G6856 (LOC107736226,LOC107598471,LOC107700840)


Basic Information

Item Value
gene id G6856
gene name LOC107736226,LOC107598471,LOC107700840
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26809948 ~ 26865737 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU10026
ATTCAGTTTTTCAGCAGATAAAAGCGACGTTTATTAATAAGTGTTGCTTTACAAAAGTGAGGCAAATGATTCTGTAGCACAGGTTAATGACAGTGAGACGAAGCAAGCGTAGAGAAGCACACATCTATGGCGTCGTTAGAATTAACCAATTTCACTCATTTTCTCCCAAATTGAAAAGAACGTTTTTAAATGAGGTTTAGTCCTAATCTGAGGCTCCTCCTGAGACCCTAACGGCCGCTGTCACGACATCATCAGATCAGCTGACGTTCTAAACCTGATGTGATTGGCTCTGCTCGTTCCTAGGCGGTTACCTTAATCAGGCCAGGCGCCATCTTGGATCTAAagatttttaaacacttttctgAACCCTTGATGAGCCGAACAATCAGCATGCCGTCAACCGTCCAATCCCGCGGCGCTGCCCTGACTCAGGCCTATAAACACGGTCGCTTGTTCGCTTTGGGTTTTAGACGTGATTTGTTCTCTGCAGATAGTTTTTAAATCATGTGAGCTGCACGGTAACTTCTACTGACTAATGCATTAACAAGACAAGCGctttttttttc
>TU10030
ATTCAGTTTTTCAGCAGATAAAAGCGACGTTTATTAATAAGTGTTGCTTTACAAAAGTGAGGCAAATGATTCTGTAGCACAGGTTAATGACAGTGAGACGAAGCAAGCGTAGAGAAGCACACATCTATGGCGTCGTTAGAATTAACCAATTTCACTCATTTTCTCCCAAATTGAAAAGAACGTTTTTAAATGAGGTTTAGTCCTAATCTGAGGCTCCTCCTGAGACCCTAACGGCCGCTGTCACGACATCATCAGATCAGCTGACGTTCTAAACCTGATGTGATTGGCTCTGCTCGTTCCTAGGCGGTTACCTTAATCAGGCCAGGCGCCATCTTGGATCTAAagatttttaaacacttttctgAACCCTTGATGAGCCGAACAATCAGCATGCCGTCAACCGTCCAATCCCGCGGCGCTGCCCTGACTCAGGCCTATAAACACGGTCGCTTGTTCGCTTTGGGTTTTAGACGTGATTTGTTCTCTGCAGATAGTTTTTAAATCATGTGAGCTGCACGGTAACTTCTACTGACTAATGCATTAACAAGACAAGCGGTTTTTTTTCGTTCCGTGACGCTCGGCGTGCGGTTTAGCCGGCGAACCCGATCTCCTTGTAGTAAGCGTCGATGTCCCCGATCACGACCTCCATGACCCTCCGGAGCGCGCTCTGTCCAGCCCCGTCCAGGCCCGCCTTCTCCGCCATCACCTTCACCAGCACCTCCGTGAtcagctgaacacacaGAAGTGAAGGTCAGGCTGTGGCCGAAAGACTCAAATGTTACCCTGAAGTTGTTGAGGGTGATCTTGTGTATGTTGGCGTGAGAGGTGGCCAGCGGTTTGAGGATGGCAGCGTGGTCTCCTCTGGCCTTCAGCAGCTCGCCCAGCTTCTTCAGCACGGTCGCTCCGTGGGACGCCACCGCCGCGTTTCCCGCCAGATCGGACTGAGAGATGCCCACGAACTTGGGGAACAGCTTCTGAGTCTCCGGGTGCTCCTTAAACAACGGGTCAGGACTTCTCCTCCGTGACCCGCGAAGTCGGCCTCCACGGCCCCCCAGCATTTCAGAACCTGGTCGAAATCGGCCATTGTCTGCGTGAGGAAACAAACCAGAAGAGACGCACCTGTCGTTAGTGACCAGCGCTTCGGCCGCTTGGAACAGCGCTTGCTCCGTTGACGAAGGCGTTTGTGGGCGACGCGTTTCAGTGTGAGCCGTTCAGATTAGCATCACATGTCCTGCGCTTCACTCATGACGGGTATTAAGCCACTTCCAGCCGGAAAGCTACTTTAAAACTATACGCATTGAAGAAATGCGGCTCATATGACCTCCTGAACCCATGTCAGGCGGGAGAGCATTATATATAGCGCTCTTGTTTCCAcacattaaatttgtttttagatgAACGGCTGACCTCGAAATTTGACCTCGAAAGAACTCATTAGCAGCGTTCGGCCAATACATAGACTTTAACATGGATCGTTTTCAGTCGGCATTCATTTGCACAATAAGTGGCATTAATCAAAGCAATGTAGCATCTATCGTAGTTTAATAAACCCCGCAGTGAAGTTCATTGGAGGCTGCAGTGATCTGGAAAACGTCCCTGACCTTCAGGATGTCCAGTTTCACTGAGCGCTCCGCGGATCCCGTCTCGTCCCGcaccactcacacactctctttctttttttttatgcactttttcaATTCAGTTTGGACTTTTTTGAGTGTTTGCCCTTTCCTTTACgctttttctttctcagcaAATCCTGCCATGGACtatattttcattcatcattattaaatcttatttgattattttacgATGTCTCTGAATTAGTTTAAAGTTACGATTtcgttttaactttttaaatgcgCTACTTTAttcttctcggacgcttttttAATTGCgattatactttttttgcacgttttccttttgttaaaaaaattattctgcgACATAATAATTACCTTTGAGTTTAATTTAAGCAATACAGgtacagttaataaaaaaacccatcttaaatatgaaaatgaccTCTATTTACATCTTTTTCTTCTGCGCAAAGCATTATAAAGTCCAGTCAAGCTCCTTACCGATATCGGCGTCTTCTCTGTAGAGTGTGTGACTGGATGTGGCTTTGGAAAACTCCCCAAATGAGCTCAGATCATCACTTTTCCCCACTTTCACCTTTTATACAGCGTCCCCGTGATG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10026 False 566 lncRNA 0.43 2 26809948 26865737
TU10030 True 2208 lncRNA 0.46 3 26863103 26865737

