LOC122344379


Basic Information

Item Value
gene id LOC122344379
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27196238 ~ 27202628 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU10183
TGAAGACGTACTATAAGACACAGCAAACAATGGATATAGAggatatttatcaaaatgttgATCGCAGAAATATTAAGAACTCAACTGGACACCAAACTCAGAGTCACGAccaggatgaaagaaaagatctAAAACacaGAGGAAGTAGATGTTTGGTGTTGATCACAGCGAGTCTCGGGATCATTTGTGTTCTTCTGCTGGTCTTCATCATTCTGCTGAACATCTCCATCACAGCAGAGAGAGACCTGATAAAGAGTTACAAGAACACGGCTGAAGAGCTCAATCAAACCATCAACGTCTTACAGGACAATAACACTGAACTAATGACTGAAAAACACCAGCTGCAGGACAACTTCAGCTCTTTGAGTCAGAAGAAACTGGAGCAGGAGACCAGAGTCAAAGATCTCACTGCTGAGAAAAAACAGTTACAGGGAAGTCTTGACTCTTTGAGTCAGAAGAAGCAGGAGTTAGAAAGTAAAGTCAGGTCTCTGAGTGATGAACTAAACATGGACGCTTCTAAACGAGtttgttttttcatgccCAATGAGGAGAAGAGCTGGTCTGAGAGCAGACAGTACTGCAGGGATCGTGGAGCTGATCTGGTCATCATCAACACTGAAGAGAAGCAGAGATTCATATCTTCATTCATCAAGGAGAGAGTGTGGATCGGTTTGTCTGACACAGAGCAGGAAGGCAACATGAAATGGGTGGATAATACAGCAATGAAGCAAGGGT
>XM_043238119.1
AGTTCCTGTGAAGACAGTCCTAAAAATACTGTTCAGTATTTTAACGATCACGGCTCATCTGTGAAGACGTACTATAAGACACAGCAAACAATGGATATAGAggatatttatcaaaatgttgATCGCAGAAATATTAAGAACTCAACTGGACACCAAACTCAGAGTCACGAccaggatgaaagaaaagatctAAAACacaGAGGAAGTAGATGTTTGGTGTTGATCACAGCGAGTCTCGGGATCATTTGTGTTCTTCTGCTGGTCTTCATCATTCTGCTGAACATCTCCATCACAGCAGAGAGAGACCTGATAAAGAGTTACAAGAACACGGCTGAAGAGCTCAATCAAACCATCAACGTCTTACAGGACAATAACACTGAACTAATGACTGAAAAACACCAGCTGCAGGACAACTTCAGCTCTTTGAGTCAGAAGAAACTGGAGCAGGAGACCAGAGTCAAAGATCTCACTGCTGAGAAAAAACAGTTACAGGGAAGTCTTGACTCTTTGAGTCAGAAGAAGCAGGAGTTAGAAAGTAAAGTCAGGTCTCTGAGTGATGAACTAAACATGGACGCTTCTAAACGAGtttgttttttcatgccCAATGAGGAGAAGAGCTGGTCTGAGAGCAGACAGTACTGCAGGGATCGTGGAGCTGATCTGGTCATCATCAACACTGAAGAGAAGCAGAGATTCATATCTTCATTCATCAAGGAGAGAGTGTGGATCGGTTTGTCTGACACAGAGCAGGAAGGCAACATGAAATGGGTGGATAATACAGCAATGAAGCAAGGGTTTTGGCTTAAAGGTGAGCCAAATAATCAAGATGGAAATGAGGACTGTATTGAACTGATACCTTCACATCCCGTCCTGAACAACTGGAATGATCTGCCAtgttcacaaaagaaaaaagtgttttgtgagAAATAGCATATCAACCCTTTTTGTGGTTTTGGTGTGAAGTTGATATTCATTTACAAGGAAAATATAAATTTGCCTTTTTAGATACAATTAGGCAAAGGTTGATATAAATCGATTTCAATGCAATTTCGGTGTTTAAAATACAGGACCATCTCAACGTCTAGCTGAAGAACCACTTTTCCACAAACACCAGAGTCGAAGCAAAATGTGTCtttctgcagctttgtttttgttttctgtagtttctgtaaaatctgtacttttataaaaaaaaagatccaggTGGAAATGAGGACTGTATTAAACTGATGCTTTGAGATCCTGTCTTGAACAGATCTGCCTCGCTCAGAAAAGAGAAGCAGGTTTGATcctgtcttttgtttttaattgaagtGTTGCATGAAATGATTTGTGATTGGTTATGTTTTTGATTGAGGTCTCTTAAATACCGCATTTTTATGACACTTTTAAGGCACAATagtctttttaatgaattttttctagtctgcattatttatatgctttatttagAACCTGAGGATGACTTGGTAAACCGTACATTGTCACAATCctgtttattgtctttatttttataaaaaaaaacagttttgctttCTATTCTGTCTTTATGGTGATGACAGGTGCTTTTGTCCATATTATGAATTTCCTGGAACATCTTAAGTAAAGTTTTATGAATCTGTTTTGGTCTTTTAGCCCGAGAGCACCCTCCAGCTTTGAGTATGaatgacacacacactgcacgAGAGTGTTTAGCAATCTAGATATTCACCCCGGCCTCTGAAAGCCTTTATGTGAACAAACTTGCCCCCCAAAAAATGTATCTGCATGATGCCTTACTTAATATCCGGTGACTTTAAAGGTGTGACTTGAGATGACTTGACTTGTGTTGGAAAGTTAATGGGATTGAAATGTACTGTGAAAATTTCATGAGCATTACGCAGTGTTTATTATCAAATTAACAGTAACTCGGTGTGAAATTGCCATAAAACTAAGCGTACTATAAGTGTACCagtgtttgtaaaaacaaagtatatcattataattgtcaccaagccagcagagggagcccttacctctaaGTGATCTGtgttcacttcctctgctgctacttcctcgtccaggactataaagactgtagcaggcccctcacctgctgGTTACATTGTTCTATTGTTAGCTTGTCGTTGGATTGTCGTTTCTAGTTTTCCTTGTGTCTCCCGAgtcatagattctttggttttgaccctgcctgtctctgatactgtgattgtttgctgcctgacccgacctctgcctgtttttgggttctgttgttgccttgcctcttatactcctgtttgctgtgattcgacgcctgcctgctttgaccatgcctttgttcaataaaagccaGCTTCTCAAACTGCTTTGCAACTATTGACTTATTCAGGTTTCATCtttgact
>XM_043238120.1
CTGTACTCTACTGTAAGAGCAAATCATGGAATCAGGGACCTTTTATGtctgcagaaatattaataacagaTCTGGACCTCAAACACAGAGTCGCTGCGAGAATGAAGGAAAAGATCGGAAGAGAAGAGGAAGTAGATGTTTGGTGTTGATCACAGCGAGTCTCGGGATCATTTGTGTTCTTCTGCTGGTCTTCATCATTCTGCTGAACATCTCCATCACAGCAGAGAGAGACCTGATAAAGAGTTACAAGAACACGGCTGAAGAGCTCAATCAAACCATCAACGTCTTACAGGACAATAACACTGAACTAATGACTGAAAAACACCAGCTGCAGGACAACTTCAGCTCTTTGAGTCAGAAGAAACTGGAGCAGGAGACCAGAGTCAAAGATCTCACTGCTGAGAAAAAACAGTTACAGGGAAGTCTTGACTCTTTGAGTCAGAAGAAGCAGGAGTTAGAAAGTAAAGTCAGGTCTCTGAGTGATGAACTAAACATGGACGCTTCTAAACGAGtttgttttttcatgccCAATGAGGAGAAGAGCTGGTCTGAGAGCAGACAGTACTGCAGGGATCGTGGAGCTGATCTGGTCATCATCAACACTGAAGAGAAGCAGAGATTCATATCTTCATTCATCAAGGAGAGAGTGTGGATCGGTTTGTCTGACACAGAGCAGGAAGGCAACATGAAATGGGTGGATAATACAGCAATGAAGCAAGGGTTTTGGCTTAAAGGTGAGCCAAATAATCAAGATGGAAATGAGGACTGTATTGAACTGATACCTTCACATCCCGTCCTGAACAACTGGAATGATCTGCCAtgttcacaaaagaaaaaagtgttttgtgagAAATAGCATATCAACCCTTTTTGTGGTTTTGGTGTGAAGTTGATATTCATTTACAAGGAAAATATAAATTTGCCTTTTTAGATACAATTAGGCAAAGGTTGATATAAATCGATTTCAATGCAATTTCGGTGTTTAAAATACAGGACCATCTCAACGTCTAGCTGAAGAACCACTTTTCCACAAACACCAGAGTCGAAGCAAAATGTGTCtttctgcagctttgtttttgttttctgtagtttctgtaaaatctgtacttttataaaaaaaaagatccaggTGGAAATGAGGACTGTATTAAACTGATGCTTTGAGATCCTGTCTTGAACAGATCTGCCTCGCTCAGAAAAGAGAAGCAGGTTTGATcctgtcttttgtttttaattgaagtGTTGCATGAAATGATTTGTGATTGGTTATGTTTTTGATTGAGGTCTCTTAAATACCGCATTTTTATGACACTTTTAAGGCACAATagtctttttaatgaattttttctagtctgcattatttatatgctttatttagAACCTGAGGATGACTTGGTAAACCGTACATTGTCACAATCctgtttattgtctttatttttataaaaaaaaacagttttgctttCTATTCTGTCTTTATGGTGATGACAGGTGCTTTTGTCCATATTATGAATTTCCTGGAACATCTTAAGTAAAGTTTTATGAATCTGTTTTGGTCTTTTAGCCCGAGAGCACCCTCCAGCTTTGAGTATGaatgacacacacactgcacgAGAGTGTTTAGCAATCTAGATATTCACCCCGGCCTCTGAAAGCCTTTATGTGAACAAACTTGCCCCCCAAAAAATGTATCTGCATGATGCCTTACTTAATATCCGGTGACTTTAAAGGTGTGACTTGAGATGACTTGACTTGTGTTGGAAAGTTAATGGGATTGAAATGTACTGTGAAAATTTCATGAGCATTACGCAGTGTTTATTATCAAATTAACAGTAACTCGGTGTGAAATTGCCATAAAACTAAGCGTACTATAAGTGTACCagtgtttgtaaaaacaaagtatatcattataattgtcaccaagccagcagagggagcccttacctctaaGTGATCTGtgttcacttcctctgctgctacttcctcgtccaggactataaagactgtagcaggcccctcacctgctgGTTACATTGTTCTATTGTTAGCTTGTCGTTGGATTGTCGTTTCTAGTTTTCCTTGTGTCTCCCGAgtcatagattctttggttttgaccctgcctgtctctgatactgtgattgtttgctgcctgacccgacctctgcctgtttttgggttctgttgttgccttgcctcttatactcctgtttgctgtgattcgacgcctgcctgctttgaccatgcctttgttcaataaaagccaGCTTCTCAAACTGCTTTGCAACTATTGACTTATTCAGGTTTCATCtttgact

