CI01000000_04576065_04586515 (ETFDH)


Basic Information

Item Value
gene id CI01000000_04576065_04586515
gene name ETFDH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 4576065 ~ 4586881 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_04576065_04586515.mRNA
GGGTGGAAATGGAACGCTTCGCTGATGAGGCAGACGTTGTCATTGTTGGTGGTGGTCCAGCCGGCCTGTCAGCAGCAATTCGGCTGAAGCAGCTGGCCAATCAGCATGAGAAAGAGCTGCGGGTTTGTGTGGTGGAGAAGGCGTCTCAGATCGGAGCACACACATTGTCTGGAGCCTGTCTTGAGCCCTCTGCACTCAATGAGCTTATTCCAGACTGGAAGGAGAGAGGGGCGCCACTGAACACTCCAGTTACAGAAGACAAATTTTCTATTTTGACAGAAAAATACCGCATCCCTATTCCAATATTACCAGGACTTCCGATGAATAACCATGGAAACTACTTAGTTCGTCTGGGGCATTTTGTACGCTGGCTTGGGGAGCAGGCAGAGGAGCTAGGAGTGGAGCTGTATCCAGGCTACGCAGCAGCTGAGGTGCTGTTTCATGAGGATGGAAGTGTGAAAGGAATTGCAACCAATGATGTTGGCATTGCTAAAGATGGCTCTCCAAAGGATGTGTTTGAGAGAGGCATGGAGCTCCACGCTAAGGTCACTCTGTTTGGGGAAGGCTGCCACGGACACCTGGCCAAGCAACTCTACAAGCAGTTCAATCTCAGGGAGAACTGTGAGCCGCAGACGTACGCTATTGGCCTCAAAGAGCTTTGGGTTATCGATGAGAAGAAGTGGCGCCCAGGACGGACAGAGCACACGGTTGGCTGGCCTCTGAACAGGAACACATACGGAGGCTCCTTCCTGTACCACCTCAATGAGGGAGAACCACTGGTGGCCCTGGGCTTTGTTTCAATTCCTAAACTGACCTTCCCAGGCGGTATGCTGATAGGGTGCAGTCCGGGCTTCATGAACGTGCCCAAGATCAAAGGCACTCACACGGCCATGAAGAGTGGCATGTTGGCAGCCGAGACAGCCTTCAGGAAAATCACAGATGAGAATCTGCAGTCGGAAACAGCAGGTCTCTATATTCCTGAATATGAGGAAGCTTTTAAAAAGTCCTGGATCTGGAAGGAGTTGTATTCTGTGAGGAACATCAGACCGTCTTTCCATAACTACTTTGGACTCTACGGAGGGATGGTATACACCGGAATCTTCTACTGGATTTTAAGAGGAAAAGAACCTTGGACACTGAAGCATAATGGTCTGGATGCTGCTCAGCTGAAGCCGGCAAAGAACTGTACACCTATTGAGTATCCAAAGCCTGATGGGAAGATCAGCTTTGATCTGTTGTCATCTGTAGCATTGAGTGGGACTAATCATGAGCATGACCAGCCGGTCCATCTGACGCTCAAAGACGACAGTGTGCCTGTGGCCCAAAACCTTGCGATTTACGACGGTCCCGAGCAAAGGTTCTGTCCCGCTGGTGTGTACGAGTATGTTCCTCTTGAGACGGGCGATGGCATGAGATTACAGATTAACGCACAGAACTGTGTCCACTGCAAGACCTGCGATATAAAAGACCCCAGCCAGAACATCAACTGGGTTGTGCCAGAGGGCAGTGGAGGACCAGCATACAACGGCATGTGATTTCAGCATTACGTATTTTTATTATCATAACCATTAGGGCACATCGCACAGATTTAAACTTTCAGGGCTACAGCTTTTGAAGACTTGAGAGTCTTTCTAATGTGCCTAAGGGAACAGAATGTCCTCGTATCCTGTCTGATATAAGCTTGAAGTGTAATTACATAAAGTGGCTTTGCATATTTCAGGTTTGATCAAATTGTACGAATTGAAAGAATTTTATATATAACGTCTAAGGAATGTGTCATAAAAGAAAAAGGATCATGCTGGATTGACAACCAGTGGACGTTTTAGCTCACCATGATACGGTTAACTGTAAACTGACAGTTTTGTATATATTGTCAAAGTTGGTTACTGTAGATGGTAGAA

