G8089 (abca1a,LOC107571910,LOC107703854,LOC108413301)


Basic Information

Item Value
gene id G8089
gene name abca1a,LOC107571910,LOC107703854,LOC108413301
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 31550186 ~ 31554035 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU12077
GCACAAAGCACCACCGCTACAATATCTCTTTGAGAGAGTCAGAAcagctgtttttctctctcctcaaCAGGATTTACAGTTTATATGATATAAAGGAATAATAATTTCGGAGCGCGGAATAACGAGAGGAGGCACGGACGGTTCGGATCCGTGGCAAGATGGCTGTCTCCACTCAGTTGGGTTTGCTGTTGTGGAAGAACTTCACTTACGGCCGGAGACAGACTattCAGCTGCTGATCGAGATCGTATGGCCACTCTTCATCTTTTTCATCTTGATATCTGTCAGACTCCACTATCCTCCATACGAGCAACACGAATGCCACTTTCCCAACAAGGCCATGCCCTCTGCAGGGACTTTACCCTGGGTGCAGGGCATCATCTGCAATGCCAACAACCCCTGCTTTCGTTACCCCACCCCTGGAGAGACCCCCGGAGTGGTGGGCAACTTCAATGACTCCATCATCTCCCGACTGTTCACCGATGCCAAGAAAATTCTCCTCTACAGCCAACACGACAAGAGCTTCGAAGGCTTCAAAGGACTTGTTCGGGCGCTGAGGAAACTGCAGAGAAAC

Function

symbol description
abca1a Predicted to enable ATPase-coupled transmembrane transporter activity; phosphatidylcholine floppase activity; and phosphatidylserine floppase activity. Acts upstream of or within regulation of cholesterol efflux and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including blood vessel; central nervous system; neural tube; pleuroperitoneal region; and segmental plate. Human ortholog(s) of this gene implicated in Alzheimer's disease; coronary artery disease; hypolipoproteinemia (multiple); obesity; and type 2 diabetes mellitus. Orthologous to human ABCA1 (ATP binding cassette subfamily A member 1).

NR:

description
PREDICTED: ATP-binding cassette sub-family A member 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12077 True 572 TUCP 0.45 5 31550186 31554035

Neighbor

gene id symbol gene type direction distance location
LOC122349710 patl1,LOC107594300,LOC107657997,LOC107703847,LOC107598520 coding downstream 157100 31384340 ~ 31393086 (-)
LOC122349700 NA coding downstream 171647 31372496 ~ 31378539 (-)
cldng LOC107748278,LOC107691622,LOC107580989,LOC107552232,LOC107654796 coding downstream 576025 30972789 ~ 30974161 (-)
creb1a creb1a,creb1b,LOC107714305,LOC107757658,LOC107691602,LOC107552236 coding downstream 608460 30936398 ~ 30941726 (-)
trnar-ucu_5 NA coding downstream 687225 30862870 ~ 30862961 (-)
tacr3l tacr3l,LOC107570821,LOC107657987,LOC107757062,LOC107703855,LOC107746088,LOC108411976 coding upstream 7946 31561981 ~ 31572621 (-)
cldnd1b cldnd1b,LOC107746097,LOC107757065,LOC107570824,LOC107703857,LOC107657989 coding upstream 37102 31591137 ~ 31595295 (-)
glb1 glb1,LOC107746116 coding upstream 41796 31595831 ~ 31602441 (-)
LOC122327810 LOC107747443 coding upstream 80366 31634401 ~ 31661603 (-)
best2 best2,LOC107676102,LOC107569522,LOC107583204,LOC107694823,LOC100695332 coding upstream 174053 31728088 ~ 31734933 (-)
G8093 NA non-coding downstream 1432 31548195 ~ 31548754 (-)
G8074 NA non-coding downstream 54276 31492297 ~ 31495910 (-)
G8084 NA non-coding downstream 69842 31479187 ~ 31480344 (-)
G8086 NA non-coding downstream 79669 31468295 ~ 31470517 (-)
G8066 NA non-coding downstream 83153 31465621 ~ 31467033 (-)
G8100 acy3.2,LOC107657988,LOC107570825,LOC107703856,LOC107571911 non-coding upstream 25895 31579930 ~ 31580156 (-)
G8101 acy3.1,LOC107571911,LOC107746091,LOC107746117,LOC107703856,LOC107757064,LOC107570819,LOC107570825 non-coding upstream 26703 31580738 ~ 31589790 (-)
G8091 abca1a,LOC107703854,LOC107746118,LOC107571910,LOC107570823 other downstream 12770 31532069 ~ 31537416 (-)
G8009 NA other downstream 592700 30943498 ~ 30957486 (-)
G7868 NA other downstream 919681 30630234 ~ 30630505 (-)
G7816 NA other downstream 1352338 30192201 ~ 30197848 (-)
G7648 LOC107662685,LOC107678949 other downstream 2073848 29426098 ~ 29476338 (-)
LOC122349741 NA other upstream 68639 31622674 ~ 31626684 (-)
LOC122349752 NA other upstream 72868 31626903 ~ 31630020 (-)

Expression


Co-expression Network