G7550 (si:dkey-222h21.2,si:ch211-114l13.4,si:ch211-236p5.3,LOC107729025,LOC107575333,LOC107574376,LOC107575359,LOC107659785,LOC107576777,LOC107575507)


Basic Information

Item Value
gene id G7550
gene name si:dkey-222h21.2,si:ch211-114l13.4,si:ch211-236p5.3,LOC107729025,LOC107575333,LOC107574376,LOC107575359,LOC107659785,LOC107576777,LOC107575507
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28790466 ~ 28800856 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU11145
AAAGCTTTAGTGCAGCAGCTAGCAGCTGGTATTAGTCTTCTTCTCCCCTCATCTGATGTGTTGTATTTCTTGAGGTCTAGCTCATCCAGTGTCTCCTCTGACATCTGAAGCATGTAGGAGATTGTTGAGCAGCGAGCAGGAGAGAGTTTCTTCTCTGAGTGTTTGTCTGATTTTACAAACTCCTGAATCTCTCTGGACAGAGTCTGGTCTTTCACTTCCAGTAGACAGAGGAACAGATTGATGGATCTTTCAGTGGAAAGGTCATGTCCATCTCTGATCTTCTCTTTAATGTACTGTATGGTTCTCCTGATGCACTCTGagctgttctctgtgtgtgtcagtagatcctgtaagagtctctgattggactCCAGTGAGATGCCCATCAGGAACCGCAAGAGAAGATCTAGATGTCCAGATTTACTCTCAATAGCTTTATCAACTGCAATTTcaagtaaatgttttactgaaGCAAAATTCTTCATTTTCCCCATATAGTTGTACATACATAATAGTAAAACATATAGAAAGCAGCAAGAAACTCTTGAATGCTCAGATGAATGAAGCTATATACTTTTCTCTGATGAATCACAGACTCCTCCTTAAAGATCTCAGTGcaaatcccagaatacactgaGGCATCAGTGATGTCTATGCCACTCTCAATCAGGTCCTCCTCATAGAACATCACATTGGcattcatcagctgtttgaaagCAACTTCAGCAAGTTTCACAATCACATTTCTATCTCTCTTTTCATACTTCTGGTTCCTTGTGTTGATCTGAATCAACAGGAAGTGTATGTACATCTCAGTCAGAGTTTTGGGGATTTCTGCTCTCAGATCTTCTTCCAGTATCTTCTGAAGTACAGTGGATGAAATCCAGCAAAGACAgggatgtgacacatgatgtggaggcttcttgctcttctgatgtgtgagatgattctgctggcttgatgctggtcactgattctcttcctgaaatattcctccttctgaggcTCAGTGAATCCCTGAATTTCTGTCAGACGGTTGATGTATTTGGaggggatctgattggctgctgctggtctggaggtgatccagatgagagcagagggaagcagcTCTCCTTTCATGAGGTTTGACATCAACACACTCACTGATGAAGTCTCAGTCACATCACAAACTTTCTgatcatctgaaaacatcagtgtgattctgctttcatccagaccatcaaagatgaacacaactttaCACTCTCATAAATCTTTGAGTCCAGATCTTGAAGTTCAGGATGAAAGTCTGgcagaagtctgtgaagactGTACTGATCATCTCTgatcaagttcagctctcgaaatggaagaacaaacatgaaatctacatcttgattggcttttccctcagcccagtccagaatgaacttctgcacagaaaCGGTTTTTCCGATTCCAGCGatgcctttagtaagaa

Function

symbol description
si:dkey-222h21.2 Predicted to be involved in intracellular signal transduction.
si:ch211-114l13.4 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).
si:ch211-236p5.3 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11145 True 1462 lncRNA 0.42 2 28790466 28800856

Neighbor

gene id symbol gene type direction distance location
LOC122362864 LOC107739961,LOC107574374,LOC107742984,LOC107717634,LOC107574376,LOC107725412,LOC107724128,LOC107576777 coding downstream 113641 28674433 ~ 28676825 (-)
LOC122356533 LOC107571418 coding downstream 127220 28654009 ~ 28663246 (-)
LOC122356692 si:dkey-222h21.3,LOC107659785,LOC107571418,LOC107576777 coding downstream 138283 28645661 ~ 28652183 (-)
LOC122356986 si:dkey-222h21.3,LOC107659785,LOC107571418 coding downstream 146969 28634924 ~ 28643497 (-)
LOC122361856 LOC107575100 coding downstream 163674 28614050 ~ 28626792 (-)
LOC122355940 NA coding upstream 8356 28809212 ~ 28841535 (-)
LOC122349524 LOC107572981 coding upstream 92285 28893141 ~ 28898735 (-)
LOC122325105 slc27a1b,LOC107662711 coding upstream 98857 28899713 ~ 28913858 (-)
LOC122358117 LOC107571122,LOC107675016,LOC107709529,LOC107560588 coding upstream 114142 28914998 ~ 28924504 (-)
LOC122359935 LOC107709532,LOC107571128,LOC107674943,LOC107662715,LOC107719079,LOC107560584 coding upstream 123760 28924616 ~ 28928580 (-)
G7547 NA non-coding downstream 16300 28773354 ~ 28774166 (-)
G7492 NA non-coding downstream 42827 28311124 ~ 28747639 (-)
G7535 NA non-coding downstream 117832 28670921 ~ 28672634 (-)
LOC122326719 NA non-coding downstream 300957 28488581 ~ 28489509 (-)
G7521 NA non-coding downstream 358838 28431323 ~ 28431628 (-)
G7579 NA non-coding upstream 171038 28971894 ~ 28981118 (-)
G7591 NA non-coding upstream 214809 29015665 ~ 29017156 (-)
G7575 NA non-coding upstream 314640 29115496 ~ 29124052 (-)
G7574 NA non-coding upstream 355988 29156844 ~ 29158718 (-)
G7620 NA non-coding upstream 489905 29290761 ~ 29291343 (-)
G7527 LOC107575698,LOC107577169,LOC107575696 other downstream 264915 28523705 ~ 28525551 (-)
G7515 slc27a1b,slc27a1,LOC107662711,LOC107560569,LOC107739969,LOC108413363 other downstream 343875 28406182 ~ 28446591 (-)
G7508 LOC107739967,LOC107747700,LOC107716241,LOC107572978 other downstream 398413 28391039 ~ 28392053 (-)
G7475 NA other downstream 541943 28244128 ~ 28248523 (-)
nxnl1 nxnl1,LOC107748002,LOC107713785,LOC107571423,LOC107659782,LOC107690637 other downstream 567219 28220899 ~ 28223247 (-)
LOC122324333 NA other upstream 142132 28942988 ~ 28944618 (-)
G7563 ubl5,pin1,LOC107727173,LOC107685032,LOC107571794,LOC107662743 other upstream 248887 29049743 ~ 29132092 (-)
LOC122362981 LOC107662727,LOC107560596,LOC107685031,LOC107722572 other upstream 267126 29067982 ~ 29152545 (-)
LOC122325037 sh2d3a,LOC107662707,LOC107685029,LOC107560576,LOC107727164 other upstream 300830 29101686 ~ 29112734 (-)
G7569 gtf3c1,LOC107678316 other upstream 500951 29301807 ~ 29310598 (-)

Expression


Co-expression Network