LOC122325037 (sh2d3a,LOC107662707,LOC107685029,LOC107560576,LOC107727164)


Basic Information

Item Value
gene id LOC122325037
gene name sh2d3a,LOC107662707,LOC107685029,LOC107560576,LOC107727164
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29101686 ~ 29112734 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU11196
CACAGCATGTGCAGTCAAAGAGCAGCAGAGCAGTGTTGCGtggaaatgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaggccaGTATGAGAGTGTAATGCATGATGGGAAACGATGTCACACCTAACCTTTACGTGacattttgtttgaatttgttgaGTATCTTCTCAACATGTGTCACTTTCCTTCAGTCTTGTACTTTGAGGAGTTCTAGTCAGTGTTTGTTGAGTGTTTGTTGTGTAAATAAATCTAGCGTCTTGGATCCAGTGAGCTACAGGGACACGTCTTCTTCTCCTACAGTAACTTCtgatgagtgtgtttctacacAGTATGTTTGgagaaaacaataaacaacagGTCAGGCCATGGAGCAGTTCCTGGTGGTTTGTGGTGGTAAACGGACTCAGCTCCACCTCCTGGTGGAAAGACCAAACTAcaacttgtttattttctttatttactggGATGATCATGATCTAGCATCGCTTCTCTTCCTGGAGTCCCTACAAGTACAGACTTATAAGGTGTGCTTTTacctactttttaaaatactttttgcgTGTTTTATCTTAATTAATGACACTGGTAAGAGATTCCATAATTTCATTGCCCTGAAAATTAATACATgcaataatgattttattttttcatttatttattgcataaagATTCGCATCAGAGCTAAAAGAGCCCCTCTCGGGCCTATCATGGTTTATAATTTACCTGGAAGTCAAACCCACGAGCACGGAATGATCGTAATCTCGTCGGAGCGGTTAGAGGGTCGTTAGCAGATGCTTTCTCACACAACCGGAGCAGAAACCGATTCTGAGAAAGTCTGAATGTGTCTGAACCTGCAGACCGCCGCGCGCCCGGATTCCGGCGCTGTGATTGGCCGAGAGAGAGGACAGCGGCTGCAGCGGCCAATCAGAACGCAGCGCCTCAGGTGCCTCcatcagtgagagagagagagagagagagagagagagagagagagagagagagagagagagagacagagagagagagagagttcaacaaTATTAGATGAATGaaacataaagaaagaaagacagacgaAGGAACACGAGAAAATACAGCACAGCCTCAGACTCATGAACGCTCGCTCGATCGCGCGCTGGCTGACGCAGCTCGGGCTCGCGCAGTACACGAGCGCGCTGGAGAAGCACGCCTACGGCCTCGAGggtcTCCTATTAGTAACAGAAGATGATCTGAGACTGATGGGAGTTGAAGATCCAGATCACAGGGCGACCATCATAAATGAGCTACAGAAGCAGCAGCCGGAGAaagAGAAGAACCCCGTGGTGATGAGGGACGCTGTGAGCCGCAAGCACTCGTCTCTGGACCTGCTCAAACCCAGCGCTGACCTCTTCCGTCACAGCATTGTGCCTCGGCTGCGTCGCCGTGACAACCAGCGAGTCTCCGCCTCCTGCCTCCAGCTCCCCTCCCACACCCCCGAAGACCACACCCCCTCCACCAGACACAAACTCAGGTTTTCTTAGGACCGTCTCCCGTTCACACTCATTATCATACATCCACACTCAACGAGTGCCAAATGCAAGTAAAACGAGCTTTggtgagtaaaatattaatatattaatatataaaagtctcaaaaccaaagagataatCTTTAGAAAAGCTATGATTTGTCCACACCCCCCTTAAACACTTCTCTACGTCACAGagtgtgtttatttgcatagctccgcccaaatgtttactcaaagaaagaaggcggggCTGATATTCTGGCTGTACTTTAAGTAAGTCGTATTAAAACAACCTCCTTCTCGCTATTCAAACGAAGGGTGAAGTTAGTGCTTGTTGTTTCTCGTTCACGGATGCAGACATGATGTTATGTTTTCAACGCAACACATAAAAAGACGGTATAAGTCATCGTAATCAGTGATTATTACTAATACAATACaagccattacaaatgaggcatttgttagccaatcacagcgcactgggtagctggccaatcagagcacgcctctctttttgtttttagaaagacTAGCTTTTTTGGTTTCAAACCCAAAGTCTTGAATTAGCATATTCTAAAGAACCATCTGAATATAATGAAATTAGAACTAGCCCTGTAAAGCTTTCTTAAAAACACGTAATGCGTCTTTCCTCAATTATCCCTAAACTGTTTTGTTTACGTGTAGTTTAGCAGTTTCCGCTGTGACAACGTACCCCACACACTTTACCCTTCAATAGCCTAAAAAAcgagttacttttaaaagtttatttttttgctttctaaatgaataaatatatacaaatgctcatttgagggaaaaaaaaacatgtagtcCCTACAAAAGGTACACAAGTGAACTCTCTCAGTGTTTAGTCAGGTTTAGAAACATGTCTCAGCGCGCACTCGGCATTCTTCCGTGTGAACGCGCAAACCGCCTTGCGCAACGCGTGCCTCCGTGACGCAGCCGAGCGGGGCGTGAGCGGGTCGAGCCGGCACAGACCCGCCTCTGTCTGCGGCTTGGCGGGACTCCGGGGGCCTCGCGCGGCGCCGGACAGGTGAGTGCGCGCGGAATGCGAGGAATGCGCGAGGGGTAGCGGCGCGTGCGCGTGCGCGCGGCGGAGCGTGTGCGAACTCGTCGTCGCGCTGAGCTCGCGCGGAGGACCGCCGGTAACCGTGGCTGCTCGCGCTTTCAGCAGGAGGAAGAGTGTGACGGCCTTCATCAGTCAGGTGTTCTCAGGCCTGAAGGACATGGACTCTCTGAAgaaggagctggaggaggagctCAAACTCAGCACTGAGGATCTGAGGAGTCACGCCTGGTATCACGGACAGCGGCAGCGCgagggagCGGAGCAGTTGTTGAGTAGAGACGGGGAGTTTCTGGTGCGTGACTCCAGCTCCAGTGCGGGTGAATACGTCCTGAGCTGTATGTGGAGAAATCAACCCATGCACTTCAAGATCATACGCATCGTGCTGCGACCCAAACAGggttACACTCGGGAGCTCTTTCAGTTTGAGAACGAGCAGTTTGATAATATTCCAGCATTAATTCGCTTTCACGTCGGCGGGCGGCGTCCCATCTCGCATTCCACCGGAGCCATCATCTTTCAGCCAATCACACGCACTCTGCCTCTACGCATCATCAGCGAGCGCCAGGCTGCGAGGTCGTCAAGCTCCTCCCTCCTGTCACGGGCTCAGAGCAAGAGGCGGAGCCTGAGCTCCTCTCAGAAAGATACACTGCAGGTCAACAGCAAC
>XM_043219910.1
catcagtgagagagagagagagagagagagagagagagagagagagagagagagagagagagacagagagagagagagagttcaacaaTATTAGATGAATGaaacataaagaaagaaagacagacgaAGGAACACGAGAAAATACAGCACAGCCTCAGACTCATGAACGCTCGCTCGATCGCGCGCTGGCTGACGCAGCTCGGGCTCGCGCAGTACACGAGCGCGCTGGAGAAGCACGCCTACGGCCTCGAGggtcTCCTATTAGTAACAGAAGATGATCTGAGACTGATGGGAGTTGAAGATCCAGATCACAGGGCGACCATCATAAATGAGCTACAGAAGCAGCAGCCGGAGAaagAGAAGAACCCCGTGGTGATGAGGGACGCTGTGAGCCGCAAGCACTCGTCTCTGGACCTGCTCAAACCCAGCGCTGACCTCTTCCGTCACAGCATTGTGCCTCGGCTGCGTCGCCGTGACAACCAGCGAGTCTCCGCCTCCTGCCTCCAGCTCCCCTCCCACACCCCCGAAGACCACACCCCCTCCACCAGACACAAACTCAGCAGGAGGAAGAGTGTGACGGCCTTCATCAGTCAGGTGTTCTCAGGCCTGAAGGACATGGACTCTCTGAAgaaggagctggaggaggagctCAAACTCAGCACTGAGGATCTGAGGAGTCACGCCTGGTATCACGGACAGCGGCAGCGCgagggagCGGAGCAGTTGTTGAGTAGAGACGGGGAGTTTCTGGTGCGTGACTCCAGCTCCAGTGCGGGTGAATACGTCCTGAGCTGTATGTGGAGAAATCAACCCATGCACTTCAAGATCATACGCATCGTGCTGCGACCCAAACAGggttACACTCGGGAGCTCTTTCAGTTTGAGAACGAGCAGTTTGATAATATTCCAGCATTAATTCGCTTTCACGTCGGCGGGCGGCGTCCCATCTCGCATTCCACCGGAGCCATCATCTTTCAGCCAATCACACGCACTCTGCCTCTACGCATCATCAGCGAGCGCCAGGCTGCGAGGTCGTCAAGCTCCTCCCTCCTGTCACGGGCTCAGAGCAAGAGGCGGAGCCTGAGCTCCTCTCAGAAAGATACACTGCAGGTCAACAGCAACAACCttaggaGCGGCAGTCAGCCTGCTAATCTGGAGACAGTGGGGAGACCGCCACTACAGTCTGCTCAATCTGACAGCAACCTCCgcacagGTGTCCCACAGAGCTGTCCGTCACAGGACTCTAGCCCCGCCCCCGTCTCCCCGGTGTTCCGCACAGGAAGTGAGCCTGTCCTAAGCCCAGCCGCTTCCTGTGCCGCTCCGCCCAGTCAGTCGAGTCTCGGCGGCTGTCCTCTGCGTGGCTCTGATGGACAGCTGCATTCACGAGCTCCTCCCAAACCGCTGCGGATCTCCATCGTCTTCACCCCGACTGCGTCCGCCCCTGAGTCCGATTCCTCCGGCCTCTATGGTGAGCTGGTGCCGCAGGTCCCCATCACCATGCTGCCCAAAGGTCACGCGGCGCGGCTCCGTGCTCAGGAGCGATGGACCAGCCGCGCGCGTCTCACCGAGACCAGCTTTGGCTTCCTGGAGGCGCAGAagctggaggaggagcggcGGGAGAGCGAGGCGGTGGAGGACGAGCAGAGAGACTGGCGCTTCGAGCGGCCGCTGACCGAGACCACGTCCTGCTTCCGGCTCCACGACTTCCGCTCGCTCATGCTGCCCGACAACAACCGCCCGCTGGATCAGAGCGTCCTGCTGAAGGTCAAGGAGCTGCTGACGGACAGCGACGCCAGGACCACCGCTCTGCACATGCTCAGCGTCAACTGCCAGGTGGCCCGGGTCACGGGGGTGACGGCGGAGCAGAAGAGGATCATGGGAGTGGAGACGGGTCTGGAGCTCATCACTCTGCCGCACGGAGGCCAGCTCAGACAGGACCTGCTGGAGAGGCATCACGCGCTGGCTCTGGGCGTGGCGGTGGATCTTCTGGGCTGTACGGGGACGGTGGCTCAGAGGGCCACGCTGCTGCACAGGACCATTCAGCTGGCGCAGGAGCTGCGTAACACCACACACGACCTGTACGCCTTCTCCGCCGTCATGAAGGCGCTCGAGCTGCCGCAGGTGGCGAGGCTGGAGATGACATGGAGAGCGCTGAGGCATAATCACACGGACAGCGCCGTGGCGTTCGAGAAGAGCCTCAAACCCTTCATGAAGGCCCTGAACGAGGGCGACGacGGCGAGGCGTCGGGGCCGCTGTCTCTTCCTCACATGGTGCCGCTGCTGAGGCTGATGGAGGGAGAAGACGGCGTGGAGTCCACCGACAGAGGCTGCCAACTGCTCTACAACCTGCTGCAGTCGGCACGCAACGCCGCGCTACACGCTAACGACTGCTCGCGGCACGCTCACGGCCTGCTCTCCGCCGGATGGGAGCCAATCCCAGAGCTGCTGGAGGTGTTTCAGACGGAGTTCGCCCTTCGGCTCTTCTGGGGGCAGATGGGTGCCAAAGCCGATCGCAAGGAGCGCTACGCCAAATTCGACAGGATCCTCACGGTCCTCTCCAACAAACTGGAAGCGGACGGGAGCTCGGAGGTTTGAGCTCTGCTGGCGAGCACGGGAAGTCCAGCCACTTCTGAGCTTTATATTCCTGTCATTTACATGATAAAAACAGACCCGACGCCAGAGCACGAGCGCGAGGTGAAGCGTGTCGGATCTCTTACTAGAAAATTCCATATTTCAGCACGCGTTAGTTTACAGTCATGATGATGTTGTTTTGAAGCTGTGATTGTTTTCATATCTGAGTGAAATTTGCTAAATCTATATGCTTACTTTCAGAGGCACACTTTCTCTTACCAAAGCATTTCTGATTTTATATGTAaagaatatatttgaatttcttaatggattaaaatggaaattaataTATCAAA

