trnar-ccu_54


Basic Information

Item Value
gene id trnar-ccu_54
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5447999 ~ 5448071 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_1442
gccccagtggcctaatggataaggcactggcctcctaagccagggattgtgggtttgagtcccatctggggtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1442 True 73 tRNA 0.59 1 5447999 5448071

Neighbor

gene id symbol gene type direction distance location
si:dkey-11f4.14 NA coding upstream 56813 5386472 ~ 5391186 (+)
igsf3l LOC107730347,LOC107670329,LOC107721263,LOC107549899 coding upstream 61730 5377251 ~ 5386269 (+)
cd58 NA coding upstream 71213 5369603 ~ 5376786 (+)
LOC122351829 LOC107670324,LOC107577992,LOC107578707 coding upstream 299828 5142408 ~ 5148171 (+)
usp37 usp37,LOC107670323,LOC107549772 coding upstream 309849 5128137 ~ 5138150 (+)
c9h3orf38 LOC107549925,LOC107730394,LOC107664011,LOC107728235,LOC107676993,LOC107549751 coding downstream 75489 5523560 ~ 5527595 (+)
LOC122351927 epha3,LOC107738584,LOC107676997 coding downstream 181051 5629122 ~ 5732070 (+)
LOC122351459 dip2a,LOC107752588,LOC107720936,LOC107670331 coding downstream 368774 5816845 ~ 5865374 (+)
LOC122351464 LOC107752607,LOC107720938,LOC107689504,LOC107549742,LOC107549895,LOC107576878 coding downstream 535818 5983889 ~ 6002637 (+)
LOC122351517 NA coding downstream 554704 6002775 ~ 6004352 (+)
G67979 NA non-coding upstream 55620 5373409 ~ 5392379 (+)
G67970 NA non-coding upstream 106710 5338969 ~ 5341289 (+)
G67961 LOC107689507,LOC107670332,LOC107752589,LOC107549740,LOC107549921,LOC107730419 non-coding upstream 134439 5307018 ~ 5313560 (+)
G67955 NA non-coding upstream 150994 5296655 ~ 5297005 (+)
G67888 NA non-coding upstream 346335 5101359 ~ 5101664 (+)
G68013 NA non-coding downstream 19470 5467541 ~ 5562170 (+)
G68056 NA non-coding downstream 298784 5746855 ~ 5764874 (+)
G68058 NA non-coding downstream 318268 5766339 ~ 5768260 (+)
G68069 NA non-coding downstream 348023 5796094 ~ 5797492 (+)
G68085 NA non-coding downstream 386069 5834140 ~ 5914281 (+)
trnam-cau_101 NA other upstream 349 5447579 ~ 5447650 (+)
trnar-ccu_53 NA other upstream 616 5447311 ~ 5447383 (+)
trnam-cau_100 NA other upstream 836 5447092 ~ 5447163 (+)
trnam-cau_99 NA other upstream 1241 5446687 ~ 5446758 (+)
trnar-ccu_52 NA other upstream 1507 5446420 ~ 5446492 (+)
trnam-cau_102 NA other downstream 245 5448316 ~ 5448387 (+)
trnar-ccu_55 NA other downstream 461 5448532 ~ 5448604 (+)
trnam-cau_103 NA other downstream 929 5449000 ~ 5449071 (+)
trnar-ccu_56 NA other downstream 1149 5449220 ~ 5449292 (+)
trnam-cau_104 NA other downstream 1417 5449488 ~ 5449559 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnar-ccu_20 NA coding NC_053135.1 CM020932.1 2816253 ~ 2816325 (-)
tiger barb (Puntius tetrazona) trnac-gca_81 NA coding NC_056709.1 CM032078.1 1139148 ~ 1139219 (-)