G7683 (LOC107739936,LOC107690077,LOC107566820)


Basic Information

Item Value
gene id G7683
gene name LOC107739936,LOC107690077,LOC107566820
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29496887 ~ 29500697 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU11459
GCTGTTTGTCTGAATAATGTTTGTGGCTTTAATAACAGTGATTctgcatttaatttgtacagtgaatatttcattcatacatTTCATAAGTGTATTCAATTTCTGTAGTATTTCTCTGTTAGATAGACTTTAAACACTccacatttcatttatatttgcatttttggtcCTTACTGATTATAACTGGGTACTCGTTTCcattaaacttatttttgttttattattattattattattaatctgcttttgctctctttctctcagagcATTTACAGTACCTGGTTCATATCTCGTTTTAATTTTCAACTTATTTACattgtattaaattgattaagcatgaattatttttaatcttcatCTGTCTTTTTATGTAACCTTCATACTGAATAATGGGGTCAGTCAATTCATTAATAGAAATGAGTAAACAGTCACAGTATAAATAAACGATTTAATTGACAGAGATTGTGTTTATTGTTAGACTAGTGTTTTATGGCACTATCACAAGACACGAACGGAAAACGAACAAAACGCCTTTATATTTATTCGAACTAATTACATATCCTCACTAAACGTCTCAAGACTACACTGACCGAAAAAAAGCAACATCTTAAGTTAATCAACGGagaatataaaacacaaaatgtacaaatataaataaaaccgaAGATAGAGAAGCGTTACGTATGTAATCCTAATGTGATTATAGTTCAGTGGCCTTCAGGGTGATCTGGTGTGTGGTCAGCCGTTGGTGACCGGCGGGTCGTCGTCGCAGTTCTCCGCCTCGGTCTTCACTCTGAGCAGCGCGCTGCTGCTGGACCGAGGCTCCTCGGCCGGGCTCTCGTGCACGCGCATGTGCTTGGCCAGGTGGTCTGCGCGGAGGAAGACCCTCGGGCACGAGCTGCAGCCGAAGCGCTTGGCTCCGGTGTGCGTCTGCAGGTGGCGCTGCAGCTCGTCGGAGCGCGTGAAGCGCTTGCCGCAGAACAGCCAGTTGCAGACGAAGGGCCGGTCGCCGCTGTGCCAGCGCAGGTGCGCCTTGAGGTGCGACGTCTTCACGTAGGCCTTCCCGCAGCCGGGGATGTGGCAGTTGTGCAGGTGCTTGCGCTTGTCGCTCCCCAGAGACTCGGCGCTCAGGCAGTTGGGGCAGCGGCAGGAGGCCTGTCCGGGAGCGCGACCGCCGGAGCGCCGCTGCGATCGAGGCCGAGCCGAGGCCCCCGCGCCGTCCTGCTGCTCCTCCGTGGAGAACGACGCCGAGGCCTGCGCCAGCGGCAGCGGATCCGGGGCCAGCGGCTCCATCTTGAAGCCCTCGGCCGGGTAGTGCAGGCCCGAGTGGGTGGAGCACATCTGCGGCTCAGGTGTGTAGGAGCTCATGGAGCCTCCCTGCACTGGCCCCGCCCCAGCCCCGCCCCCTGCAGGTCCATCCAGCCGGCGGCCGCTCCGTGGATGTCCCACCAGCCCGACACCTCCTCCTGCGGGGGCCCCGCTCGCAACCAGGGGTCATACGGGTGCGCCATAacaagagtgagtgtgtgtgagtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagagagagagacttgtgATGAAAACAGGTTTAACTGTCTGCCAGAActtctctgaaaacacacaaacacatgcagtcT

Function

NR:

description
PREDICTED: transcription factor Sp6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11459 True 1655 lncRNA 0.46 2 29496887 29500697

Neighbor

gene id symbol gene type direction distance location
LOC122349546 LOC107678949 coding downstream 20806 29472300 ~ 29476081 (-)
LOC122349539 LOC107662685 coding downstream 24600 29470344 ~ 29472287 (-)
mslnb LOC107566818,LOC107574164,LOC107707761 coding downstream 94509 29366477 ~ 29402378 (-)
LOC122359579 LOC107680745,LOC107740699,LOC107680747,LOC107662714,LOC107758392 coding downstream 156316 29335596 ~ 29340571 (-)
LOC122359260 LOC107680745,LOC107740699,LOC107680747,LOC107758392,LOC107662714,LOC107574731 coding downstream 170349 29320391 ~ 29326538 (-)
zmp:0000001082 LOC107572597,LOC107755319,LOC107678952 coding upstream 1808 29502505 ~ 29518876 (-)
wfikkn1 wfikkn1,LOC107678954,LOC107758378 coding upstream 19197 29519894 ~ 29523243 (-)
ears2 ears2 coding upstream 89266 29589963 ~ 29594827 (-)
LOC122324192 zgc:92827,LOC107758210,LOC107665919,LOC107758399,LOC107573835,LOC107668524,LOC107573875 coding upstream 285888 29786585 ~ 29792237 (-)
LOC122358417 LOC107721946,LOC107662706,LOC107560594 coding upstream 299281 29799978 ~ 29806220 (-)
G7654 LOC107662685 non-coding downstream 22036 29470716 ~ 29474851 (-)
LOC122326539 NA non-coding downstream 26647 29469675 ~ 29470240 (-)
LOC122326264 LOC107662685 non-coding downstream 29192 29466945 ~ 29467695 (-)
LOC122326350 NA non-coding downstream 30242 29465935 ~ 29466645 (-)
G7656 LOC107662685 non-coding downstream 32815 29463530 ~ 29464072 (-)
G7686 NA non-coding upstream 22202 29522899 ~ 29553586 (-)
G7675 cdc37 non-coding upstream 23498 29524195 ~ 29581127 (-)
G7694 NA non-coding upstream 47175 29547872 ~ 29549202 (-)
G7751 NA non-coding upstream 385583 29886280 ~ 29886672 (-)
G7755 NA non-coding upstream 413971 29914668 ~ 29915054 (-)
G7648 LOC107662685,LOC107678949 other downstream 20549 29426098 ~ 29476338 (-)
G7655 LOC107662685 other downstream 21499 29452759 ~ 29475388 (-)
LOC122354733 LOC107678949,LOC107566822,LOC107713175,LOC107662686,LOC107758373,LOC107574162,LOC107662685 other downstream 62674 29411107 ~ 29434213 (-)
G7569 gtf3c1,LOC107678316 other downstream 186289 29301807 ~ 29310598 (-)
LOC122362981 LOC107662727,LOC107560596,LOC107685031,LOC107722572 other downstream 344342 29067982 ~ 29152545 (-)
G7816 NA other upstream 691504 30192201 ~ 30197848 (-)
G7868 NA other upstream 1129537 30630234 ~ 30630505 (-)
G8009 NA other upstream 1442801 30943498 ~ 30957486 (-)
G8091 abca1a,LOC107703854,LOC107746118,LOC107571910,LOC107570823 other upstream 2031372 31532069 ~ 31537416 (-)
G8089 abca1a,LOC107571910,LOC107703854,LOC108413301 other upstream 2049489 31550186 ~ 31554035 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000900 sp6 coding NC_007112.7 CM002885.2 59533317 ~ 59539898 (+)
grasscarp (Ctenopharyngodon idella) CI01000365_00326334_00327173 NA coding CI01000365 null 326075 ~ 327600 (-)