Function

symbol description
sh2d3a Orthologous to human SH2D3A (SH2 domain containing 3A).

NR:

description
PREDICTED: breast cancer anti-estrogen resistance protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11196 True 3336 TUCP 0.49 8 29106314 29112734
XM_043219910.1 False 2927 mRNA 0.58 16 29101686 29111713

Neighbor

gene id symbol gene type direction distance location
LOC122324118 NA coding downstream 10912 29089146 ~ 29090774 (-)
LOC122322914 LOC107722580 coding downstream 13093 29085844 ~ 29088593 (-)
LOC122356586 LOC107721946,LOC107662706,LOC107560594 coding downstream 16228 29076419 ~ 29085458 (-)
LOC122362918 LOC107662727,LOC107722580 coding downstream 26990 29072735 ~ 29074696 (-)
LOC122358964 LOC107560570,LOC107742521,LOC107571120,LOC107746494,LOC107668675 coding downstream 36139 29062167 ~ 29065547 (-)
ubl5 ubl5 coding upstream 14186 29126920 ~ 29128828 (-)
LOC122363056 NA coding upstream 26708 29139442 ~ 29141023 (-)
wu:fk65c09 LOC107685033,LOC107723084,LOC107573413 coding upstream 52368 29165102 ~ 29169899 (-)
LOC122355388 LOC107723083,LOC107685037 coding upstream 57908 29170642 ~ 29182688 (-)
lpar2b LOC107662720,LOC107560608,LOC107758384,LOC107685038 coding upstream 72248 29184982 ~ 29195477 (-)
G7591 NA non-coding downstream 84530 29015665 ~ 29017156 (-)
G7579 NA non-coding downstream 120568 28971894 ~ 28981118 (-)
G7551 NA non-coding downstream 300021 28792644 ~ 28801665 (-)
G7550 si:dkey-222h21.2,si:ch211-114l13.4,si:ch211-236p5.3,LOC107729025,LOC107575333,LOC107574376,LOC107575359,LOC107659785,LOC107576777,LOC107575507 non-coding downstream 300830 28790466 ~ 28800856 (-)
G7547 NA non-coding downstream 327520 28773354 ~ 28774166 (-)
G7575 NA non-coding upstream 2762 29115496 ~ 29124052 (-)
G7574 NA non-coding upstream 44110 29156844 ~ 29158718 (-)
G7620 NA non-coding upstream 178027 29290761 ~ 29291343 (-)
G7624 NA non-coding upstream 179892 29292626 ~ 29293410 (-)
G7629 NA non-coding upstream 204847 29317581 ~ 29318226 (-)
LOC122324333 NA other downstream 157068 28942988 ~ 28944618 (-)
G7527 LOC107575698,LOC107577169,LOC107575696 other downstream 576135 28523705 ~ 28525551 (-)
G7515 slc27a1b,slc27a1,LOC107662711,LOC107560569,LOC107739969,LOC108413363 other downstream 655095 28406182 ~ 28446591 (-)
G7508 LOC107739967,LOC107747700,LOC107716241,LOC107572978 other downstream 709633 28391039 ~ 28392053 (-)
G7475 NA other downstream 853163 28244128 ~ 28248523 (-)
G7569 gtf3c1,LOC107678316 other upstream 189073 29301807 ~ 29310598 (-)
LOC122354733 LOC107678949,LOC107566822,LOC107713175,LOC107662686,LOC107758373,LOC107574162,LOC107662685 other upstream 298373 29411107 ~ 29434213 (-)
G7648 LOC107662685,LOC107678949 other upstream 313364 29426098 ~ 29476338 (-)
G7655 LOC107662685 other upstream 340025 29452759 ~ 29475388 (-)
G7816 NA other upstream 1079467 30192201 ~ 30197848 (-)

Expression


Co-expression Network