (+)
G579 NA other upstream 2229212 1767917 ~ 1908808 (+)
G435 NA other upstream 2705166 1425121 ~ 1432854 (+)
G350 NA other upstream 3461083 671842 ~ 676937 (+)
G252 NA other upstream 3630948 503209 ~ 507072 (+)
G2774 NA other downstream 308748 4453778 ~ 4454232 (+)
G2850 NA other downstream 580956 4725986 ~ 4726482 (+)
G6811 NA other downstream 6059801 10204831 ~ 10321679 (+)
G6820 NA other downstream 6282193 10427223 ~ 10433018 (+)
G7018 NA other downstream 6833459 10978489 ~ 10980872 (+)

Expression


Co-expression Network