c1h19orf53 (zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096)


Basic Information

Item Value
gene id c1h19orf53
gene name zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26801910 ~ 26802954 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU10045
AGTCTCTCTGTTTCCGGTTGCGTTCAAGCGATAGAAAATGGCTCAAGGCAAACAGAAATTTAAAGCGCAACGACCCGGAGGAGCTAAAAAGCAACAACAGAAGCCGAAAGGACCGAAGAAAGGAGGAAGGATCATCGCTCCCAAAAAAGCTCAGGTGGTCCAGCAGCAGAAGCTGAAGAAGGGTTTGGAGGTGGCCATCAGGAACAGGATTGAGCACGAAGTCACGCAGAAGGCCAGCACGTCCCTTCACAAGAAACTGAGCGTGCTGAAGACTCCCGCGGGGAAGAGCGGCGGCGCTGGACCTCCAAAACCCGGACCATCCAAGTCCACCTGACACCAGAACACTGCGGGGCCATGGACCGCCGCTAGAGGGCGCCACCGcgctataaatataaatacgtTCACTACTTTCTGTGATAGgtttatttttagaaacagCAAAATATGGTGTGGAATATGACGTATGTGATCTTTTAGACTGTGCttatatttatgcaataaaaCGAGAGAGCATCGTTAGCTTTCATGATGCctaaattgtaactttttttttggtcgtGGGAAAGCAAAGcggttaatatatttataattatacgCGACTCTGGACCGCAAAAGGAGGGATGTGTTTTCAAACATCGATGTGTGGTCTGTTAGGATGCCGGAGATGCAAAAATCTggatggtgcaaaaaaaaaaaaaaaaaaaaaatctatatattgagaaaatcacatttaaaattgtccaaatgaattcttagcaatgcacgttaatcaaaaataaagtagcAAATTTTCAAC
>TU10046
AGTCTCTCTGTTTCCGGTTGCGTTCAAGCGATAGAAAATGGCTCAAGGCAAACAGAAATTTAAAGCGCAACGACCCGGAGGAGCTAAAAAGCAACAACAGAAGCCGAAAGGACCGAAGAAAGGAGGAAGGATCATCGCTCCCAAAAAAGCTCAGGTGGTCCAGCAGCAGAAGCTGAAGAAGGGTTTGGAGGTGGCCATCAGGAACAGGATTGAGCACGAAGTCACGCAGAAGGCCAGCACGTCCCTTCACAAGAAACTGAGCGTGCTGAAGACTCCCGCGGGGAAGAGCGGCGGCGCTGGACCTCCAAAACCCGGACCATCCAAGTCCACCTGACACCAGAACACTGCGGGGCCATGGACCGCCGCTAGAGGGCGCCACCGcgctataaatataaatacgtTCACTACTTTCTGTGATAGgtttatttttagaaacagCAAAATATGGTGTGGAATATGACGTATGTGATCTTTTAGACTGTGCttatatttatgcaataaaaCGAGAGAGCATCGTTAGCTTTCATGATGCctaa
>XM_043238058.1
TGGAGACTTTTATTCTATGTCGTGTCCTAAGTCTCTCTGTTTCCGGTTGCGTTCAAGCGATAGAAAATGGCTCAAGGCAAACAGAAATTTAAAGCGCAACGACCCGGAGGAGCTAAAAAGCAACAACAGAAGCCGAAAGGACCGAAGAAAGGAGGAAGGATCATCGCTCCCAAAAAAGCTCAGGTGGTCCAGCAGCAGAAGCTGAAGAAGGGTTTGGAGGTGGCCATCAGGAACAGGATTGAGCACGAAGTCACGCAGAAGGCCAGCACGTCCCTTCACAAGAAACTGAGCGTGCTGAAGACTCCCGCGGGGAAGAGCGGCGGCGCTGGACCTCCAAAACCCGGACCATCCAAGTCCACCTGACACCAGAACACTGCGGGGCCATGGACCGCCGCTAGAGGGCGCCACCGcgctataaatataaatacgtTCACTACTTTCTGTGATAGgtttatttttagaaacagCAAAATATGGTGTGGAATATGACGTATGTGATCTTTTAGACTGTGCttatatttatgcaataaaaCGAGAGAGCATCGTTAGCTTTCA

Function

symbol description
zgc:136864 Orthologous to human C19orf53 (chromosome 19 open reading frame 53).