Function

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0044459 obsolete plasma membrane part cellular_component
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko04672 Intestinal immune network for IgA production
ko05150 Staphylococcus aureus infection
ko05145 Toxoplasmosis
ko05310 Asthma
ko05320 Autoimmune thyroid disease
ko05321 Inflammatory bowel disease
ko05330 Allograft rejection
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU10183 False 735 TUCP 0.43 4 27197905 27202567
XM_043238119.1 True 2386 mRNA 0.39 5 27196238 27202628
XM_043238120.1 False 2312 mRNA 0.40 5 27196238 27199802

Neighbor

gene id symbol gene type direction distance location
LOC122344463 NA coding downstream 177 27194089 ~ 27196061 (-)
LOC122344496 NA coding downstream 8509 27186219 ~ 27187729 (-)
LOC122344447 asf1bb,asf1b,LOC107747137,LOC107573603,LOC107703766,LOC107694608,LOC101069596 coding downstream 10336 27180727 ~ 27185902 (-)
LOC122344560 LOC107714107,LOC107698215,LOC107752624,LOC107653768,LOC107703693,LOC107558979 coding downstream 39989 27152145 ~ 27156249 (-)
LOC122344544 NA coding downstream 71516 27123332 ~ 27124722 (-)
c3a.4 c3a.4,LOC107749249,LOC107747139,LOC107703775,LOC107594303,LOC107572266 coding upstream 5931 27208559 ~ 27223761 (-)
c3a.6 c3a.6,LOC107703739,LOC107594231,LOC107749254 coding upstream 21277 27223905 ~ 27238733 (-)
dennd1c LOC107694614,LOC107594230,LOC107747169,LOC108258416,LOC107572265 coding upstream 77673 27280301 ~ 27289321 (-)
LOC122344156 LOC107578363,LOC107574523,LOC107576205 coding upstream 177370 27379998 ~ 27393878 (-)
LOC122344221 LOC107574524,LOC107578363,LOC107574523,LOC107576205 coding upstream 215325 27417953 ~ 27421722 (-)
G6949 NA non-coding downstream 104809 27064144 ~ 27091429 (-)
G6933 adgre9,LOC107747176,LOC107694597,LOC107752408,LOC107752624 non-coding downstream 183867 27012123 ~ 27012371 (-)
G6929 NA non-coding downstream 186686 27009156 ~ 27009552 (-)
G6927 NA non-coding downstream 188251 27007503 ~ 27007987 (-)
G6926 NA non-coding downstream 189095 27006647 ~ 27007143 (-)
G6981 NA non-coding upstream 94547 27297175 ~ 27297611 (-)
G6957 NA non-coding upstream 96798 27299426 ~ 27321856 (-)
G6982 NA non-coding upstream 99178 27301806 ~ 27302275 (-)
G6983 NA non-coding upstream 100472 27303100 ~ 27305694 (-)
G6956 NA non-coding upstream 110315 27312943 ~ 27314514 (-)
LOC122349164 NA other downstream 203656 26984544 ~ 26992582 (-)
si:ch211-286b5.5 NA other downstream 276204 26917669 ~ 26920034 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 393284 26801910 ~ 26802954 (-)
LOC122353745 slc9a3r2,LOC107729606 other downstream 672836 26454250 ~ 26523402 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other downstream 778341 26416859 ~ 26417897 (-)
LOC122343833 LOC107749248,LOC107594233,LOC107703686 other upstream 37696 27240324 ~ 27255067 (-)
LOC122344630 LOC107578363,LOC107571875,LOC107575964,LOC107575480,LOC107571874,LOC107574523,LOC107576205 other upstream 172689 27375317 ~ 27385079 (-)
G7105 epn3,epn3b,LOC107707724,LOC107571871,LOC107703747,LOC107745640,LOC107574648,LOC108411852 other upstream 552154 27754782 ~ 27939452 (-)
LOC122349330 LOC107571875,LOC107574524,LOC107703776,LOC107573813,LOC107707718,LOC107732931,LOC107703675,LOC107703672 other upstream 689273 27891901 ~ 28076645 (-)
nxnl1 nxnl1,LOC107748002,LOC107713785,LOC107571423,LOC107659782,LOC107690637 other upstream 1018271 28220899 ~ 28223247 (-)

Expression


Co-expression Network