Function

symbol description
etfdh Predicted to enable electron-transferring-flavoprotein dehydrogenase activity. Acts upstream of or within respiratory electron transport chain. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Used to study multiple acyl-CoA dehydrogenase deficiency. Human ortholog(s) of this gene implicated in multiple acyl-CoA dehydrogenase deficiency. Orthologous to human ETFDH (electron transfer flavoprotein dehydrogenase).

GO:

id name namespace
GO:0004174 electron-transferring-flavoprotein dehydrogenase activity molecular_function

KEGG:

id description
K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_04576065_04586515.mRNA True 1901 mRNA 0.48 10 4576065 4586881

Neighbor

gene id symbol gene type direction distance location
CI01000000_04547587_04562715 RXFP1 coding upstream 13228 4547587 ~ 4562837 (+)
CI01000000_04462428_04462831 NA coding upstream 112953 4462428 ~ 4463112 (+)
CI01000000_04451252_04452143 NA coding upstream 123054 4451130 ~ 4453011 (+)
CI01000000_04368179_04392483 NA coding upstream 183075 4367839 ~ 4392990 (+)
CI01000000_04355381_04356090 NA coding upstream 219922 4355381 ~ 4356143 (+)
CI01000000_04661351_04667059 NA coding downstream 74470 4661351 ~ 4667087 (+)
CI01000000_04698746_04717749 RAPGEF2 coding downstream 111160 4698041 ~ 4718908 (+)
CI01000000_05008086_05008382 NA coding downstream 421122 5008003 ~ 5008641 (+)
CI01000000_05030001_05137032 FSTL5 coding downstream 443120 5030001 ~ 5137032 (+)
CI01000000_05173896_05177992 QDPRA coding downstream 587015 5173896 ~ 5178085 (+)
G2847 NA non-coding upstream 4471 4571357 ~ 4571594 (+)
G2845 NA non-coding upstream 6128 4569731 ~ 4569937 (+)
G2795 NA non-coding upstream 91250 4484583 ~ 4484815 (+)
G2793 NA non-coding upstream 96871 4478985 ~ 4479194 (+)
G2792 NA non-coding upstream 99300 4476557 ~ 4476765 (+)
G2850 NA non-coding downstream 139105 4725986 ~ 4726482 (+)
G2827 NA non-coding downstream 140107 4726988 ~ 4727323 (+)
G2858 NA non-coding downstream 154495 4741376 ~ 4741768 (+)
G3041 NA non-coding downstream 259792 4846673 ~ 4848642 (+)
G3081 NA non-coding downstream 330258 4917139 ~ 4917501 (+)
G2774 NA other upstream 121833 4453778 ~ 4454232 (+)
G579 NA other upstream 2667257 1767917 ~ 1908808 (+)
G435 NA other upstream 3143211 1425121 ~ 1432854 (+)
G350 NA other upstream 3899128 671842 ~ 676937 (+)
G252 NA other upstream 4068993 503209 ~ 507072 (+)
G6811 NA other downstream 5617950 10204831 ~ 10321679 (+)
G6820 NA other downstream 5840342 10427223 ~ 10433018 (+)
G7018 NA other downstream 6391608 10978489 ~ 10980872 (+)
G7153 NA other downstream 6657576 11244457 ~ 11245633 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015971 etfdh,LOC102777291,LOC106604511,LOC107758565,LOC104941522,LOC102789087 coding CM030132.1 CM030132.1 31988287 ~ 31993019 (-)