NR:

description
PREDICTED: leydig cell tumor 10 kDa protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10045 True 796 TUCP 0.50 3 26801910 26802925
TU10046 False 536 TUCP 0.48 3 26802170 26802925
XM_043238058.1 False 555 mRNA 0.49 3 26802180 26802954

Neighbor

gene id symbol gene type direction distance location
slc25a23a slc25a23a,LOC107747161,LOC107594260,LOC107703801 coding downstream 3896 26787308 ~ 26798014 (-)
LOC122350383 khsrp,LOC107703803,LOC107594262,LOC107700847,LOC107598477 coding downstream 15010 26778467 ~ 26786900 (-)
crtac1a crtac1a,LOC107700849,LOC107598482,LOC107747162 coding downstream 28090 26767286 ~ 26773820 (-)
avpi1 LOC107730030,LOC107700857,LOC107598489,LOC107703811 coding downstream 62870 26734472 ~ 26739040 (-)
cdc25d LOC107598551,LOC107700789,LOC107729831 coding downstream 74478 26722519 ~ 26727432 (-)
vps54 vps54,LOC107709616,LOC107700845,LOC107598476 coding upstream 454 26803408 ~ 26819171 (-)
peli1a peli1a,LOC107700844,LOC107747159,LOC107598475,LOC107709617,LOC107594259,LOC107703798 coding upstream 18119 26821073 ~ 26833754 (-)
sertad2a NA coding upstream 47275 26850229 ~ 26853814 (-)
rab1aa rab1a,LOC107598472,LOC107747156,LOC105021598,LOC107666439,LOC107676578,LOC107594256,LOC107601860 coding upstream 54503 26857457 ~ 26861770 (-)
pane1 cenpm,pane1 coding upstream 67340 26870294 ~ 26871984 (-)
G6870 NA non-coding downstream 37430 26760004 ~ 26764480 (-)
G6874 NA non-coding downstream 43618 26754732 ~ 26758292 (-)
G6873 NA non-coding downstream 52954 26748723 ~ 26748956 (-)
G6827 gprc5b,gprc5bb,LOC107729503,LOC107578286,LOC107700862,LOC107598492,LOC107709629,LOC107703814 non-coding downstream 95082 26653242 ~ 26706828 (-)
G6834 NA non-coding downstream 111420 26689354 ~ 26690490 (-)
G6856 LOC107736226,LOC107598471,LOC107700840 non-coding upstream 6994 26809948 ~ 26865737 (-)
G6887 NA non-coding upstream 130178 26933132 ~ 26942207 (-)
G6923 NA non-coding upstream 191484 26994438 ~ 26994699 (-)
G6926 NA non-coding upstream 203693 27006647 ~ 27007143 (-)
G6927 NA non-coding upstream 204549 27007503 ~ 27007987 (-)
LOC122353745 slc9a3r2,LOC107729606 other downstream 278508 26454250 ~ 26523402 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other downstream 384013 26416859 ~ 26417897 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other downstream 666424 26130788 ~ 26135486 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other downstream 938123 25831324 ~ 25863787 (-)
LOC122353196 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 1086206 25714102 ~ 25715704 (-)
si:ch211-286b5.5 NA other upstream 114715 26917669 ~ 26920034 (-)
LOC122349164 NA other upstream 181590 26984544 ~ 26992582 (-)
LOC122344379 NA other upstream 393284 27196238 ~ 27202628 (-)
LOC122343833 LOC107749248,LOC107594233,LOC107703686 other upstream 437370 27240324 ~ 27255067 (-)
LOC122344630 LOC107578363,LOC107571875,LOC107575964,LOC107575480,LOC107571874,LOC107574523,LOC107576205 other upstream 572363 27375317 ~ 27385079 (-)

Expression


Co-expression Network