Neighbor

gene id symbol gene type direction distance location
slc25a23a slc25a23a,LOC107747161,LOC107594260,LOC107703801 coding downstream 11934 26787308 ~ 26798014 (-)
LOC122350383 khsrp,LOC107703803,LOC107594262,LOC107700847,LOC107598477 coding downstream 23048 26778467 ~ 26786900 (-)
crtac1a crtac1a,LOC107700849,LOC107598482,LOC107747162 coding downstream 36128 26767286 ~ 26773820 (-)
avpi1 LOC107730030,LOC107700857,LOC107598489,LOC107703811 coding downstream 70908 26734472 ~ 26739040 (-)
cdc25d LOC107598551,LOC107700789,LOC107729831 coding downstream 82516 26722519 ~ 26727432 (-)
pane1 cenpm,pane1 coding upstream 4557 26870294 ~ 26871984 (-)
zgc:158803 zgc:158803,LOC107700834,LOC107747154,LOC107703792,LOC107598467,LOC107709610,LOC107594252,LOC108411937 coding upstream 6919 26872656 ~ 26878150 (-)
mri1 mri1,LOC107700835,LOC107594353,LOC107703717,LOC107598470 coding upstream 13330 26879067 ~ 26891282 (-)
cc2d1a cc2d1a,LOC107747148,LOC107594251,LOC107598465 coding upstream 28075 26893812 ~ 26907012 (-)
nanos3 NA coding upstream 45321 26911058 ~ 26911816 (-)
G6870 NA non-coding downstream 45468 26760004 ~ 26764480 (-)
G6874 NA non-coding downstream 51656 26754732 ~ 26758292 (-)
G6873 NA non-coding downstream 60992 26748723 ~ 26748956 (-)
G6827 gprc5b,gprc5bb,LOC107729503,LOC107578286,LOC107700862,LOC107598492,LOC107709629,LOC107703814 non-coding downstream 103120 26653242 ~ 26706828 (-)
G6834 NA non-coding downstream 119458 26689354 ~ 26690490 (-)
G6887 NA non-coding upstream 67395 26933132 ~ 26942207 (-)
G6923 NA non-coding upstream 128701 26994438 ~ 26994699 (-)
G6926 NA non-coding upstream 140910 27006647 ~ 27007143 (-)
G6927 NA non-coding upstream 141766 27007503 ~ 27007987 (-)
G6929 NA non-coding upstream 143419 27009156 ~ 27009552 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 6994 26801910 ~ 26802954 (-)
LOC122353745 slc9a3r2,LOC107729606 other downstream 286546 26454250 ~ 26523402 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other downstream 392051 26416859 ~ 26417897 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other downstream 674462 26130788 ~ 26135486 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other downstream 946161 25831324 ~ 25863787 (-)
si:ch211-286b5.5 NA other upstream 51932 26917669 ~ 26920034 (-)
LOC122349164 NA other upstream 118807 26984544 ~ 26992582 (-)
LOC122344379 NA other upstream 330501 27196238 ~ 27202628 (-)
LOC122343833 LOC107749248,LOC107594233,LOC107703686 other upstream 374587 27240324 ~ 27255067 (-)
LOC122344630 LOC107578363,LOC107571875,LOC107575964,LOC107575480,LOC107571874,LOC107574523,LOC107576205 other upstream 509580 27375317 ~ 27385079 (-)

Expression


Co-expression Network