XLOC_006569


Basic Information

Item Value
gene id XLOC_006569
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 21076652 ~ 21079411 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013777
aaaaatgttacaaagtgtgtgcaatggtaaaacttaaatactgaacaatcaaTGCAAACTCTacggtagatcaacatctgtaaggtctGAACAATAATGATAGAATAAAACTAATTATGATCATCAAATCTAAGTTCTCAAGTAAAGATACTAactatcattatttaaatacatattgcaacaatagaaattgtgaagttggatgacCACATCACCCactatgctaaaaaatctttcagatgccATGCTATTGGCTGGGACGCACAGGAAAAGAAACCcaaaagccactctggcaacacccttacatccttttttatttacaatctcctcgcAGCTGCTACACAGCACTCATTTCCGCATTTGTTGTTATTTAGTGACAATCACGTTTTGGCTAATTAAATGAATTACGatctcttattatttattttttttatgttttaatgggTACAGGAGAGTAAtccggtggcacagtaggtagtgctgtcccctcacagcaagaaggtcggtggtttgagcctaggctgggtcagttggcatttctgaggggagtttgcatgttctccgcgtgtTCGCGTGGGGTtcctcgggtgctctggtttcccccacagtccaaagacatgcgatacaggtgaattgggtaagccaatttgtccgtagcgtatgagtgtgaatgaatgtgaatgggttttttccagtgatggattacagccggaagggcatctggggcatctgctgcataaaaacatgctggataagttggcggttcatttcgctgtggcaaccccagattaacaaagggattaggtcgaaaatgaatgaataattgagtaCAGATCAAAATGATTATTTCAATGTTAGGGAGTTGAGCTAGTTTACAAGTCATGCATCTTGCCTGACAAAACCTGAACTTGTGGATTCATGAACACTGTCTTTCTGTATGTCCTACATTCTCTTCATCTCAAGCTCGGAATGTCCCCTGTGACAATATTCCTTCAATGCAACCCCCAAAAGAACAGCTTCTTTTGATAGAACACActgttctgctttttttttttttttccaaacacaagaGATCCCTGCGGTTCCACAGATGCTCTTTGTGACTTTATAAACCTTCTTTCTGAACCTGTAGGGTCTCATGCAGGCTGGCAACCCAAAGCAAGCTTCAAACCATCAAACAACCCCAGCATGGTTTTTGCGTCTTGAATGTCAAAATATACGAATACAACCCACTCTTCTGTGGTTAAAAAGATTCTTACTCTTGTGTGCTTTCCAGTCTTTGTTTTACACGAAGGGGGATCATTGCTTTTAACATCTGACTTCAACTTTCACACATAGAACTGCTTATATATATGTTCAGAGTAAAGGCAAGCTCCCATTTAAGGATAAACTTAATGTGGAATATTTGGATGATAAGTGAATATTTGGATGATAATGTGGAAGATAAGTTTCAACTTTTTACAAAGTTTCTGACTTTTGTCTGCTCCTTTGACTCTGCAGCTAGATAGGGAAGTGTGAGAGAGAAAAGTTAAGGCTGCTCTTACTATAATACTTTTCCGAGTGTGTGCGCATATTTCCCCAAAAAACGATGGTTTCCAGAAACCAAAATGGACCAAGAATTGACACGTTAAAAAGTTTCTTCTCGAGTTATCCATTACCTCTGACATACTCCAAGTCTAGTGTGTCACATTCttgtgtgattgtgtgtatgtgtCGGTTCTAATCTGCAGTAATTCctataaaatctgtaaaatatgGTCTGAAAAGCCCCAGTATCTGCCCACTGCCACAGAGACAGATGAGACAGTGCTTTATCTCAGAGGAAAAGACAGAATTCAGTGTTAGACTTACTGCAAAGACCTTGTTATATCATCCATTTCTGctttaatattactttacaaacgcTGCAGAAAATTTGGCAAAGATATACGATAGTGATATATGTATAATTTTCCATTGGGTTGTGAGATTGTGGAAAGACTAAGTTGATTAATGTACAGTATGGAGACATGTTGGCTTGATAAATAACTGTGTGTTTTCAATGGACGCTGACAGACAATTTAACAATGTCTTGAAAGCACAAACTCTTTAAAGCAAACTGAGAGAAAGGGAGTCAAACAATATTTGCTTTTATAGCAGCTTGTGTCTTCTGACACATCGTCGGCCACTGTAGTAGAATAATGAGAAACTGCAGCTCATTATTGTTATATAACAAGTATATAATATTGCACTTATTATAACAAACCGTAAAATGTGTTGGTTATTATACTGTAGTGTTTTCTTTGGAAAAATACTGATTGGCCAGTGACAATGTTGTGCATTTGTGTGACATTTACACCAATTATTACCACTGGATTTTaaataacaatgtaaataatacaaataaatgaagagttcaaatgCCAAAGTGACATCTtcgaaaattagcatttttctcaggctcctgtgtCTTGATTCAGTAACTTCACATTAATGGGAAAAAATAGGTTATTGTCATCGATTTTAACATGACAAAATTGAGCATAAACATAAGAGgcagagaaaaatgctcattgtagaaaaaaaattcTTGATGGCACTAGTAGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013777 True 2587 lncRNA 0.38 2 21076652 21079411

Neighbor

gene id symbol gene type direction distance location
XLOC_006568 NA coding downstream 344764 20729834 ~ 20731888 (-)
XLOC_006567 CU633804.1 coding downstream 529154 20546967 ~ 20547498 (-)
XLOC_006566 si:ch1073-126c3.2 coding downstream 535862 20535159 ~ 20540790 (-)
XLOC_006565 gfra1a coding downstream 557651 20392656 ~ 20519001 (-)
XLOC_006564 si:ch211-270n8.1 coding downstream 695167 20379392 ~ 20381485 (-)
XLOC_006570 NA coding upstream 66703 21146114 ~ 21147382 (-)
XLOC_006571 tspan14 coding upstream 559043 21638454 ~ 21650404 (-)
XLOC_006572 mxtx1 coding upstream 577302 21656713 ~ 21660203 (-)
XLOC_006573 elovl6l coding upstream 587110 21666521 ~ 21672131 (-)
XLOC_006574 sprn coding upstream 603359 21682770 ~ 21688176 (-)
XLOC_006471 BX537274.2 misc downstream 10811747 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 20250427 825904 ~ 826225 (-)
XLOC_006563 AL954359.1 non-coding downstream 844902 20227045 ~ 20231750 (-)
XLOC_006562 AL954359.2 non-coding downstream 854518 20217490 ~ 20222134 (-)
XLOC_006559 NA non-coding downstream 1719641 19350851 ~ 19357011 (-)
XLOC_006577 NA non-coding upstream 846290 21925701 ~ 21939965 (-)
XLOC_006578 BX649385.1 non-coding upstream 1111950 22191361 ~ 22195168 (-)
XLOC_006582 CR550304.1 non-coding upstream 1698649 22778060 ~ 22784433 (-)
XLOC_006585 BX530068.1 non-coding upstream 1764419 22843830 ~ 22847484 (-)

Expression


Co-expression Network